mRNA_H-paniculata_contig3498.9312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3498.9312.1
Unique NamemRNA_H-paniculata_contig3498.9312.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: D7G7R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R8_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.160e-97
Identity = 156/215 (72.56%), Postives = 185/215 (86.05%), Query Frame = 1 
Query:    1 LIQVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLR-SRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQYT 642
            L  +RDPTT AVLLEDG AC+GV++AM+G GL+Q Y  PVFDSLAGVSIAGLLGVMGL L ++NRR+LIGQ+VD + TEGIK ILM RGSIEQLHQVQSQWVG +TF+FKAEVDFDGT+LAAKL+ + +  ++F ++L RPP D  + KD E LLSFYTEDVMRAAEREVR AETEIRKKYPEAAY++LEPDSSTH ++ALEQ+QTPAL+KV+ T
Sbjct:  228 LTNLRDPTTLAVLLEDGAACVGVLMAMSGIGLSQYYQAPVFDSLAGVSIAGLLGVMGLVLTEVNRRFLIGQSVDSETTEGIKAILMSRGSIEQLHQVQSQWVGTHTFAFKAEVDFDGTFLAAKLKLNTRYGQEFRQLLARPPDDKGKYKDHETLLSFYTEDVMRAAEREVREAETEIRKKYPEAAYIELEPDSSTHNMFALEQFQTPALRKVEET 442
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BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A6H5J9P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P9_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 7.560e-75
Identity = 137/218 (62.84%), Postives = 163/218 (74.77%), Query Frame = 1 
Query:    1 LIQVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQ---SQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQ-FDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQYT 642
            L  +RDPTT AVLLEDG AC+GV++AM+G GL+Q Y  PVFDSLAGVSIAGLLGVMGL L ++NRR+LIGQ+VD + TEGIK ILM RGSIEQLHQ +   S W      S         + L +    +  + Q F ++L RPP D  + KD E LLSFYTEDVMRAAEREVR AETEIRKKYPEAAY++LEPDSSTH ++ALEQ+QTPAL+KV+ T
Sbjct:  291 LTNLRDPTTLAVLLEDGAACVGVLMAMSGIGLSQYYQAPVFDSLAGVSIAGLLGVMGLVLTEVNRRFLIGQSVDSETTEGIKAILMSRGSIEQLHQARCNHSGWGRTLLPSRPRSTSMAPSLLLSSSSIQGTYGQEFRQLLARPPDDKGKYKDHETLLSFYTEDVMRAAEREVREAETEIRKKYPEAAYIELEPDSSTHNMFALEQFQTPALRKVEET 508
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BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A7S1FQ98_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ98_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.660e-63
Identity = 114/210 (54.29%), Postives = 147/210 (70.00%), Query Frame = 1 
Query:    7 QVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
            ++RDP T A+L ED  A  GV++A AG   T   G+PV+D  AGV+I+GLL  +GL+L+ +N+R+L+GQAVD DITEGI+ IL+ R SIE +  VQSQW GPY FS+KAEVDFDGTYLAA+L SR   K+F K       D    KDL +LLS+Y EDVMR  EREVR  E EIR  YP AAY++LEPDS     +A++  +  AL+K++
Sbjct:  250 RIRDPATLAILYEDAAAVAGVVLASAGIVATYATGSPVYDGTAGVAISGLLAFVGLQLVLLNQRFLLGQAVDADITEGIESILLQRRSIEGVSSVQSQWTGPYAFSYKAEVDFDGTYLAARLMSR-YKKEFRKATEGSSLD----KDLSVLLSWYAEDVMRLVEREVRDIEAEIRSVYPGAAYIELEPDSKYSDQFAIDDVKQEALQKIE 454
