mRNA_H-paniculata_contig3496.9310.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3496.9310.1
Unique NamemRNA_H-paniculata_contig3496.9310.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A6H5KEX7_9PHAE (Ribosomal_S13_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX7_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 5.870e-88
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 3 
Query: 1605 ALKMGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            + KMGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVT+HVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILR+LK +GLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA
Sbjct:   35 SFKMGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 188
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A6H5KYF2_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF2_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 2.080e-82
Identity = 139/152 (91.45%), Postives = 147/152 (96.71%), Query Frame = 3 
Query: 1611 KMGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            KMGRMHSGGKGISKSSLPY+R  P WLK+SAQEVT+HVCKLAKKGLTPSQIGVILRDSNGIAQV AITG+KILR+LK +GLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKY+S+SASALVA
Sbjct:   20 KMGRMHSGGKGISKSSLPYRRRVPLWLKVSAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 171
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BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: D7FP13_ECTSI (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP13_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 1.080e-79
Identity = 137/162 (84.57%), Postives = 146/162 (90.12%), Query Frame = 3 
Query: 1581 IPLREWVRALKMGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            +P     R        SGGKGISKSSLPY+RS PSWLK+SAQEVT+HVCKLAKKGLTPSQIGVILRDSNGIAQV AITG+KILR+LK +GLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKY+S+SASALVA
Sbjct:    8 VPFAHLRRVFSHKTSSSGGKGISKSSLPYRRSAPSWLKVSAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 169
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A7S2V1V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1V2_9STRA)

HSP 1 Score: 263 bits (671), Expect = 3.070e-79
Identity = 132/151 (87.42%), Postives = 145/151 (96.03%), Query Frame = 3 
Query: 1614 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            MGRMHS GKG++ S+LPYKR+PPSWLKISA++V DHVCKLAKKGL+PSQIGVILRDSNGIAQVR++TGSK+LRLLK +GLA EIPEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRTNRKLA NWKYESS+ASALVA
Sbjct:    1 MGRMHSRGKGMASSALPYKRTPPSWLKISAKDVEDHVCKLAKKGLSPSQIGVILRDSNGIAQVRSVTGSKVLRLLKKNGLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTNRKLAPNWKYESSTASALVA 151
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: H3G9F0_PHYRM (Ribosomal_S13_N domain-containing protein n=30 Tax=Oomycota TaxID=4762 RepID=H3G9F0_PHYRM)

HSP 1 Score: 251 bits (642), Expect = 4.540e-75
Identity = 123/151 (81.46%), Postives = 142/151 (94.04%), Query Frame = 3 
Query: 1614 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            MGRMHS GKG+SKS+ PYKRSPPSWLK+++++V DH+CK AKKGLTPSQIGVILRDS+GIAQV+++TGSK+LRLLK +GLA E+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYR NRKL+ NWKYES++AS LVA
