mRNA_H-paniculata_contig3491.9303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3491.9303.1
Unique NamemRNA_H-paniculata_contig3491.9303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: D8LB68_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB68_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.140e-27
Identity = 69/94 (73.40%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    1 RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHLA 282
            R LI+  YLR WF+VDF+ST+PLD + S++L N+DALR TKLIR XXXXXXXXXXXX KMSTFFERY+E+M +NPAV+RLTKL++LMSFAAHLA
Sbjct: 1420 RKLIAGEYLRTWFIVDFVSTVPLDTMFSRMLLNSDALRSTKLIRXXXXXXXXXXXXXLKMSTFFERYQEAMQMNPAVIRLTKLVILMSFAAHLA 1513          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: D8LFK4_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK4_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.670e-11
Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   22 YLRGWFMVDFISTLPLDILLSQL-LQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH 276
            YL+GWF VD IST+P D+L+ Q+ + NA+A   T+L+R XXXXXXXXXXXXX +  F E +EE+ P+ P+ V+L +L+V+M+F+AH
Sbjct:  935 YLKGWFTVDLISTVPWDLLVLQIAVGNANAATSTRLVRXXXXXXXXXXXXXXXIPDFMEEWEENSPLGPSSVKLGRLLVIMAFSAH 1020          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1W0A984_9STRA (Tetrameric potassium-selective cyclic nucleotide gated channel-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A984_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.220e-10
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   10 ISHNYLRGWFMVDFISTLPLDILLS----QLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH-LAVRYHV 297
            I+  YL+ WF +DF+S+ P +  ++    QL+ N+ +L   +LIR+XXXXXXXXXXXXXK+  FF+R EE+  +NP VVRLT+LI L+ F AH LA  +H+
Sbjct:  177 IAKLYLQTWFFLDFVSSFPFEAAVTLFNPQLITNSHSLSSIQLIRIXXXXXXXXXXXXXKLRLFFKRAEENFGLNPGVVRLTRLIFLVLFLAHVLACFFHL 277          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1V9Y795_9STRA (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y795_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.300e-9
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   10 ISHNYLRGWFMVDFISTLPLDILLSQLLQNAD-ALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH 276
            I  +YLRGWFM+DF+STLP+D + S  + N+   L  TK++R+XXXXXXXXXXXXX     F+R  +S+ ++P+  RL KL+++M    H
Sbjct:  736 IIFSYLRGWFMIDFVSTLPIDTIGSYFISNSSQVLASTKILRIXXXXXXXXXXXXXXXGKVFKRLRDSIQLSPSGERLLKLVMIMVLFGH 825          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: T0RE99_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RE99_SAPDV)

HSP 1 Score: 61.2 bits (147), Expect = 9.330e-9
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   10 ISHNYLRGWFMVDFISTLPLDILLS----QLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH-LAVRYH 294
            I+ NY R WF++D +ST PL+  +      ++ N  +L   +L+R XXXXXXXXXXXXX +  FF+R EE+  VNP VVRL +LI ++ F AH LA  +H
Sbjct:  170 IAKNYARTWFLLDLVSTFPLEAAVKLFNPSVVANGHSLASVQLLRXXXXXXXXXXXXXXXLRVFFKRVEETFGVNPGVVRLARLICVVLFLAHVLACMFH 269          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1V9Z891_9STRA (Cyclic nucleotide-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z891_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.280e-8
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   10 ISHNYLRGWFMVDFISTLPLD----ILLSQLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHL 279