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BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: B8C824_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C824_THAPS)

HSP 1 Score: 216 bits (549), Expect = 4.080e-63
Identity = 114/210 (54.29%), Postives = 146/210 (69.52%), Query Frame = 1 
Query:    7 QVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
            +VRDP T AVLLEDG ACLGV++A+ G G+TQ  G PVFD LAG+ I+ LLGVMG+ L+ +N R+LIGQ +D    E I+KI++ R SI+ ++ VQSQW GP TFS+KAEVDFDGT+LAAKL  R   + FD            ++DL +LLS+Y EDVMRAAEREVR  E EIR KYP A Y++LEP S     YA++      L++V+
Sbjct:  397 KVRDPATLAVLLEDGAACLGVVLAIGGIGMTQYTGMPVFDGLAGMGISALLGVMGMALVSVNHRFLIGQGLDKATREDIEKIILSRRSIDNVYSVQSQWTGPDTFSYKAEVDFDGTFLAAKLMPRYQQEFFD-------AKHTLDRDLRVLLSWYAEDVMRAAEREVRHIEEEIRLKYPSAQYIELEPMSKDADRYAIDDGMEAQLRRVE 599
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BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A7S0FKN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKN8_9STRA)

HSP 1 Score: 203 bits (516), Expect = 8.870e-63
Identity = 106/198 (53.54%), Postives = 143/198 (72.22%), Query Frame = 1 
Query:   43 EDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
            EDG ACLG+++A+AG G TQ    PVFDSLAGVSI+ LLG MGL L+++N R+L+G AVD +ITE IKKIL+++ SI+ +H +QSQW GP TFS+KAEVDFDGT+LAAKL  R    +F K  +        +KDL +LLS+Y EDVMR+AERE++  E +IRK+YP A Y++LEP S     +A++      LK+++
Sbjct:    1 EDGAACLGIVLAIAGIGATQATSLPVFDSLAGVSISALLGAMGLILVRVNHRFLLGHAVDSEITEAIKKILLNQKSIDGVHSIQSQWTGPETFSYKAEVDFDGTFLAAKLMPR-YQTEFLKAQK------SLDKDLRVLLSWYAEDVMRSAEREIKYIEAQIRKEYPGAEYIELEPMSKDSDRFAIDDGMEAQLKRIE 191
[Close]
BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A7S2M4U9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M4U9_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.690e-62
Identity = 108/210 (51.43%), Postives = 146/210 (69.52%), Query Frame = 1 
Query:    7 QVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
            +VRDP T AVLLEDG ACLG+++A+ G G+TQ  G P+FD +AG+SI+ LLGVMG+ L+ +N RYLIG  VD    E I++I++ R SI+ +H +Q+QW GP TFS+KAE+DFDGT+LAAKL  R   + FD            ++DL +LL++Y EDVMRA ERE+R  E EIRKKYP A Y++LEP S     YA++      L++V+
Sbjct:  434 KVRDPATLAVLLEDGAACLGIVLAIGGIGMTQYTGLPIFDGMAGISISALLGVMGIALVSVNHRYLIGHGVDRATREDIEQIILGRRSIDNVHAIQTQWTGPDTFSYKAEIDFDGTFLAAKLMPRYQQEFFD-------AKESLDRDLRVLLAWYAEDVMRAVEREIRHIEEEIRKKYPAAQYIELEPMSKDADRYAIDDGMKAQLRRVE 636
[Close]
BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A7S3V4S7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4S7_9STRA)

HSP 1 Score: 215 bits (547), Expect = 2.300e-62
Identity = 112/210 (53.33%), Postives = 147/210 (70.00%), Query Frame = 1 
Query:    7 QVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
             +RDP T A+LLED GACLGV+IA+ G G TQ Y  PVFD+LAGV I+GLL  MGL L+++N ++L+GQ+VD +I +G++KILM+R SI+ +H VQSQW GP TFSFKAEVDFDGT+LAAKL  R         L         ++DL +LLS+Y EDVMR  EREVR  E EIR++YP A Y++LEP S      A++     +LK+++