Sbjct:    1 MGRMHSHGKGMSKSARPYKRSPPSWLKVTSEDVEDHICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESATASTLVA 151
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A6V1RUJ0_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUJ0_HETAK)

HSP 1 Score: 251 bits (642), Expect = 4.540e-75
Identity = 125/151 (82.78%), Postives = 141/151 (93.38%), Query Frame = 3 
Query: 1614 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            MGRMH+ GKG+SKSS PYKRSPPSWLKI+A++V  H+CKLAKKGLTPSQIGV+LRDSNGIAQV+++TGSKILR+LK +GLA EIPEDLYMLIKKAV VRKHLERNR+D D+KFRLILIESRIHRLARYYR NRKLA+NWKYES +ASALVA
Sbjct:    1 MGRMHTSGKGMSKSSRPYKRSPPSWLKITARDVETHICKLAKKGLTPSQIGVMLRDSNGIAQVKSVTGSKILRILKKNGLAPEIPEDLYMLIKKAVQVRKHLERNRKDHDAKFRLILIESRIHRLARYYRLNRKLASNWKYESDTASALVA 151
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A6U5KTU7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KTU7_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.380e-73
Identity = 120/151 (79.47%), Postives = 140/151 (92.72%), Query Frame = 3 
Query: 1614 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            MGRMH+ GKGISKS+LPYKRSPPSWLKI++ +V +H+CKLAKKGLTPSQIGV+LRD +GIAQVR++TGSKI+R+LKV GLA EIPEDLYMLIKKAV+VRKHLE+NR+DKDSKFRLILIESRIHRLARYYRT RKL  NW+Y S++AS +VA
Sbjct:    1 MGRMHAPGKGISKSALPYKRSPPSWLKITSSDVEEHICKLAKKGLTPSQIGVVLRDQHGIAQVRSVTGSKIVRILKVQGLAPEIPEDLYMLIKKAVSVRKHLEKNRKDKDSKFRLILIESRIHRLARYYRTTRKLPPNWRYASATASTMVA 151
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A7S0SUB1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUB1_9STRA)

HSP 1 Score: 246 bits (629), Expect = 3.310e-73
Identity = 126/151 (83.44%), Postives = 139/151 (92.05%), Query Frame = 3 
Query: 1614 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            MGRMHSGGKGISKSSLPYKRSPPSWLKISA +V D V KLAKKGLTPSQIGVILRD +G+AQV+++TG+K +R+LK  GLA  IPEDLYMLIKKAVAVRKHLERN++DKDSKFRLILIESRIHRLARYYRT RKL ANWKYES++ASALVA
Sbjct:    1 MGRMHSGGKGISKSSLPYKRSPPSWLKISAAQVEDLVIKLAKKGLTPSQIGVILRDQHGVAQVKSVTGNKTVRILKKAGLAPTIPEDLYMLIKKAVAVRKHLERNKKDKDSKFRLILIESRIHRLARYYRTARKLEANWKYESATASALVA 151
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A2H9ZZV5_9ASPA (40S ribosomal protein S13 n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2H9ZZV5_9ASPA)

HSP 1 Score: 245 bits (625), Expect = 1.240e-72
Identity = 120/151 (79.47%), Postives = 138/151 (91.39%), Query Frame = 3 
Query: 1614 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            MGRMHS GKGIS S+LPYKR+PPSWLKIS+Q+V D++CK AKKGLTPSQIGVILRDS+GIAQV+++TGSKILR+LK HGLA EIPEDLY LIKKAVA+RKHLERNR+DKDSKFRLIL+ESRIHRLARYY+  +KL   WKYES++AS LVA
Sbjct:    1 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Match: A0A068UKI7_COFCA (Ribosomal_S13_N domain-containing protein n=6 Tax=cellular organisms TaxID=131567 RepID=A0A068UKI7_COFCA)

HSP 1 Score: 245 bits (625), Expect = 1.240e-72
Identity = 119/151 (78.81%), Postives = 139/151 (92.05%), Query Frame = 3 
Query: 1614 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 2066
            MGRMHS GKGIS S+LPYKR+PPSWLKIS+Q+V D++CK AK+G+TPSQIGVILRDS+GIAQV+++TGSKILR+LK HGLA EIPEDLY LIKKAVA+RKHLERNR+DKDSKFRLIL+ESRIHRLARYY+  +KL  NWKYES++AS LVA
