mRNA_H-paniculata_contig34979.9311.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34979.9311.1
Unique NamemRNA_H-paniculata_contig34979.9311.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34979.9311.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.160e-22
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:    1 PAVQWALNTSWRLSIHTTPFTLMHGRERRIRFAAMAVEQDGECTIEPLDAGEVQQMAQRIVEAQQVRRRDVLRCKDARRAKSRARASGEELPHFTAGDFVLVARVRKSGAHAKLVSRWTGP 363
            PAVQWALNT++R    +TP+ +M GR  R  F+ +A        I+ LDA +++Q  Q +++ Q V  + + +  D  RA+ RA AS  +LP FT GD+V+VARVR+SG   KL S WTGP
Sbjct:  177 PAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGP 297
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BLAST of mRNA_H-paniculata_contig34979.9311.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.870e-22
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:    1 PAVQWALNTSWRLSIHTTPFTLMHGRERRIRFAAMAVEQDGECTIEPLDAGEVQQMAQRIVEAQQVRRRDVLRCKDARRAKSRARASGEELPHFTAGDFVLVARVRKSGAHAKLVSRWTGP 363
            PAVQWALNT++R    +TP+ +M GR  R  F+ +A        I+ LDA +++Q  Q +++ Q V  + V +  D  RA+ RA AS  +LP FT GD+V+VARVR+SG   KL S WTGP
Sbjct: 1400 PAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGP 1520
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BLAST of mRNA_H-paniculata_contig34979.9311.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.100e-5
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  247 RARASGEELPHFTAGDFVLVARVRKSGAHAKLVSRWTGP 363
            RA AS  +LP FT GD+V+VARVR+SG   KL S WTGP
Sbjct:    4 RAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGP 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34979.9311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE1.160e-2244.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.870e-2245.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAI3_9PHAE1.100e-564.10Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34979contigH-paniculata_contig34979:243..608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.2588305-CDS-H-paniculata_contig34979:242..6081622930079.2588305-CDS-H-paniculata_contig34979:242..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34979 243..608 +
1691481138.08027-CDS-H-paniculata_contig34979:242..6081691481138.08027-CDS-H-paniculata_contig34979:242..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34979 243..608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34979.9311.1prot_H-paniculata_contig34979.9311.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34979 243..608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34979.9311.1

>prot_H-paniculata_contig34979.9311.1 ID=prot_H-paniculata_contig34979.9311.1|Name=mRNA_H-paniculata_contig34979.9311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
PAVQWALNTSWRLSIHTTPFTLMHGRERRIRFAAMAVEQDGECTIEPLDA
GEVQQMAQRIVEAQQVRRRDVLRCKDARRAKSRARASGEELPHFTAGDFV
LVARVRKSGAHAKLVSRWTGP*
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mRNA from alignment at H-paniculata_contig34979:243..608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34979.9311.1 ID=mRNA_H-paniculata_contig34979.9311.1|Name=mRNA_H-paniculata_contig34979.9311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig34979:243..608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCGGTGCAGTGGGCGCTGAACACATCTTGGAGACTGAGCATTCACAC
CACGCCATTTACGCTTATGCATGGAAGGGAACGTCGAATAAGGTTCGCGG
CGATGGCAGTCGAGCAGGACGGGGAGTGCACAATAGAGCCGCTGGATGCG
GGGGAAGTACAGCAGATGGCACAGCGTATTGTCGAGGCCCAGCAGGTGAG
GCGCCGCGATGTTCTCCGGTGCAAAGATGCAAGAAGAGCAAAGAGTCGCG
CGCGAGCGAGTGGCGAGGAACTCCCGCACTTCACGGCGGGTGATTTCGTG
CTCGTTGCGCGGGTACGCAAATCAGGGGCGCATGCGAAGCTGGTGAGTCG
TTGGACGGGGCCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34979:243..608+

>mRNA_H-paniculata_contig34979.9311.1 ID=mRNA_H-paniculata_contig34979.9311.1|Name=mRNA_H-paniculata_contig34979.9311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig34979:243..608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCGGTGCAGTGGGCGCTGAACACATCTTGGAGACTGAGCATTCACAC
CACGCCATTTACGCTTATGCATGGAAGGGAACGTCGAATAAGGTTCGCGG
CGATGGCAGTCGAGCAGGACGGGGAGTGCACAATAGAGCCGCTGGATGCG
GGGGAAGTACAGCAGATGGCACAGCGTATTGTCGAGGCCCAGCAGGTGAG
GCGCCGCGATGTTCTCCGGTGCAAAGATGCAAGAAGAGCAAAGAGTCGCG
CGCGAGCGAGTGGCGAGGAACTCCCGCACTTCACGGCGGGTGATTTCGTG
CTCGTTGCGCGGGTACGCAAATCAGGGGCGCATGCGAAGCTGGTGAGTCG
TTGGACGGGGCCATAGCCTGCGGTGCAGTGGGCGCTGAACACATCTTGGA
GACTGAGCATTCACACCACGCCATTTACGCTTATGCATGGAAGGGAACGT
CGAATAAGGTTCGCGGCGATGGCAGTCGAGCAGGACGGGGAGTGCACAAT
AGAGCCGCTGGATGCGGGGGAAGTACAGCAGATGGCACAGCGTATTGTCG
AGGCCCAGCAGGTGAGGCGCCGCGATGTTCTCCGGTGCAAAGATGCAAGA
AGAGCAAAGAGTCGCGCGCGAGCGAGTGGCGAGGAACTCCCGCACTTCAC
GGCGGGTGATTTCGTGCTCGTTGCGCGGGTACGCAAATCAGGGGCGCATG
CGAAGCTGGTGAGTCGTTGGACGGGGCCATAG
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