            I+  YLR WF++DF+ST PL+    +L   LL N D+L   +L   XXXXXXXXXXXXX +  FF+R EE   +NP  VRL +LI L+ F AHL
Sbjct:  175 IAKLYLRTWFVLDFMSTFPLEGTVRVLFPGLLANTDSLSSIQLXXXXXXXXXXXXXXXXXLRLFFKRVEEVFGLNPGAVRLARLIFLVLFLAHL 268          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A067CSH4_SAPPC (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CSH4_SAPPC)

HSP 1 Score: 59.3 bits (142), Expect = 4.190e-8
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   10 ISHNYLRGWFMVDFISTLPLDILLS----QLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH-LAVRYH 294
            I+ +YLR WF++DF+ST PL+  +      ++ N+ +L   +L+R XXXXXXXXXXXXX +  FF+R EE+   NP  VRL +LI ++ F AH LA  +H
Sbjct:  170 IAKSYLRTWFLLDFVSTFPLEAAVKLFNPSVVANSHSLASVQLLRXXXXXXXXXXXXXXXLRVFFKRVEETFGFNPGGVRLARLIFVVLFLAHVLACMFH 269          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A7S0RXU4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RXU4_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 6.460e-8
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHL 279
            R LIS NY+RGWF VDFIST+PLD++   L  N   L   ++   XXXXXXXXXXXXX     F   E+ + VN +++RL +L+  +  +AHL
Sbjct:   80 RRLISRNYIRGWFGVDFISTVPLDLMGEALDSNVGLLSSMRVFXXXXXXXXXXXXXXXXXXXXFRNLEDVLHVNQSMLRLVRLLFNLCLSAHL 172          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1V9YN52_9STRA (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN52_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.540e-7
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 RSLISHN------YLRGWFMVDFISTLPLDILLSQLLQ---NADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH 276
            R L+ H+      YLRGWF++DF+ST+P+D + S  L    +   L  TK++RV XXXXXXXXXXXX     F+R+ +S+ ++P+  RL KL+++M    H
Sbjct:  718 RQLVVHSKTIMLTYLRGWFLIDFVSTVPIDTIGSIFLHVGNSRQVLASTKILRVFXXXXXXXXXXXXXXGKVFKRFRDSIQLSPSSERLLKLVMIMVLFGH 818          
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A024TQP4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQP4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.870e-7
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNA--DALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHL 279
            ++ I+ +YLRGWF+VDF ST+PL+ ++  +  +   +AL+  K+ R     XXXXXXXX K+     ++EE +  N +V+ L K+++ + F AHL
Sbjct:  167 KTQIAQSYLRGWFLVDFASTMPLESIVKLIYPDTPTNALQTAKIFRGLKLVXXXXXXXXRKIGNMISKFEEEVFANQSVLSLVKILLFLLFLAHL 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB68_ECTSI1.140e-2773.40Cyclic nucleotide-binding domain-containing protei... [more]
D8LFK4_ECTSI4.670e-1154.65Cyclic nucleotide-binding domain-containing protei... [more]
A0A1W0A984_9STRA2.220e-1050.50Tetrameric potassium-selective cyclic nucleotide g... [more]
A0A1V9Y795_9STRA9.300e-948.89Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
T0RE99_SAPDV9.330e-948.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9Z891_9STRA1.280e-852.13Cyclic nucleotide-binding protein n=1 Tax=Achlya h... [more]
A0A067CSH4_SAPPC4.190e-847.00Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S0RXU4_9CHLO6.460e-848.39Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1V9YN52_9STRA1.540e-743.56Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A024TQP4_9STRA2.870e-738.95Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3491contigH-paniculata_contig3491:16481..17142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue4.8e-24
Seed eggNOG ortholog2880.D8LB68
Hectar predicted targeting categoryother localisation