Sbjct:  443 NLRDPATLAILLEDAGACLGVLIAIGGIGATQYYQMPVFDALAGVGISGLLASMGLILVKVNHKFLLGQSVDKEIRQGVEKILMERRSIDNVHSVQSQWTGPDTFSFKAEVDFDGTFLAAKLMPRYQ-------LEFAQASATLDQDLRVLLSWYAEDVMRTVEREVRNIENEIRREYPGAQYIELEPMSKDADRLAIDDGLEASLKRIE 645
[Close]
BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A7S1DBT2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBT2_CYCTE)

HSP 1 Score: 205 bits (521), Expect = 3.760e-62
Identity = 107/210 (50.95%), Postives = 143/210 (68.10%), Query Frame = 1 
Query:    7 QVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
             +RDP T A++LEDG ACLGVMIA AG   +   G PV+D LAG  I+ +L  MG+ L+++N R+L+GQAVD DITEGI+KIL+ R SI+ +  VQSQW GP TFSFKAEVDFDGT+LAAKL  R  ++  +            + +L +LLS+Y EDVMR  EREV+  E EIRK+YP A Y++LEP S     +A++   T  L++++
Sbjct:   77 SLRDPATLAIILEDGAACLGVMIACAGIFASHATGMPVYDGLAGCGISAVLAAMGIVLVRVNHRFLLGQAVDKDITEGIEKILLLRRSIDNVQSVQSQWTGPETFSFKAEVDFDGTFLAAKLMPRYQNEFLE-------VGDSLDSELRVLLSWYAEDVMRTVEREVKEIEAEIRKRYPGAEYIELEPMSKDSDRFAIDDGMTGQLRRIE 279
[Close]
BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A7S4JAV4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV4_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.290e-60
Identity = 112/210 (53.33%), Postives = 144/210 (68.57%), Query Frame = 1 
Query:    7 QVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
             +RDP T A+LLEDG ACLGV+IA+AG G T   G PVFD LAGV+I+GLL  MGL L+++N R+L+GQAVDP IT GI+ IL  R SIE ++ VQSQW GP TFS+KAEVDFDGT+LAAK+  R   +  +    R   D     DL +LLS+Y EDVMR  EREVR  E +IR+ YP A +++LEP S     +A++      LK+++
Sbjct:  509 NMRDPATLAILLEDGAACLGVVIAIAGIGATSYSGMPVFDGLAGVTISGLLAAMGLALVRVNHRFLLGQAVDPVITRGIEDILTGRSSIENVYSVQSQWTGPDTFSYKAEVDFDGTFLAAKIMPRYQREFLEA---RDTLD----SDLRVLLSWYAEDVMRTVEREVRDIEADIREAYPGAEFIELEPMSKDSNRFAIDDGMEAQLKRIE 711
[Close]
BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Match: A0A7S2SWT6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SWT6_9STRA)

HSP 1 Score: 204 bits (518), Expect = 4.290e-60
Identity = 109/212 (51.42%), Postives = 151/212 (71.23%), Query Frame = 1 
Query:    1 LIQVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIAGLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQWVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDLEILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYALEQYQTPALKKVQ 636
            ++ +RDPTT AVLLED  AC GV+IA AG GL+QL G   +D L    I+GLLG MG+ L+++N R LIG+AVDP IT  IK +L+ R SI+ +H V  QW GPYTFS+KAE+DFDGTY+AA+L SR +  +F         D+  +KDL+ILL++Y EDV+R  EREV   E +IR++YPEAA+++L PDS+  + +A+E  +  AL++V+
