mRNA_H-paniculata_contig350.9316.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig350.9316.1
Unique NamemRNA_H-paniculata_contig350.9316.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig350.9316.1 vs. uniprot
Match: A0A835YVQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVQ7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.220e-5
Identity = 39/118 (33.05%), Postives = 47/118 (39.83%), Query Frame = 1 
Query:  121 TALGIIVHLLKWCRANSCP*DDATCLMDTEYGHLEVLQ*CRANGCPWTV--DIVCLKRAGGGYIKARMKYMANH-----GPPFHAA------------TCAGAARGGHVEVLNWCRAN 417
            TA  + V  L W RA+ C       L+    G L +L+   AN CPW           AG  ++   +  M  H      P   AA             C GAAR GHVEVL WCR N
Sbjct:   58 TAADLSVDQLLWARAHGCCWGKHLTLLAASAGDLRLLRYLLANACPWDAYQAFGAAVSAGRAHVLPCIHGMMRHLNIELWPKSTAAEWRCAHHLDCERVCVGAARYGHVEVLEWCRRN 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig350.9316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YVQ7_9STRA6.220e-533.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig350contigH-paniculata_contig350:1487..2194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size709
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.3618264-UTR-H-paniculata_contig350:1486..18011622930080.3618264-UTR-H-paniculata_contig350:1486..1801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig350 1487..1801 +
1691481138.507153-UTR-H-paniculata_contig350:1486..18011691481138.507153-UTR-H-paniculata_contig350:1486..1801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig350 1487..1801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.3755877-CDS-H-paniculata_contig350:1801..21941622930080.3755877-CDS-H-paniculata_contig350:1801..2194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 1802..2194 +
1691481138.515479-CDS-H-paniculata_contig350:1801..21941691481138.515479-CDS-H-paniculata_contig350:1801..2194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 1802..2194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig350.9316.1prot_H-paniculata_contig350.9316.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig350 1802..2194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig350.9316.1

>prot_H-paniculata_contig350.9316.1 ID=prot_H-paniculata_contig350.9316.1|Name=mRNA_H-paniculata_contig350.9316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MKYMANHGPPFHAATCAGAARGGHVEVLNWCRANGGPWDEHTCARASWNG
HLEVLKWCRANGCPWDKMTCARAAENGDLEILKWCQANGCPWNTMEMKRA
MIHYHTEVEEWSKANGCPEPEDDNDLHGEAA
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mRNA from alignment at H-paniculata_contig350:1487..2194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig350.9316.1 ID=mRNA_H-paniculata_contig350.9316.1|Name=mRNA_H-paniculata_contig350.9316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at H-paniculata_contig350:1487..2194+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTAGCCTAGAAGCCCTGGAGTATGCTCGCACTCAAGGTTGTCAATGG
GATGAACAGTCGCGTGCTGGAGCTGCTGGGGGTGAGCATTTGGAAGTGTT
GAAGTGGTGCCGGGCTAACAACTGCGCTTGGAATAATCGTACATCTGCTG
AAGTGGTGCAGAGCCAACAGCTGTCCTTAGGATGATGCTACGTGTCTGAT
GGACACTGAGTATGGGCATCTGGAGGTGTTGCAGTAGTGCAGGGCTAACG
GCTGTCCTTGGACCGTTGATATAGTATGCTTAAAGAGGGCTGGTGGTGGA
TATATTAAAGCGCGGATGAAGTACATGGCCAACCACGGTCCTCCTTTTCA
TGCGGCCACATGTGCTGGAGCTGCACGGGGTGGCCATGTCGAGGTATTGA
ACTGGTGCAGGGCCAACGGCGGTCCTTGGGATGAGCACACATGTGCCAGA
GCTTCTTGGAATGGGCATCTCGAGGTGCTTAAGTGGTGCAGGGCTAACGG
CTGTCCTTGGGACAAGATGACATGTGCCAGAGCTGCCGAGAATGGGGATC
TCGAGATATTGAAATGGTGCCAGGCTAACGGCTGTCCCTGGAATACTATG
GAAATGAAACGTGCCATGATTCACTACCATACAGAAGTGGAGGAATGGTC
CAAAGCCAATGGCTGCCCTGAGCCGGAGGACGACAATGACCTGCACGGTG
AGGCAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig350:1487..2194+

>mRNA_H-paniculata_contig350.9316.1 ID=mRNA_H-paniculata_contig350.9316.1|Name=mRNA_H-paniculata_contig350.9316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig350:1487..2194+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTACATGGCCAACCACGGTCCTCCTTTTCATGCGGCCACATGTGC
TGGAGCTGCACGGGGTGGCCATGTCGAGGTATTGAACTGGTGCAGGGCCA
ACGGCGGTCCTTGGGATGAGCACACATGTGCCAGAGCTTCTTGGAATGGG
CATCTCGAGGTGCTTAAGTGGTGCAGGGCTAACGGCTGTCCTTGGGACAA
GATGACATGTGCCAGAGCTGCCGAGAATGGGGATCTCGAGATATTGAAAT
GGTGCCAGGCTAACGGCTGTCCCTGGAATACTATGGAAATGAAACGTGCC
ATGATTCACTACCATACAGAAGTGGAGGAATGGTCCAAAGCCAATGGCTG
CCCTGAGCCGGAGGACGACAATGACCTGCACGGTGAGGCAGCGATGAAGT
ACATGGCCAACCACGGTCCTCCTTTTCATGCGGCCACATGTGCTGGAGCT
GCACGGGGTGGCCATGTCGAGGTATTGAACTGGTGCAGGGCCAACGGCGG
TCCTTGGGATGAGCACACATGTGCCAGAGCTTCTTGGAATGGGCATCTCG
AGGTGCTTAAGTGGTGCAGGGCTAACGGCTGTCCTTGGGACAAGATGACA
TGTGCCAGAGCTGCCGAGAATGGGGATCTCGAGATATTGAAATGGTGCCA
GGCTAACGGCTGTCCCTGGAATACTATGGAAATGAAACGTGCCATGATTC
ACTACCATACAGAAGTGGAGGAATGGTCCAAAGCCAATGGCTGCCCTGAG
CCGGAGGACGACAATGACCTGCACGGTGAGGCAGCG
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