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size304
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.1972752-CDS-H-paniculata_contig3491:16480..166571622930078.1972752-CDS-H-paniculata_contig3491:16480..16657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3491 16481..16657 +
1691481137.734742-CDS-H-paniculata_contig3491:16480..166571691481137.734742-CDS-H-paniculata_contig3491:16480..16657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3491 16481..16657 +
1622930078.288186-CDS-H-paniculata_contig3491:17016..171421622930078.288186-CDS-H-paniculata_contig3491:17016..17142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3491 17017..17142 +
1691481137.748348-CDS-H-paniculata_contig3491:17016..171421691481137.748348-CDS-H-paniculata_contig3491:17016..17142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3491 17017..17142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3491.9303.1prot_H-paniculata_contig3491.9303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3491 16481..17142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3491.9303.1

>prot_H-paniculata_contig3491.9303.1 ID=prot_H-paniculata_contig3491.9303.1|Name=mRNA_H-paniculata_contig3491.9303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNADALRGTKLIRVVRLIR
LFKIFRLLKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHLAVRYHVE
*
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mRNA from alignment at H-paniculata_contig3491:16481..17142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3491.9303.1 ID=mRNA_H-paniculata_contig3491.9303.1|Name=mRNA_H-paniculata_contig3491.9303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=662bp|location=Sequence derived from alignment at H-paniculata_contig3491:16481..17142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTCTGATCAGCCACAACTACCTCCGAGGCTGGTTCATGGTCGACTT CATCTCCACACTACCACTGGATATCTTGCTGTCTCAGTTGCTGCAGAACG CGGACGCTCTTCGGGGGACGAAACTCATCCGCGTCGTTCGACTTATCCGA CTCTTCAAAATATTCAGACTCCTGAAGGTACGACTGCTATGCGGTCACTG CTGTCGTTTGTCACGGCCATAGCGCTGTGGTACCGAGCTCATCCGGTATT GATCCGACCTTGGTTGGTCTGTTTTTATGTTTGAAAACGTTTTTGGCTGT CGAAAGGAACGATACGCCGTTAAATCGGCTAGAAATCAGAAACCGAGAGC CCATGCGGTATACAATACACGACTGAAGACGTACAATTTCCTGAAGTGCA CCACCTATAGATTTCTACTTCGTAGAGAGTTGCGTTGAAGCATTAAAATG CAAACAGTATTTACGCAAGCCCTCGCCCCTCGCCCCTCGCCCCTCGCCCT TGGCTTTTGTCTGCCTGACAAATTGAAATTTTTTAGATGTCGACGTTTTT CGAGCGGTATGAGGAGAGCATGCCAGTGAATCCTGCCGTGGTGCGACTGA CCAAGTTGATCGTACTCATGTCCTTTGCCGCCCATCTGGCGGTGAGATAC CATGTAGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3491:16481..17142+

>mRNA_H-paniculata_contig3491.9303.1 ID=mRNA_H-paniculata_contig3491.9303.1|Name=mRNA_H-paniculata_contig3491.9303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig3491:16481..17142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTCTGATCAGCCACAACTACCTCCGAGGCTGGTTCATGGTCGACTT
CATCTCCACACTACCACTGGATATCTTGCTGTCTCAGTTGCTGCAGAACG
CGGACGCTCTTCGGGGGACGAAACTCATCCGCGTCGTTCGACTTATCCGA
CTCTTCAAAATATTCAGACTCCTGAAGAGGAGTCTGATCAGCCACAACTA
CCTCCGAGGCTGGTTCATGGTCGACTTCATCTCCACACTACCACTGGATA
TCTTGCTGTCTCAGTTGCTGCAGAACGCGGACGCTCTTCGGGGGACGAAA
CTCATCCGCGTCGTTCGACTTATCCGACTCTTCAAAATATTCAGACTCCT
GAAGATGTCGACGTTTTTCGAGCGGTATGAGGAGAGCATGCCAGTGAATC
CTGCCGTGGTGCGACTGACCAAGTTGATCGTACTCATGTCCTTTGCCGCC
CATCTGGCGGTGAGATACCATGTAGAGTAAATGTCGACGTTTTTCGAGCG
GTATGAGGAGAGCATGCCAGTGAATCCTGCCGTGGTGCGACTGACCAAGT
TGATCGTACTCATGTCCTTTGCCGCCCATCTGGCGGTGAGATACCATGTA
GAGTAA
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