mRNA_H-paniculata_contig34988.9313.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE) HSP 1 Score: 187 bits (475), Expect = 5.550e-52 Identity = 121/322 (37.58%), Postives = 163/322 (50.62%), Query Frame = 1
Query: 13 CFQCNEPGHLKMNCPQRVCPICKGIGHGESSHGFTARLIEEDKPVPVD------------GCEEF----WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVRL--KEE-------GAAIALPNGSDDLCRKIGKHAFLSANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQ 903
C C GH K CP + + G +S TA + E+ V D G E+ +VAD+GAT HM +++ YE C V VA GET PI GYG + V + R L RVAHVP LD NL SL + + G + K E G + P + + + A A +APG +D+N F H +HGH HE LLR TAK+QG TLVG+L EC CS A+ L KPI T TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF +H+SD FE+
Sbjct: 165 CKTCKGYGHDKSKCPTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGECHKVVGRGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTERARAAIAPGNAKAPSTPVDINDF--HCAHGHSHEVLLRTTAKQQGTTLVGELRECLRCSAAKWLSKPIPNKTWTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHRSDAAEAFER 483
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE) HSP 1 Score: 188 bits (477), Expect = 4.210e-50 Identity = 107/251 (42.63%), Postives = 145/251 (57.77%), Query Frame = 1
Query: 178 ADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVR--------LKEEGAAIALPNGSDDLCRKIGKHAFLSANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQF 906
AD+GAT HM +++ YE C V VA GET PI GYG + V + R L RVAHVP LD NL SL + + G + L+ G ++ P S+ + + A A +APG +D+N F H +HGH HE LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF +HKSD FE++
Sbjct: 191 ADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKYDLELERGGESVRFPRYSNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDF--HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERY 438
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 186 bits (471), Expect = 2.890e-49 Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 1
Query: 172 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVRL--KEE-------GAAIALPNGSDDLCRKIGKHAFLSANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQF 906
+VAD+GAT HM +++ YE C V VA GET PI GYG + V + R L RVAHVP LD NL SL + + G + K E G + P + + + A A +APG +D+N F H +HGH HE LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF +HKSD FE++
Sbjct: 369 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDF--HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERY 619
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 186 bits (471), Expect = 2.910e-49 Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 1
Query: 172 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVRL--KEE-------GAAIALPNGSDDLCRKIGKHAFLSANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQF 906
+VAD+GAT HM +++ YE C V VA GET PI GYG + V + R L RVAHVP LD NL SL + + G + K E G + P + + + A A +APG +D+N F H +HGH HE LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF +HKSD FE++
Sbjct: 382 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDF--HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERY 632
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 186 bits (471), Expect = 2.930e-49 Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 1
Query: 172 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVRL--KEE-------GAAIALPNGSDDLCRKIGKHAFLSANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQF 906
+VAD+GAT HM +++ YE C V VA GET PI GYG + V + R L RVAHVP LD NL SL + + G + K E G + P + + + A A +APG +D+N F H +HGH HE LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF +HKSD FE++
Sbjct: 525 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDF--HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERY 775
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 153 bits (387), Expect = 4.560e-38 Identity = 111/324 (34.26%), Postives = 156/324 (48.15%), Query Frame = 1
Query: 13 CFQCNEPGHLKMNCPQRVCPICKGIGHGESSHGFTARLIEEDKP--------VPVDGCEEF------WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVRLKEEGAAIALPNGSDDLCRKIGKHAFL-----------SANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGD-LSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQF 906