Sbjct:  226 VMSLRDPTTVAVLLEDSAACAGVLIAGAGIGLSQLTGHTHYDVLGEFMISGLLGAMGIALVRLNVRSLIGRAVDPQITGAIKALLLSRPSIDAVHSVTHQWEGPYTFSYKAELDFDGTYIAARLHSRYLT-EFQNA-----QDL--DKDLKILLAWYAEDVVRVVEREVNLLEAKIREEYPEAAFIELVPDSTDTSAFAIEGNKQQALRRVE 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3498.9312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7R8_ECTSI2.160e-9772.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9P9_9PHAE7.560e-7562.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1FQ98_9STRA1.660e-6354.29Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8C824_THAPS4.080e-6354.29Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0FKN8_9STRA8.870e-6353.54Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2M4U9_9STRA1.690e-6251.43Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3V4S7_9STRA2.300e-6253.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1DBT2_CYCTE3.760e-6250.95Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4JAV4_9STRA3.290e-6053.33Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2SWT6_9STRA4.290e-6051.42Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3498contigH-paniculata_contig3498:282..5356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.5
Seed ortholog evalue8e-80
Seed eggNOG ortholog2880.D7G7R8
KEGG koko:K14696
KEGG TC2.A.4.6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG2802@2759
Ec32 ortholog descriptionCation efflux protein
Ec32 orthologEc-06_000610.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons6
Model size666
Cds size666
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3498.9312.1prot_H-paniculata_contig3498.9312.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3498 282..5356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.2952523-CDS-H-paniculata_contig3498:281..3731622930079.2952523-CDS-H-paniculata_contig3498:281..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 282..373 +
1691481138.0895205-CDS-H-paniculata_contig3498:281..3731691481138.0895205-CDS-H-paniculata_contig3498:281..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 282..373 +
1622930079.3082297-CDS-H-paniculata_contig3498:792..8861622930079.3082297-CDS-H-paniculata_contig3498:792..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 793..886 +
1691481138.1008415-CDS-H-paniculata_contig3498:792..8861691481138.1008415-CDS-H-paniculata_contig3498:792..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 793..886 +
1622930079.3238406-CDS-H-paniculata_contig3498:1580..16821622930079.3238406-CDS-H-paniculata_contig3498:1580..1682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 1581..1682 +
1691481138.1105683-CDS-H-paniculata_contig3498:1580..16821691481138.1105683-CDS-H-paniculata_contig3498:1580..1682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 1581..1682 +
1622930079.3368-CDS-H-paniculata_contig3498:2476..25841622930079.3368-CDS-H-paniculata_contig3498:2476..2584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 2477..2584 +
1691481138.1218514-CDS-H-paniculata_contig3498:2476..25841691481138.1218514-CDS-H-paniculata_contig3498:2476..2584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 2477..2584 +