Sbjct:    1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKRGMTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPNWKYESTTASTLVA 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3496.9310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX7_9PHAE5.870e-8896.10Ribosomal_S13_N domain-containing protein n=2 Tax=... [more]
A0A6H5KYF2_9PHAE2.080e-8291.45Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
D7FP13_ECTSI1.080e-7984.57Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A7S2V1V2_9STRA3.070e-7987.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3G9F0_PHYRM4.540e-7581.46Ribosomal_S13_N domain-containing protein n=30 Tax... [more]
A0A6V1RUJ0_HETAK4.540e-7582.78Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A6U5KTU7_9STRA2.380e-7379.47Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0SUB1_9STRA3.310e-7383.44Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A2H9ZZV5_9ASPA1.240e-7279.4740S ribosomal protein S13 n=3 Tax=Mesangiospermae ... [more]
A0A068UKI7_COFCA1.240e-7278.81Ribosomal_S13_N domain-containing protein n=6 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3496contigH-paniculata_contig3496:8863..12394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.8
Seed ortholog evalue1.2e-74
Seed eggNOG ortholog2880.D7FJH0
Preferred nameRPS13
KEGG koko:K02953
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000462,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033119,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070181,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:1990932
EggNOG free text desc.small ribosomal subunit rRNA binding
EggNOG OGsCOG0184@1,KOG0400@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons3
Model size2744
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3496.9310.1prot_H-paniculata_contig3496.9310.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3496 9538..10781 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.1587725-UTR-H-paniculata_contig3496:8862..95371622930079.1587725-UTR-H-paniculata_contig3496:8862..9537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3496 8863..9537 -
1691481138.0378537-UTR-H-paniculata_contig3496:8862..95371691481138.0378537-UTR-H-paniculata_contig3496:8862..9537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3496 8863..9537 -
1622930079.2186475-UTR-H-paniculata_contig3496:10781..123941622930079.2186475-UTR-H-paniculata_contig3496:10781..12394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3496 10782..12394 -
1691481138.0724766-UTR-H-paniculata_contig3496:10781..123941691481138.0724766-UTR-H-paniculata_contig3496:10781..12394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3496 10782..12394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.1726327-CDS-H-paniculata_contig3496:9537..97581622930079.1726327-CDS-H-paniculata_contig3496:9537..9758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3496 9538..9758 -
1691481138.0482738-CDS-H-paniculata_contig3496:9537..97581691481138.0482738-CDS-H-paniculata_contig3496:9537..9758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3496 9538..9758 -
1622930079.1919546-CDS-H-paniculata_contig3496:10136..102241622930079.1919546-CDS-H-paniculata_contig3496:10136..10224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3496 10137..10224 -
1691481138.058053-CDS-H-paniculata_contig3496:10136..102241691481138.058053-CDS-H-paniculata_contig3496:10136..10224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3496 10137..10224 -
1622930079.2056477-CDS-H-paniculata_contig3496:10634..107811622930079.2056477-CDS-H-paniculata_contig3496:10634..10781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3496 10635..10781 -
1691481138.0651515-CDS-H-paniculata_contig3496:10634..107811691481138.0651515-CDS-H-paniculata_contig3496:10634..10781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3496 10635..10781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3496.9310.1

>prot_H-paniculata_contig3496.9310.1 ID=prot_H-paniculata_contig3496.9310.1|Name=mRNA_H-paniculata_contig3496.9310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTDHVCKLAKKGLTPSQI
GVILRDSNGIAQVRAITGSKILRLLKVHGLAAEIPEDLYMLIKKAVAVRK
HLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALV
A*
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mRNA from alignment at H-paniculata_contig3496:8863..12394-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3496.9310.1 ID=mRNA_H-paniculata_contig3496.9310.1|Name=mRNA_H-paniculata_contig3496.9310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3532bp|location=Sequence derived from alignment at H-paniculata_contig3496:8863..12394- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGACTTCTGTCGACCCCCCCCCAACTGTTCAAGGTGAGACTGCTGA
CTGGCCCATTCTTGCCAGGTCTTATGCTGTGGGTGTCGCTGTTGTCGGTT
GACTTTGCATCAAGAATGCCCCCATGTTTTTCCCCTTACTCTGTTGTGGT
GTTTTGTGAAGTAGGGTTGCTGCCTAGCCATCCATCCACCCAATTTGTGT
CGATGGGTTGGTCGTCTCTTCTGTTGCACAAGTAAGTTAGTGGTGCGTGC
CCTCGTTATTCGAACACAAGGTGTGAGATAGGGTGGAGGAGGGGAGATTA
GGTTCCCCTGCTCTCCCAGTTCGGCGCCTTATACTGGATTGCTAGAGAGA
CAATCGCGGACTATCGGCCGCTCGGTTGACTCGTTCTTACAATTTGTCAG
ATGCCTAGCCACTGACATTCGTGTATACGGACCGTACTCCATGCTTCCTG
TATTATCGGGCAACCTCATGTGTTGTACATGAAATATAGTCGTCAGGAGT
CCTTTACCGGGAAGCCTCGTAGGTTTGGGGGTGAAGTGTTCCACGATGGC
GTCTCCGGGAAAACCTAACCCAATAGGTAAAATCGGAGCAACAAACTGTC
AAGAGCTGGATGCTAAATAGGCACCATACCGATATCACCAACCCTCCACG
AAGTAGTCTGTGCGGTCGGGGGGTCTCATGTCTCGTGGGTATGTCGAGAC
GGTTGGACGTACTCTAGGTGGACGTAATGCGAGTAACTTTGACTTCCAAA
AATGAATACTCGACCGTTGGGGATGGAGCAAACTGGGTGCAGTCAAAATG
ATCTTGAGTGAAGTAAGTTAGAGATGAATTATCTTGACGTGTAGTGGAAC
AACCACCAGCTACTCTTTTTCCATACACTTGACCACGAAACGAAATGAGT
AGCCACACAAGTTGTGAAATATGTGCTCGACAAGCTGTCACTGTCCCATG
GTCGCAGCAAGTCGAAGAGATCTTCCGGTACGTACATGAGAAGCAGCCAA
CTGTAGAGTATTATAACCAGATCACGTAATTCAACATGTTCTGAACTCGT
TTCCGTGAGTATTTATTATATTCCAGCGGCTAAATGAGAACGTCCACATT
TCTGTGGACCCGTCCCGTTTGGCGACATGGTGAATTGGTTCAACATAGGT
AAAATCCGAGCATCACGTGTGAACAGTAGTTTTGGGCTCGTACATGGTAC
TAACAATGTCATCGGGTGCGATGAACCTACCCTTGATGCCGTGAAGCATA
CAACGGGCGGGCCAAATATGAAGTTATTTAATATCGACACTGCGATTGCG
TTGAGGATGGTCAGGTCGATGGAAGCAATCGCCCCGCTCCAATCCTTCAA
GTCGTGAACACAGTTTTGAGTAACGATACTATACCAATAGTGCGTTGTAC
TTTTCCCAGTTACGATCGTGGAGCCAACACGCTCGTCGATATCACAGCCG
TGCTGGGCACACAGGGACCCGCTTGGTCGAATTCGCCTCAGAATTCACGA
CAACAGGCTGACGGGTGCCCTGATAACCTTCCTTCCCTCTCCTTCCTCCA
TCTGCGACATGTATGTTGTGATCCTTTCCCATTCCACTTCGGGAATGGGT
GCGCGCATTGAAGATGGGGCGTATGCACAGCGGCGGAAAGGGTATCTCAA
AGAGTTCCCTTCCATACAAAAGGAGCCCCCCCTCGTGGCTCAAAATCTCC
