mRNA_H-paniculata_contig3494.9307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3494.9307.1
Unique NamemRNA_H-paniculata_contig3494.9307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 5.770e-38
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKVAARSDGGKDAPSLVRKLEQATKRR 252
            RLPLE+LECFY VPLNVAA++LNVSLTMLKKLCRAYGV RWPHRQVSSLDKT ++LE K+ AR DGGKDAPSLVRKL QA KRR
Sbjct:  474 RLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKARRDGGKDAPSLVRKLTQARKRR 557          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.880e-37
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKVAARSDGGKDAPSLVRKLEQATKRR 252
            RLPLE+LECFY VPLNVAA++LNVSLTMLKKLCRAYGV RWPHRQVSSLDKT ++LE K+  R DGGKDAPSLVRKL QA KRR
Sbjct:  474 RLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKTRRDGGKDAPSLVRKLTQARKRR 557          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.150e-24
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKVAARSD 195
            RLP+ +LE FY VPLN+AA EL+VSLTMLKKLCR YG+ RWPHRQVSSL+K++ +LE K+   SD
Sbjct:   12 RLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASD 76          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.500e-14
Identity = 34/84 (40.48%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKVAARSDGGKDAPSLVRKLEQATKRR 252
            R+P+E++  ++  PL V+AE +++S+T LK+LCR +GV RWPHRQ+S L++T+  LE++  A + G ++  ++  +L Q  +RR
Sbjct:   67 RIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRTLGDLEAQHDA-ARGEEEIAAVEEELRQLHRRR 149          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.770e-14
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIAR 165
            R+ L +LE  Y +PL  AA++L VS TMLKKLCR YG+ RWPHRQ+ S+DK + +
Sbjct:   11 RVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQK 65          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: A0A7S3YET5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YET5_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 1.860e-13
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKVAARSDGGKDAPSLVRKLE 234
            R+PL +LE  Y +PL   A+++ VSLTM+K++CR Y + RWPHRQ+ S+ KT+ +L+ ++        DA  ++R+++
Sbjct:  252 RIPLHILESKYELPLKEVADQIGVSLTMMKQICRHYKIKRWPHRQMKSIMKTLHQLKDRLNMVDPNSSDAQEIMRQVQ 329          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.340e-13
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   10 LEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKV 180
            LE+L+ FY VPL   A+EL +SLT+LKK+CR YG+ RWPHRQ+ S++K+   L  ++
Sbjct:   16 LELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERI 72          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-13
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKV 180
            ++ LE+L+ +Y VPL   A+EL +SLT+LKK+CR +G+ RWPHRQ+ SL+KT   L+ + 
Sbjct:   10 QITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERA 69          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.630e-13
Identity = 33/84 (39.29%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 RLPLEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKVAARSDGGKDAPSLVRKLEQATKRR 252
            R+P+E++  ++  PL V+AE +++S+T LK+LCR +GV RWPHRQ+S L++ +  LE++  A + G ++  ++  +L Q  +RR
Sbjct:   68 RIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRALGDLEAQHDA-ARGEEEIAAVEEELRQLHRRR 150          
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 71.2 bits (173), Expect = 1.110e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   10 LEMLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIARLESKV 180
            LE+L+ +Y VPL   A+EL +SLT+LKK+CR +G+ RWPHRQ+ S++K I  L  ++
Sbjct:   16 LELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERI 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3494.9307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE17_9PHAE5.770e-3883.33RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FS12_ECTSI1.880e-3782.14Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A835Z7T4_9STRA4.150e-2467.69RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
D7FN15_ECTSI3.500e-1440.48Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A835YW93_9STRA4.770e-1456.36RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S3YET5_HETAK1.860e-1339.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z1M5_9STRA3.340e-1352.63Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A835YTG3_9STRA4.400e-1350.00Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A6H5KFL8_9PHAE5.630e-1339.29RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
H6WBB7_VAULI1.110e-1250.88Putative NIN-like transcription factor n=1 Tax=Vau... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3494contigH-paniculata_contig3494:5291..5542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.0
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog3218.PP1S823_1V6.1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0010154,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051302,GO:0060255,GO:0061458,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.RWP-RK domain-containing protein
EggNOG OGs28K91@1,2QSPQ@2759,37RG9@33090,3GK3P@35493
Ec32 ortholog descriptionNIN-like transcription factor
Ec32 orthologEc-12_006900.1
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.8204603-CDS-H-paniculata_contig3494:5290..55271622930078.8204603-CDS-H-paniculata_contig3494:5290..5527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3494 5291..5527 -
1691481137.9749384-CDS-H-paniculata_contig3494:5290..55271691481137.9749384-CDS-H-paniculata_contig3494:5290..5527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3494 5291..5527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.8713212-UTR-H-paniculata_contig3494:5527..55421622930078.8713212-UTR-H-paniculata_contig3494:5527..5542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3494 5528..5542 -
1691481137.9852285-UTR-H-paniculata_contig3494:5527..55421691481137.9852285-UTR-H-paniculata_contig3494:5527..5542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3494 5528..5542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3494.9307.1prot_H-paniculata_contig3494.9307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3494 5291..5527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3494.9307.1

>prot_H-paniculata_contig3494.9307.1 ID=prot_H-paniculata_contig3494.9307.1|Name=mRNA_H-paniculata_contig3494.9307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MLECFYRVPLNVAAEELNVSLTMLKKLCRAYGVTRWPHRQVSSLDKTIAR
LESKVAARSDGGKDAPSLVRKLEQATKRR
back to top

mRNA from alignment at H-paniculata_contig3494:5291..5542-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3494.9307.1 ID=mRNA_H-paniculata_contig3494.9307.1|Name=mRNA_H-paniculata_contig3494.9307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig3494:5291..5542- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCCGCTAGAGATGCTAGAGTGCTTCTATCGTGTGCCCCTTAATGT GGCTGCCGAAGAGCTCAACGTGAGTCTCACTATGCTGAAGAAACTGTGTC GGGCGTATGGTGTCACACGTTGGCCTCATCGCCAAGTGAGCAGCCTTGAT AAAACCATCGCTCGGCTGGAGAGCAAAGTTGCAGCACGTAGCGACGGCGG TAAAGACGCCCCATCGCTCGTGAGGAAACTCGAGCAGGCGACGAAGCGGC GG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3494:5291..5542-

>mRNA_H-paniculata_contig3494.9307.1 ID=mRNA_H-paniculata_contig3494.9307.1|Name=mRNA_H-paniculata_contig3494.9307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig3494:5291..5542- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGAGTGCTTCTATCGTGTGCCCCTTAATGTGGCTGCCGAAGAGCT
CAACGTGAGTCTCACTATGCTGAAGAAACTGTGTCGGGCGTATGGTGTCA
CACGTTGGCCTCATCGCCAAGTGAGCAGCCTTGATAAAACCATCGCTCGG
CTGGAGAGCAAAGTTGCAGCACGTAGCGACGGCGGTAAAGACGCCCCATC
GCTCGTGAGGAAACTCGAGCAGGCGACGAAGCGGCGGATGCTAGAGTGCT
TCTATCGTGTGCCCCTTAATGTGGCTGCCGAAGAGCTCAACGTGAGTCTC
ACTATGCTGAAGAAACTGTGTCGGGCGTATGGTGTCACACGTTGGCCTCA
TCGCCAAGTGAGCAGCCTTGATAAAACCATCGCTCGGCTGGAGAGCAAAG
TTGCAGCACGTAGCGACGGCGGTAAAGACGCCCCATCGCTCGTGAGGAAA
CTCGAGCAGGCGACGAAGCGGCGG
back to top