1622930079.3488743-CDS-H-paniculata_contig3498:3547..36551622930079.3488743-CDS-H-paniculata_contig3498:3547..3655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 3548..3655 +
1691481138.129433-CDS-H-paniculata_contig3498:3547..36551691481138.129433-CDS-H-paniculata_contig3498:3547..3655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 3548..3655 +
1622930079.3591874-CDS-H-paniculata_contig3498:5194..53561622930079.3591874-CDS-H-paniculata_contig3498:5194..5356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 5195..5356 +
1691481138.138276-CDS-H-paniculata_contig3498:5194..53561691481138.138276-CDS-H-paniculata_contig3498:5194..5356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3498 5195..5356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3498.9312.1

>prot_H-paniculata_contig3498.9312.1 ID=prot_H-paniculata_contig3498.9312.1|Name=mRNA_H-paniculata_contig3498.9312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
LIQVRDPTTAAVLLEDGGACLGVMIAMAGCGLTQLYGTPVFDSLAGVSIA
GLLGVMGLRLIQMNRRYLIGQAVDPDITEGIKKILMDRGSIEQLHQVQSQ
WVGPYTFSFKAEVDFDGTYLAAKLRSRQVHKQFDKVLRRPPTDVKREKDL
EILLSFYTEDVMRAAEREVRAAETEIRKKYPEAAYVDLEPDSSTHALYAL
EQYQTPALKKVQYTGYYYTPD*
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mRNA from alignment at H-paniculata_contig3498:282..5356+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3498.9312.1 ID=mRNA_H-paniculata_contig3498.9312.1|Name=mRNA_H-paniculata_contig3498.9312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5075bp|location=Sequence derived from alignment at H-paniculata_contig3498:282..5356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAATTCAGGTTCGAGATCCGACAACGGCTGCCGTACTCTTAGAGGACGG
CGGCGCATGCTTGGGCGTCATGATTGCGATGGCGGGGTGTGGGTGAGGCA
CGTACGCTATTTGGATTTGTATTGAGTTCTTCTGACTGTAGGACTGCTGC
GAACGTCTTTTTCCAGTTTTGTTTAGCTCTGAGAGCGTCATTGTCCACAC
AATCTCCCGGAATGTAATCCCCACCTGAAAAAGAAAGAAGACGGAAAATA
ACAAAATAGCAAAAAAGAAAGCCTAGGATATAAGATAGGCTGTTTAGAGA
CAGGACTCGTCAATGTGTATCCGCGAGTGGGAGCTAATTCCCTTCATTTG
TACTTAATTTCACGCAATTTCATTTGCAAATGGTCGAGGAATTCACGAAT
TGGATGCGTACAAGAGCGAAGTACACTTGGAGGTATATGTCATTATTTAC
CCCCGTTGGTGGTTATGTTATGGATTATTTTACCGCGACGACAATGCTCT
CTTTGTTCAAGGTTGACTCAGCTCTATGGAACCCCAGTTTTCGACAGCTT
GGCAGGCGTCAGCATCGCTGGGCTCCTCGGAGTGATGGGGCTGCGTCTTA
TTCAGGTGAAAATTTAAATAATTAGGTATTTGACTTTGACGATATGTCGA
AAATTGGAGGGAAAATTGGCGCCTCTAGTTTATGGTTTAAGTGTAAGATG
TTTTCCCAAAATCACCTCGGTGGTGTGAAAGTGATTTTTTTTTTTTTTTC
CCAATTGAGGTCGTGTTTTTCGCGAACTACGGTGCTCTGTGTATATGAGA
ATGCCGATATTGTGAGAAAATTTTGCGTCGTTTGGAATAGGTGCTCGTCT
AGAAGCGTGTCCCGTATATGCTGAAACGGTTGCTGCCCCGATATGTACAT
GTGTTTCGAATTCTCTGAGTATCCCTGTTTACAGGTGACGCGTACATTCA
CAACCACACAAGGTAACTTAACTTGTCACAGGAATGCTTCATTCATGTTT
TTTTCCCTTCATATTTACATCTATTTATTTGGAAGGACCTTGAAGGGACA
GCCTAATACCGCTGCGCGGTACATAGATCTATATAGAAGATTGTTGTCAC
GGGCCACGGTCATTTCGGAACAATTTTCAAGTTTGCACTTGAGTAACTTC
TTAACACGATATCTTCACGGACGTCGCTTCTTGATAGAAATGTAAACCTC