GCCCAGGAGGTCACGGATCACGTGTGCAAGCTTGCCAAGAAGGGGCTCAC
CCCATCCCAGGTAATTATTGCGTTTCCTTTCTGCCGATACCCTCTTGGAA
AGCAGATTGAACCTTCTGCAGTCAGCATGGTTGGAAAGTCGTCGACGGTT
TAAGTCCCGAAACCTTCGGGGGAGGCGATTTTTGTGTTCTAGTAATCCTT
CAAATTCAGAGAGAAGGGGTGTTTCGAAGATTCAGAGAAACTGTTGGTGT
GTTCACGTTGTCATATCTGTTGATATATAAATTTGAGATATAGCGACAAT
GTGAAATATTTTAGAAGATTCCATTTTCGCCGAAGTGTGTCCAAGAGCAA
GATACTGGATGACTTGGTGCAAGTGTCATCACTTATAATTGATTGTTTGA
GTTCATCCTCTACGGTCACCTGTTTACCCCTATTTTGCCCAAAATTCGCC
CTTCGTGCTTGTTCGCGTAGATCGGTGTGATTCTGCGTGACTCCAACGGA
ATTGCCCAGGTCCGTGCTATTACTGGCTCGAAGATCCTTCGTCTGCTCAA
AGTTCACGGTAAGCCGTGTCAAATGCGAAACTACGCGTCGGTTACTTGTT
TCCTCGTGAACGCCTGTCGACACACATGAAGAATTTTACAGTCGATGTTT
CTATTTTCGGAAACGTACGAGATACCACTGTCAGTTCACCGATGATGTTC
CTGCATTGGCGGTTTATTCTAACCGGTAAAAATCGCAAATCAGTTTTTGC
CTTCTCTGATGGACATTTTCCGTGGAAACCTGAAATCAATATTGGAAACG
TACACAAAAGTTTGTAAAAGTTATCTCGGATGTGTCCAATCCATGTGATC
GTTGCAAGAGACGCTTCACAGTACGTCTTGCCCCACATGGCTTCACCTTG
AGAATTCCCTGAACAAATGCGCGACCTTGAATGCAGGCCTTGCCGCTGAG
ATTCCGGAGGACTTGTACATGCTCATTAAAAAGGCTGTGGCCGTGCGCAA
GCACTTGGAGCGGAACCGCCGCGACAAGGACTCGAAGTTTCGCCTTATCC
TTATTGAGTCCCGTATCCACCGCCTCGCCCGGTACTACCGCACAAACCGG
AAGCTGGCGGCCAACTGGAAATACGAGAGCTCATCCGCCTCTGCCCTGGT
GGCTTAGAAGGAACGAGATTGAAATGCGAATTCCGCATGTTTGGTCTCCT
GCGTACGTTCAATGGTGTTGATTACAGTCATTTTACTGAGTTGTGCCGGA
GAATGAACGAATCAGTGAGGAAATGATTCCGTTGACCTACGTCACGAATG
AGAATTGTCATTTTTGGGGATTTGTTGACGGGCGATCCTGTTGGTCATCT
CGGACTTGTCTAATCTGATTGGGATAGGTGTCGAGCAGACCAACCAGTGT
CGAACGTGGAAGAGAGGCGACGAAGGAGCAAGAAGCGAAGCAAAATGAAA
AGCAACCGAAGGTTTTATCCTGTTTTGGTATTTGAATGTTCACTTGATAA
ATGGCTGAAGACCTGCAGCGGTGTGGACTGTGATTCTACACAGTGCGCTC
CAGAAGTTTTTTTAACTGCATTATTGGGCACGATGTGATCGAGAAGAACC
AACACTGTCCAGGTGTTCTTCACAGCATCAAATTGTACGTGGTAAATAGG
CCTAACCACGAAGTTTACGGCTGGACATAAGTTTTTCCCAAGTTAATCTC
GTTCTCACAGGTGGTAAGATCACCCCGCCTGGCCTTATGGATAGACCATT
TGATGTCCCATTAATTGAATATCTCAAATCAACAGTTTGGATATGAAGGC
CATCAACTGATGAATTTAACCATGGTTGTAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3496:8863..12394-

>mRNA_H-paniculata_contig3496.9310.1 ID=mRNA_H-paniculata_contig3496.9310.1|Name=mRNA_H-paniculata_contig3496.9310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig3496:8863..12394- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCGTATGCACAGCGGCGGAAAGGGTATCTCAAAGAGTTCCCTTCC
ATACAAAAGGAGCCCCCCCTCGTGGCTCAAAATCTCCGCCCAGGAGGTCA
CGGATCACGTGTGCAAGCTTGCCAAGAAGGGGCTCACCCCATCCCAGATG
GGGCGTATGCACAGCGGCGGAAAGGGTATCTCAAAGAGTTCCCTTCCATA
CAAAAGGAGCCCCCCCTCGTGGCTCAAAATCTCCGCCCAGGAGGTCACGG
ATCACGTGTGCAAGCTTGCCAAGAAGGGGCTCACCCCATCCCAGATCGGT
GTGATTCTGCGTGACTCCAACGGAATTGCCCAGGTCCGTGCTATTACTGG
CTCGAAGATCCTTCGTCTGCTCAAAGTTCACGATCGGTGTGATTCTGCGT
GACTCCAACGGAATTGCCCAGGTCCGTGCTATTACTGGCTCGAAGATCCT
TCGTCTGCTCAAAGTTCACGGCCTTGCCGCTGAGATTCCGGAGGACTTGT
ACATGCTCATTAAAAAGGCTGTGGCCGTGCGCAAGCACTTGGAGCGGAAC
CGCCGCGACAAGGACTCGAAGTTTCGCCTTATCCTTATTGAGTCCCGTAT
CCACCGCCTCGCCCGGTACTACCGCACAAACCGGAAGCTGGCGGCCAACT
GGAAATACGAGAGCTCATCCGCCTCTGCCCTGGTGGCTTAGGCCTTGCCG
CTGAGATTCCGGAGGACTTGTACATGCTCATTAAAAAGGCTGTGGCCGTG
CGCAAGCACTTGGAGCGGAACCGCCGCGACAAGGACTCGAAGTTTCGCCT
TATCCTTATTGAGTCCCGTATCCACCGCCTCGCCCGGTACTACCGCACAA
ACCGGAAGCTGGCGGCCAACTGGAAATACGAGAGCTCATCCGCCTCTGCC
CTGGTGGCTTAG
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