mRNA_H-paniculata_contig3491.9303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: D8LB68_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB68_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.140e-27 Identity = 69/94 (73.40%), Postives = 83/94 (88.30%), Query Frame = 1
Query: 1 RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHLA 282
R LI+ YLR WF+VDF+ST+PLD + S++L N+DALR TKLIR XXXXXXXXXXXX KMSTFFERY+E+M +NPAV+RLTKL++LMSFAAHLA
Sbjct: 1420 RKLIAGEYLRTWFIVDFVSTVPLDTMFSRMLLNSDALRSTKLIRXXXXXXXXXXXXXLKMSTFFERYQEAMQMNPAVIRLTKLVILMSFAAHLA 1513
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: D8LFK4_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK4_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 4.670e-11 Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 1
Query: 22 YLRGWFMVDFISTLPLDILLSQL-LQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH 276
YL+GWF VD IST+P D+L+ Q+ + NA+A T+L+R XXXXXXXXXXXXX + F E +EE+ P+ P+ V+L +L+V+M+F+AH
Sbjct: 935 YLKGWFTVDLISTVPWDLLVLQIAVGNANAATSTRLVRXXXXXXXXXXXXXXXIPDFMEEWEENSPLGPSSVKLGRLLVIMAFSAH 1020
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1W0A984_9STRA (Tetrameric potassium-selective cyclic nucleotide gated channel-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A984_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.220e-10 Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 10 ISHNYLRGWFMVDFISTLPLDILLS----QLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH-LAVRYHV 297
I+ YL+ WF +DF+S+ P + ++ QL+ N+ +L +LIR+XXXXXXXXXXXXXK+ FF+R EE+ +NP VVRLT+LI L+ F AH LA +H+
Sbjct: 177 IAKLYLQTWFFLDFVSSFPFEAAVTLFNPQLITNSHSLSSIQLIRIXXXXXXXXXXXXXKLRLFFKRAEENFGLNPGVVRLTRLIFLVLFLAHVLACFFHL 277
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1V9Y795_9STRA (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y795_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 9.300e-9 Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 10 ISHNYLRGWFMVDFISTLPLDILLSQLLQNAD-ALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH 276
I +YLRGWFM+DF+STLP+D + S + N+ L TK++R+XXXXXXXXXXXXX F+R +S+ ++P+ RL KL+++M H
Sbjct: 736 IIFSYLRGWFMIDFVSTLPIDTIGSYFISNSSQVLASTKILRIXXXXXXXXXXXXXXXGKVFKRLRDSIQLSPSGERLLKLVMIMVLFGH 825
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: T0RE99_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RE99_SAPDV) HSP 1 Score: 61.2 bits (147), Expect = 9.330e-9 Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 10 ISHNYLRGWFMVDFISTLPLDILLS----QLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH-LAVRYH 294
I+ NY R WF++D +ST PL+ + ++ N +L +L+R XXXXXXXXXXXXX + FF+R EE+ VNP VVRL +LI ++ F AH LA +H
Sbjct: 170 IAKNYARTWFLLDLVSTFPLEAAVKLFNPSVVANGHSLASVQLLRXXXXXXXXXXXXXXXLRVFFKRVEETFGVNPGVVRLARLICVVLFLAHVLACMFH 269
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1V9Z891_9STRA (Cyclic nucleotide-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z891_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.280e-8 Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 10 ISHNYLRGWFMVDFISTLPLD----ILLSQLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHL 279
I+ YLR WF++DF+ST PL+ +L LL N D+L +L XXXXXXXXXXXXX + FF+R EE +NP VRL +LI L+ F AHL
Sbjct: 175 IAKLYLRTWFVLDFMSTFPLEGTVRVLFPGLLANTDSLSSIQLXXXXXXXXXXXXXXXXXLRLFFKRVEEVFGLNPGAVRLARLIFLVLFLAHL 268
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A067CSH4_SAPPC (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CSH4_SAPPC) HSP 1 Score: 59.3 bits (142), Expect = 4.190e-8 Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 10 ISHNYLRGWFMVDFISTLPLDILLS----QLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH-LAVRYH 294
I+ +YLR WF++DF+ST PL+ + ++ N+ +L +L+R XXXXXXXXXXXXX + FF+R EE+ NP VRL +LI ++ F AH LA +H
Sbjct: 170 IAKSYLRTWFLLDFVSTFPLEAAVKLFNPSVVANSHSLASVQLLRXXXXXXXXXXXXXXXLRVFFKRVEETFGFNPGGVRLARLIFVVLFLAHVLACMFH 269
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A7S0RXU4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RXU4_9CHLO) HSP 1 Score: 58.2 bits (139), Expect = 6.460e-8 Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1
Query: 1 RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHL 279
R LIS NY+RGWF VDFIST+PLD++ L N L ++ XXXXXXXXXXXXX F E+ + VN +++RL +L+ + +AHL
Sbjct: 80 RRLISRNYIRGWFGVDFISTVPLDLMGEALDSNVGLLSSMRVFXXXXXXXXXXXXXXXXXXXXFRNLEDVLHVNQSMLRLVRLLFNLCLSAHL 172
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A1V9YN52_9STRA (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN52_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.540e-7 Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 1 RSLISHN------YLRGWFMVDFISTLPLDILLSQLLQ---NADALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAH 276
R L+ H+ YLRGWF++DF+ST+P+D + S L + L TK++RV XXXXXXXXXXXX F+R+ +S+ ++P+ RL KL+++M H
Sbjct: 718 RQLVVHSKTIMLTYLRGWFLIDFVSTVPIDTIGSIFLHVGNSRQVLASTKILRVFXXXXXXXXXXXXXXGKVFKRFRDSIQLSPSSERLLKLVMIMVLFGH 818
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Match: A0A024TQP4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQP4_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.870e-7 Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 1 RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNA--DALRGTKLIRVXXXXXXXXXXXXXKMSTFFERYEESMPVNPAVVRLTKLIVLMSFAAHL 279
++ I+ +YLRGWF+VDF ST+PL+ ++ + + +AL+ K+ R XXXXXXXX K+ ++EE + N +V+ L K+++ + F AHL
Sbjct: 167 KTQIAQSYLRGWFLVDFASTMPLESIVKLIYPDTPTNALQTAKIFRGLKLVXXXXXXXXRKIGNMISKFEEEVFANQSVLSLVKILLFLLFLAHL 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3491.9303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3491.9303.1 >prot_H-paniculata_contig3491.9303.1 ID=prot_H-paniculata_contig3491.9303.1|Name=mRNA_H-paniculata_contig3491.9303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp RSLISHNYLRGWFMVDFISTLPLDILLSQLLQNADALRGTKLIRVVRLIRback to top mRNA from alignment at H-paniculata_contig3491:16481..17142+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3491.9303.1 ID=mRNA_H-paniculata_contig3491.9303.1|Name=mRNA_H-paniculata_contig3491.9303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=662bp|location=Sequence derived from alignment at H-paniculata_contig3491:16481..17142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3491:16481..17142+ >mRNA_H-paniculata_contig3491.9303.1 ID=mRNA_H-paniculata_contig3491.9303.1|Name=mRNA_H-paniculata_contig3491.9303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig3491:16481..17142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |