mRNA_H-paniculata_contig3494.9308.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3494.9308.1
Unique NamemRNA_H-paniculata_contig3494.9308.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3494.9308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3494contigH-paniculata_contig3494:8021..8757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.7569027-CDS-H-paniculata_contig3494:8020..81481622930078.7569027-CDS-H-paniculata_contig3494:8020..8148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3494 8021..8148 +
1691481137.956791-CDS-H-paniculata_contig3494:8020..81481691481137.956791-CDS-H-paniculata_contig3494:8020..8148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3494 8021..8148 +
1622930078.7742248-CDS-H-paniculata_contig3494:8654..87571622930078.7742248-CDS-H-paniculata_contig3494:8654..8757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3494 8655..8757 +
1691481137.9658825-CDS-H-paniculata_contig3494:8654..87571691481137.9658825-CDS-H-paniculata_contig3494:8654..8757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3494 8655..8757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3494.9308.1prot_H-paniculata_contig3494.9308.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3494 8021..8757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3494.9308.1

>prot_H-paniculata_contig3494.9308.1 ID=prot_H-paniculata_contig3494.9308.1|Name=mRNA_H-paniculata_contig3494.9308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
GSSREIETRPDSGGKHLLQFGPNIAAVALIFALLLTAVVLLIRRSKVKPK
AQAEHSQQEDEQRGTGSSAQRQSSTNG
back to top

mRNA from alignment at H-paniculata_contig3494:8021..8757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3494.9308.1 ID=mRNA_H-paniculata_contig3494.9308.1|Name=mRNA_H-paniculata_contig3494.9308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at H-paniculata_contig3494:8021..8757+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGTTCACGTGAGATTGAGACCCGGCCTGATTCTGGAGGGAAGCACCT
GTTACAATTTGGTCCGAACATTGCGGCTGTTGCCCTGATCTTCGCTTTGT
TGTTGACGGCCGTCGTCCTACTCATAAGGTAAAAATAGCCCAGCGCAATA
CTCCATCCAGCGCCCTACAGTGTTACGCACAGCGGCAATTGGATATGATA
CTTGCCCTGACCTTAACATACGAAACGACTTCTCCCAGTTTCTCTGGGTT
GAAAGTGCCCGCTGTGTTGTCGTGCTTATACGTTGTTTGTCCGCCACCAT
GTTCTGATAAGTTTGTCAGTTGAGAGACATTCGCAAGGATCAAATGGTAA
AACCCGCCGCTCGCGGGTACATTATCCGACCCGAGTAAAATTCTATACTC
AAACACGAGGCACACGAAAACCGGCAACACCGACAACAACGACAACAGCT
CGACTTGCCACTCTACTTATTGCGTATTTCGTCCTCCGACTTTCAATACC
TCGTTTAAACGATGATCGTCATTCCCACTAGCTTTCGAACGTACTACTGT
AGATCGTCGGCATCAAGAATGGCTTTGTCTGATATGTTGAACGTGCAACG
TTGTTACTGTGCCATGCATTTTCTGCTATTTTAGGCGCAGCAAGGTGAAA
CCAAAAGCCCAAGCTGAGCACTCGCAACAGGAAGACGAGCAGAGGGGTAC
GGGAAGCTCGGCGCAAAGACAATCGTCCACCAACGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3494:8021..8757+

>mRNA_H-paniculata_contig3494.9308.1 ID=mRNA_H-paniculata_contig3494.9308.1|Name=mRNA_H-paniculata_contig3494.9308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig3494:8021..8757+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGTTCACGTGAGATTGAGACCCGGCCTGATTCTGGAGGGAAGCACCT
GTTACAATTTGGTCCGAACATTGCGGCTGTTGCCCTGATCTTCGCTTTGT
TGTTGACGGCCGTCGTCCTACTCATAAGGGAAGTTCACGTGAGATTGAGA
CCCGGCCTGATTCTGGAGGGAAGCACCTGTTACAATTTGGTCCGAACATT
GCGGCTGTTGCCCTGATCTTCGCTTTGTTGTTGACGGCCGTCGTCCTACT
CATAAGGCGCAGCAAGGTGAAACCAAAAGCCCAAGCTGAGCACTCGCAAC
AGGAAGACGAGCAGAGGGGTACGGGAAGCTCGGCGCAAAGACAATCGTCC
ACCAACGGCGCGCAGCAAGGTGAAACCAAAAGCCCAAGCTGAGCACTCGC
AACAGGAAGACGAGCAGAGGGGTACGGGAAGCTCGGCGCAAAGACAATCG
TCCACCAACGGC
back to top