C C GH K CP + + + +S A + E +P + + G EE +VADSGAT M S + +Y+ C N V GE L I GYG + V ++ G + R AHVPG+D NL SL + +G T K G + G + ++GK L + A++ PG+ D+N F H SHGH HE LLR TAK+QG+ L G L C GCS+A+G K + T+TRAV++L RVF+D+ G S GG Y+ +IR D +R ++F + KS+ EQF
Sbjct: 493 CEHCLGWGHKKEKCPTEAAVLAEVVSDVDSVEN-QAYMAEATQPGECGRTVDLGLVGVEEQGQGVMRYVADSGATCSMFRSADGFKNYQEC-NRRVKGIGGEFLRILGYGDVTVVLQSEGQEVPVPIKRAAHVPGMDLNLISLTSLTEEGHTYAGKPGGLVLTTKAGKEVWFPQLGKLLSLWGYQTEPEVDTACAAIIVPGEAKA-ATPTDLNEF--HNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQF 811
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5KSX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX8_9PHAE) HSP 1 Score: 134 bits (337), Expect = 8.240e-34 Identity = 82/201 (40.80%), Postives = 108/201 (53.73%), Query Frame = 1
Query: 232 YETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVRL---------KEEGAAIALPNGSDDLCRKIGKHAFLSANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGG 807
Y+ C V VA GET P+ GYG + V + R I L VA+V D NL L + + G + KE G ++ P + + + A A +APG +D+N F H +HGH HE LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG
Sbjct: 11 YQECDRR-VRVAAGETFPVVGYGDVTVTLSSRDGITDLILKWVAYVTRSDDNLVFLTSLFDDGFKTKTLDKHELELEKEVGESVYFPRCGNLYVQNGFRTHTEHACAAIAPGNAKAPSTPVDINDF--HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGG 208
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.150e-32 Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = 1
Query: 535 PGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQF 906
PG + +DVN F +++HGH HE LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF +HKSD FE++
Sbjct: 98 PGNAKASSTPVDVNDF--YRAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERY 219
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.010e-31 Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = 1
Query: 517 ANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQF 906
A A +APG +D+N F H +HGH HE LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF +HKSD FE++
Sbjct: 298 ACAAIAPGNAKAPSTPVDINDF--HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERY 425
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Match: A0A6H5JNW1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW1_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.370e-31 Identity = 90/287 (31.36%), Postives = 137/287 (47.74%), Query Frame = 1
Query: 13 CFQCNEPGHLKMNCPQRV---CPICKGIGHGESSHGFTARLIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWMKDRGDIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVRLKEEGAAIALPNGSDDLCRKIGKHAFLSANAVLAPGKMPINPNKIDVNLFLFHQSHGHLHEALLRETAKKQGLTLVGDLSECKGCSLARGLRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGIKYSFLIRDDFSRKIWIYF 864
CF+C + H +C + C CKG GH +S ++ + P GA+A T + D + L V +GE + G RG + + R+ + + + + L + KEEG ++ P + + + A A +APG + +D+N F H + GH E LLR TAK+QG TLVG+L EC GCS A+GL KPI T+TRAV++L RVF+D+SG V+S GG Y+ +++DD++R +YF
Sbjct: 215 CFRCGKKAHQVADCTESKPVRCETCKGYGHDKSKCPTEEAVLVVEVPA------------GGASADATALDATALDVAEDA-LVVGDLSGECHKVVG----------RGGVEQARRGRLVSLTSPFDDGLKTKTLDKHDLKLE-KEEGKSVLFPRCGNLYVQNGFRTHTEHACAAIAPGNAKASSTPVDINDF--HCAQGHSREVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYF 475 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34988.9313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34988.9313.1 >prot_H-paniculata_contig34988.9313.1 ID=prot_H-paniculata_contig34988.9313.1|Name=mRNA_H-paniculata_contig34988.9313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp ETRVCFQCNEPGHLKMNCPQRVCPICKGIGHGESSHGFTARLIEEDKPVPback to top mRNA from alignment at H-paniculata_contig34988:128..1132+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34988.9313.1 ID=mRNA_H-paniculata_contig34988.9313.1|Name=mRNA_H-paniculata_contig34988.9313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-paniculata_contig34988:128..1132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34988:128..1132+ >mRNA_H-paniculata_contig34988.9313.1 ID=mRNA_H-paniculata_contig34988.9313.1|Name=mRNA_H-paniculata_contig34988.9313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig34988:128..1132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |