mRNA_H-paniculata_contig34935.9306.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34935.9306.1
Unique NamemRNA_H-paniculata_contig34935.9306.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.940e-33
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C    V    R  + V  STTEAEYVA+GD V+E++FLRQIW FMLP++GM CI VFEDNQGA+Q+AQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:   49 IVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELV 141
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.060e-33
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C    V    R  + V  STTEAEYVA+GD V+E++FLRQIW FMLP++GM CI VFEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:   79 IVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 171
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BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 8.180e-33
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C    V    R  + V  STTEAEYV++GD+V+E++FLRQIW FMLP++GM CI +FEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:   72 IVTCGGGAVSWFSRTQKCVTLSTTEAEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 164
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.520e-32
Identity = 58/72 (80.56%), Postives = 68/72 (94.44%), Query Frame = 3 
Query:   75 STTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            STTEAEYVA+GD V+E++FLRQIW FMLP++GM CI +FEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:  116 STTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 187
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.270e-32
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C    V    R  + V  STTEAEYVA+GD V+E++FLRQIW FMLP++GM CI VFEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:  124 IVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 216
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.850e-31
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C   VV    R  + V  STTEA YVA+GD V+E++FLRQ+W FMLPK+GM CI VFEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:  219 IVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 311
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 3.330e-31
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C    V    R  + V  STTEAEYVA+G+ V+ ++FLRQIW FMLP++GM CI VFEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:   84 IVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 176
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.560e-31
Identity = 57/72 (79.17%), Postives = 68/72 (94.44%), Query Frame = 3 
Query:   75 STTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            STTEAEYVA+GD V+E++FLRQIW FMLP++G+ CI +FEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:  181 STTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 252
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5KIK4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK4_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.350e-31
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C    V    R  + V  STTEAEYVA+GD V+E++FLRQIW FMLP++GM CI +FEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE++
Sbjct:  259 IVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELI 351
[Close]
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 8.240e-31
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 3 
Query:   12 VLSCVEVVVFHGFRGPRDV*RSTTEAEYVAMGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSKHIDVRHHFLREIV 290
            +++C    V    R  + V  STTEAEYVA+GD V+E++FLRQIW FMLP++GM C  VFEDNQGA+QLAQNP+SNSNSKHIDVRHHFLRE+V
Sbjct:  194 IVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELV 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34935.9306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI51_9PHAE6.940e-3366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE7.060e-3367.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7L4_9PHAE8.180e-3365.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE1.520e-3280.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE2.270e-3267.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF9_9PHAE1.850e-3167.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE3.330e-3165.59Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSZ5_9PHAE5.560e-3179.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIK4_9PHAE7.350e-3165.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLT9_9PHAE8.240e-3166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34935contigH-paniculata_contig34935:587..1581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog164328.Phyra86815
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHNV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size995
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34935.9306.1prot_H-paniculata_contig34935.9306.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34935 688..891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.669257-UTR-H-paniculata_contig34935:586..6871622930078.669257-UTR-H-paniculata_contig34935:586..687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34935 587..687 +
1691481137.9315975-UTR-H-paniculata_contig34935:586..6871691481137.9315975-UTR-H-paniculata_contig34935:586..687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34935 587..687 +
1622930078.6976197-UTR-H-paniculata_contig34935:891..15811622930078.6976197-UTR-H-paniculata_contig34935:891..1581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34935 892..1581 +
1691481137.9486043-UTR-H-paniculata_contig34935:891..15811691481137.9486043-UTR-H-paniculata_contig34935:891..1581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34935 892..1581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.6846056-CDS-H-paniculata_contig34935:687..8911622930078.6846056-CDS-H-paniculata_contig34935:687..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34935 688..891 +
1691481137.9409773-CDS-H-paniculata_contig34935:687..8911691481137.9409773-CDS-H-paniculata_contig34935:687..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34935 688..891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34935.9306.1

>prot_H-paniculata_contig34935.9306.1 ID=prot_H-paniculata_contig34935.9306.1|Name=mRNA_H-paniculata_contig34935.9306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MGDSVQELVFLRQIWYFMLPKMGMECISVFEDNQGAVQLAQNPVSNSNSK
HIDVRHHFLREIVAMGL*
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mRNA from alignment at H-paniculata_contig34935:587..1581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34935.9306.1 ID=mRNA_H-paniculata_contig34935.9306.1|Name=mRNA_H-paniculata_contig34935.9306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=995bp|location=Sequence derived from alignment at H-paniculata_contig34935:587..1581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTCCGGAAGTGTTATCATGTGTGGAGGTGGTTGTATTTCATGGTTTT
CGAGGACCCAGAGATGTGTAACGTTCAACAACAGAAGCAGAGTATGTGGC
GATGGGGGATTCTGTGCAGGAGTTAGTGTTTTTGAGGCAGATATGGTATT
TTATGTTACCGAAAATGGGGATGGAGTGTATATCAGTGTTCGAGGATAAC
CAAGGGGCGGTACAGTTGGCGCAGAACCCTGTATCAAACTCGAACTCAAA
GCATATTGATGTTAGGCACCATTTTCTGAGGGAAATTGTAGCAATGGGGC
TCTAATTTCAGTGAAGCATGTATCTTCTGAGTAACAGCATGCTGATATTT
TAACGAAGGCTTTGAGGATTAATTCGTTCGAACTACACCGAAACTATACA
ATGAATATGAGTTGAGTTTTAAGATGATAATTGGGTTTCAAGTTTTCCTT
GGTTTGCCTGGTAGATATGTTTTGGCGGATATGGTCATGTTTTTGTCATG
CGAGGGAGAATGTATCAGTTTTGCCACCCCACGCTACTTCTCGGGGCATG
GGTAAGTAGGGTATTGTAGTACTGGTTTGTTTGTTTCTTGCCGTGGTCTA
TCGCTTTAACAACACAACTTGATTTGATGATGGAATTGGTGGATTCAAAG
ATCAGAGGAGCCGTTCGTTTTCCAATATTGTAGTTGAGGTTTTTATGGAC
AACGATTGCCTGCTTTTCTTGGTTTAGTCTTGAGTTATTTTGGAGGTACA
CAGCAGGGGCGCTATCGATTATTGTCAGGATATAAGTTCGGATGTTTTTG
TGAAAGAAGAATATTTGCTTCTCGTAATCCGCCGATTTTCCGATCAGGGG
GGCTGTTCGGTATGATCGATAAAGGGACGGTTACGTGATAATTCGGTTAC
ATGGAGTTTATATATGGTAGGCATGTTTAGTTGAACTGGATCTGTAAGAG
TCAGGACGGAGTGCATAAGTGCCACCCTCCTTCAATCACTACGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig34935:587..1581+

>mRNA_H-paniculata_contig34935.9306.1 ID=mRNA_H-paniculata_contig34935.9306.1|Name=mRNA_H-paniculata_contig34935.9306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig34935:587..1581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGATTCTGTGCAGGAGTTAGTGTTTTTGAGGCAGATATGGTATTT
TATGTTACCGAAAATGGGGATGGAGTGTATATCAGTGTTCGAGGATAACC
AAGGGGCGGTACAGTTGGCGCAGAACCCTGTATCAAACTCGAACTCAAAG
CATATTGATGTTAGGCACCATTTTCTGAGGGAAATTGTAGCAATGGGGCT
CTAAATGGGGGATTCTGTGCAGGAGTTAGTGTTTTTGAGGCAGATATGGT
ATTTTATGTTACCGAAAATGGGGATGGAGTGTATATCAGTGTTCGAGGAT
AACCAAGGGGCGGTACAGTTGGCGCAGAACCCTGTATCAAACTCGAACTC
AAAGCATATTGATGTTAGGCACCATTTTCTGAGGGAAATTGTAGCAATGG
GGCTCTAA
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