GCGGACTTAGCCGTGGTCTTACCATCAGCACTGAAAATGGAACGAGTGTC
ATCTTATCCAGATATGTATGTACGCCGTGGTGCCGCGTTATATGCACAGA
TGAACAGGCGATATCTGATCGGACAGGCTGTGGATCCAGACATCACAGAG
GGGATCAAAAAGATACTTATGGACCGTGGTTCGATAGAACAACTGCATCA
GGTGAAAAAGTTAATCATGATCGAAAAAAAGAAGAAGAGTTTGGGGGCGA
GGTATGTATGTATATATATATATATTCGGCACGTAGTAGTAATATCCGCT
TCATCGTAATTTTAATTTCTTTCATCCCTGGATTTTTTTTCTTGTTCGAA
GTTTGGGTTATCGAGAAATGAAGTTGTGGTGCTCCTCGTGACAAGCAGAA
AAGCTGTCGCTGGAAATATGTTATCGGGATATGTTGGTGACATGGACGGT
ATTCTGACAGTACAAGATCTTGCTTCTCGAAATAATGCCTGTTTAAATAA
ATCATTACCTGGGGACGATATTCTACGTGATGTGATGCACCCTGGGGTAA
TTCAGTTACGGTAGGTGAAGACTCGTAAGGCAACTTGAACAAGGGGTCAG
GTCTGATTATGCATATTTTTATGTTCGCTTCCAACAGGCTAAGTAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGACTCACGTCGTAGCAGTA
GATAGTGAAATTGATTAGACTACAAACATTAACATTGGACAAAGATCTCG
CAAGATGCGGTACATCATGCCTTACGTCATTCCCGTTGCTCCACACTATT
AGCATGTAAAAATGGTAGAATTAGAAGACTCTTCAAAATCCTTCAAGAGC
AGACGTAACGCTCGTTGTAAATTATGACGATAGAAAAGTAAACTCAAGAG
CAACCGTACCGAATCCTTGTGGATGATGACATTCACGCACGAAAGATGAC
AACGTACATTTATCCTTACTGATGAATACGAATAATACGACACAGGTGCA
GTCACAGTGGGTGGGGCCGTACACTTTCTCGTTCAAGGCTGAAGTAGACT
TCGACGGTACCTATCTGGCGGCGAAGCTCAGATCCAGGCAAGTGCACAAA
CAGGTATCTTAATGAAGAATGAACAATGACTATTTACGATATACATGATG
ACTGTTTCGGGAATATTTTCTATACTTTTACGTTCGTCATGGTTGAATAG
TTGTCTGTCAGTGAAAGCCAATGATAGTTATCCATGGTGTTGTACAGTGT
ACCAGATCATTTTCGGCATTGTTTTATCGCTGTTCAATGATTAGCGGAAT
ATGTTACTTCTTGCTATTAGTCCAAGAAAGTTTTTTTTTTTTTTTCCTTC
GCTTAAGCCTATAAAAAATGCCTCTTTGTAGTTTTGCACGTTTTGTTCAT
TTTCGGCGAAATTTTCGTAGTCCCAACTGGAGTGTTCCCCATTTTGCTTT
CATCAGTGAAACTTTGGTGCCGGTTGTCTCGAGTGCTTTCATGTATTTCA
ATCAGTTTCATCGGGGGGAACCTTTGGTATTAATGAGGGTGTACCGTTTG
TGCGCCTTCTGTGCCACGTTAGTTTCTTGTCGTATTTGTTGCCGGGCTGT
TTCGTCAACTATTTATCGCAAAAGAGCAAAATAGCAAAAGAAAATGATCT
AGCCGCCCTGTTCGACAGCCACCAGGAGGCAGCACTAGCAAAATAAATAT
TAACCCAATAGGAGCCCGGATTCCTCCCGAATTAACCTGCCAATCTCTTA
CGGCTGTTGAGAATTATTGTGGCGACGTTCCCTGATTTTACAGCATATTT
TGGAAAGTATCGGCCATGATCCACGACAGGTCCTCGAGAGGTCTGTTGGG
TTACGAAATACAGCGTTAACGAGTACTATCGTGTCCTAGGGAGGAATCTT
GTGTCCACTACATGTTGCAGTCATTTAGTGTGTGTGTTGTACGGCTCTCA
GGTAGGTTGCTTTTGTAGCGTTTGTGCGAAAGAGGAAGCGTGATACCAAA
TGATTAATTGATGTCTGTCGTGGCGGGCGTGTGCTGTTGGACTGGGTCGA
CAGATACGGAAAAGAGTTTGATAAGGTGCTGAGGCGACCGCCGACCGATG
TGAAGAGAGAAAAAGACCTTGAAATTCTACTTTCGTTTTACACCGAGGAC
GTGATGCGGGCAGCGGAGAGAGAGGTGGGTTGGGGCAAACTTGACCCACT
CTGAGCGCTGTTTTTTTTTGTTTTTTTTGTATCCGCGGTCTTGTCCTGTT
GGTTGATGACCCTTTTGGATAAGATCTTGTGACTGGCTAATTATCATTGC
AGATAGTGCTTGTTTTTGTTTGTTATTTGGTCATTTCGAAACGAGCCCGG
TGTTCACCCGTTCTCGCTGTATGCTGAATCGAAGATATCAATACCCCAAT
TGGCGATTAATTACCTCCTTTTGCAATAAATAACCCCTTGTGGATCTGAG
ATACACTTCCCAGCTGTCGAGAGCTGGTTTGGCATTATGAACTCGTATTG
GTCATTATTTAGGACTGGTCGTTACGATCTTCGGTTCCTAGAAAAAGGTC
GTTGGGAATGCTCACTCATCCTAAAGGCGGGTACCCCCGAAATATTGGGT
GGATAGGGATTGAAATATGCTTTGCAACATAATGGGGGTAGGGATGGAAC
GGGAGAAAATATGAAATCCCCCGAACATCCCAGATGGTGATATTATTACG
ATGGTATCATACCGCCGTTCTGTAGCCACTGAATATGATGGAGGAGTGTG
CAAACCGGTAGATTGTCTACAATATCTCGAGCGTCACAGTCTATGTAAAC
GGGGATCTTCTGCAAGTAAATCTCGGTTCGGTGCCACAAGCGCTGTAGTT
CTCGAGGAAAGATTTTTGAAAATATTGATGGCCCGGGGTATTGCACAATT
TAAGCTGAGTTGCGGTACAATTAGCGTTTCACCTTGAGGTTCGCAACGTC
AAGGTGGGACCCCACTCTGAGGGGCACAATTTTTTCGGACCCAAATTACG
CCCTGTATACATGGAGTGTACGTGGATGGGCGTACGTACCTCTCGATTGC
GACGCCTATGCCCCTCCACTCCCCTGTTTAAGGCCTGAACGCGTGTCTCT
GCGTTTTGCCAGTAGAGCAAGTAGCTCTGTGGGCATTTACCCCGAAGCCA
AGAGAATTGATCGCGTAGCACTGTATCAGCCCGTTTTGGAGTTTCGGAAC
CGGCGTAGATGATTGTCAATTATTGATAATATCGTGGGGTGTTGTTTCTT
TCCGACGAAATCTTCGTACTGTGTACAAATATGAATGATGACTAATACGT
GGAGCATTCGCCACGAAAACCGGCAAGTATTTGCCTAAAGATTCAAGATG
TTCGGGCATGTATAATAAGTCTTGACCCCTTCTTCATTGTTCGTTTTACA
ATCATTTGGAGCCGTCGTGAATCGCCCGGTTCGCGTAAAACGTTCATGTT
CGACCTTCAGGAAAATACTTGAAATCTCTTCGTTGCGAACAGTCGAAGTC
TTGGTGTTCGTCCGTAGGGTTAAACGTTTTACAGCGACGCTTGTTGAATC
TCAGAACAGTTTAACGTATTACAATCCCCCCCGTTATTTCGCTGGCATAG
CGAAACCATCGGAAGAAATTGGTTGATTTTTGCTCTAGAGTATCGGATGA
AAGATGGAGATTTTTTTTGCTACACATGTTGCCAATTGGTTTGGTCGTGT
ATGTAACCAACAGGTTCGAGCGGCAGAGACGGAGATTCGAAAGAAGTATC
CGGAGGCAGCCTACGTCGATCTCGAGCCAGACAGCAGCACCCACGCCCTG
TACGCCCTGGAGCAGTACCAGACACCCGCTCTTAAAAAGGTACAGTACAC
AGGATACTACTATACCCCTGACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3498:282..5356+

>mRNA_H-paniculata_contig3498.9312.1 ID=mRNA_H-paniculata_contig3498.9312.1|Name=mRNA_H-paniculata_contig3498.9312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig3498:282..5356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAATTCAGGTTCGAGATCCGACAACGGCTGCCGTACTCTTAGAGGACGG
CGGCGCATGCTTGGGCGTCATGATTGCGATGGCGGGGTGTGGCTAATTCA
GGTTCGAGATCCGACAACGGCTGCCGTACTCTTAGAGGACGGCGGCGCAT
GCTTGGGCGTCATGATTGCGATGGCGGGGTGTGGGTTGACTCAGCTCTAT
GGAACCCCAGTTTTCGACAGCTTGGCAGGCGTCAGCATCGCTGGGCTCCT
CGGAGTGATGGGGCTGCGTCTTATTCAGGTTGACTCAGCTCTATGGAACC
CCAGTTTTCGACAGCTTGGCAGGCGTCAGCATCGCTGGGCTCCTCGGAGT
GATGGGGCTGCGTCTTATTCAGATGAACAGGCGATATCTGATCGGACAGG
CTGTGGATCCAGACATCACAGAGGGGATCAAAAAGATACTTATGGACCGT
GGTTCGATAGAACAACTGCATCAGATGAACAGGCGATATCTGATCGGACA
GGCTGTGGATCCAGACATCACAGAGGGGATCAAAAAGATACTTATGGACC
GTGGTTCGATAGAACAACTGCATCAGGTGCAGTCACAGTGGGTGGGGCCG
TACACTTTCTCGTTCAAGGCTGAAGTAGACTTCGACGGTACCTATCTGGC
GGCGAAGCTCAGATCCAGGCAAGTGCACAAACAGGTGCAGTCACAGTGGG
TGGGGCCGTACACTTTCTCGTTCAAGGCTGAAGTAGACTTCGACGGTACC
TATCTGGCGGCGAAGCTCAGATCCAGGCAAGTGCACAAACAGTTTGATAA
GGTGCTGAGGCGACCGCCGACCGATGTGAAGAGAGAAAAAGACCTTGAAA
TTCTACTTTCGTTTTACACCGAGGACGTGATGCGGGCAGCGGAGAGAGAG
TTTGATAAGGTGCTGAGGCGACCGCCGACCGATGTGAAGAGAGAAAAAGA
CCTTGAAATTCTACTTTCGTTTTACACCGAGGACGTGATGCGGGCAGCGG
AGAGAGAGGTTCGAGCGGCAGAGACGGAGATTCGAAAGAAGTATCCGGAG
GCAGCCTACGTCGATCTCGAGCCAGACAGCAGCACCCACGCCCTGTACGC
CCTGGAGCAGTACCAGACACCCGCTCTTAAAAAGGTACAGTACACAGGAT
ACTACTATACCCCTGACTGAGTTCGAGCGGCAGAGACGGAGATTCGAAAG
AAGTATCCGGAGGCAGCCTACGTCGATCTCGAGCCAGACAGCAGCACCCA
CGCCCTGTACGCCCTGGAGCAGTACCAGACACCCGCTCTTAAAAAGGTAC
AGTACACAGGATACTACTATACCCCTGACTGA
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