mRNA_H-paniculata_contig34887.9297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34887.9297.1
Unique NamemRNA_H-paniculata_contig34887.9297.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34887.9297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34887contigH-paniculata_contig34887:1131..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34887.9297.1prot_H-paniculata_contig34887.9297.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34887 1339..1737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930077.382552-UTR-H-paniculata_contig34887:1130..13381622930077.382552-UTR-H-paniculata_contig34887:1130..1338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34887 1131..1338 +
1691481137.3977058-UTR-H-paniculata_contig34887:1130..13381691481137.3977058-UTR-H-paniculata_contig34887:1130..1338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34887 1131..1338 +
1622930077.4095538-UTR-H-paniculata_contig34887:1737..18541622930077.4095538-UTR-H-paniculata_contig34887:1737..1854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34887 1738..1854 +
1691481137.4199097-UTR-H-paniculata_contig34887:1737..18541691481137.4199097-UTR-H-paniculata_contig34887:1737..1854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34887 1738..1854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930077.3971083-CDS-H-paniculata_contig34887:1338..17371622930077.3971083-CDS-H-paniculata_contig34887:1338..1737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34887 1339..1737 +
1691481137.4109359-CDS-H-paniculata_contig34887:1338..17371691481137.4109359-CDS-H-paniculata_contig34887:1338..1737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34887 1339..1737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34887.9297.1

>prot_H-paniculata_contig34887.9297.1 ID=prot_H-paniculata_contig34887.9297.1|Name=mRNA_H-paniculata_contig34887.9297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MDHVTGEQHCAVSVMTRRTTNGMQQVVSRKRWDVSSTPEKRQTLAFIPPL
RSPTACVLCLVHEVVPTASRMSLPSMGDRYWSILQRAAAKSSRTTTAVKQ
EKNRNESCPPSVCTSSVHSHLHRPLLTTGSFR*
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mRNA from alignment at H-paniculata_contig34887:1131..1854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34887.9297.1 ID=mRNA_H-paniculata_contig34887.9297.1|Name=mRNA_H-paniculata_contig34887.9297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=724bp|location=Sequence derived from alignment at H-paniculata_contig34887:1131..1854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCTGTAGTAGTTTTTATTGACGGTATGCCCATCTCCGCAAAATTTTA
TGTCTATCCTCCAAAATGTGGCAGGAGAAAAGGCGGTTGGGCTCTCTTTT
GCCGGTCTAAATAAATGGTCCCAGCCTTTTAGTTCAAGTGGGATGGCCTC
GTAAAACCACATCATCATCGTCATCATCAACAACATAACCATAGTATGGG
CTCGATGAATGGACCATGTCACGGGGGAACAGCATTGTGCAGTCAGTGTG
ATGACTCGCCGAACAACGAACGGCATGCAGCAAGTAGTATCACGAAAGCG
GTGGGATGTCAGCTCCACTCCTGAAAAACGGCAAACCCTTGCGTTCATCC
CCCCTCTACGTTCTCCCACCGCCTGTGTACTCTGCCTTGTACATGAAGTC
GTACCTACAGCCAGTCGCATGAGCTTACCAAGCATGGGAGATAGATACTG
GAGCATACTACAGCGGGCTGCAGCAAAAAGTAGCCGAACAACGACAGCTG
TAAAACAAGAGAAAAACCGCAACGAGAGCTGCCCGCCGTCTGTCTGCACA
AGCTCTGTACACTCTCACCTACATAGACCACTGTTAACAACAGGCTCGTT
TCGTTAACCTGTATTTACTCAAGTCTATTCTAACTGTGCCGAGAACACAA
CTAACTAACTCCCCAACGGATGTCCCGGTTTGTTTCCACCCGATAAGATC
CAAGCCCAGAGACAGTCCCCCTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig34887:1131..1854+

>mRNA_H-paniculata_contig34887.9297.1 ID=mRNA_H-paniculata_contig34887.9297.1|Name=mRNA_H-paniculata_contig34887.9297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig34887:1131..1854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCATGTCACGGGGGAACAGCATTGTGCAGTCAGTGTGATGACTCG
CCGAACAACGAACGGCATGCAGCAAGTAGTATCACGAAAGCGGTGGGATG
TCAGCTCCACTCCTGAAAAACGGCAAACCCTTGCGTTCATCCCCCCTCTA
CGTTCTCCCACCGCCTGTGTACTCTGCCTTGTACATGAAGTCGTACCTAC
AGCCAGTCGCATGAGCTTACCAAGCATGGGAGATAGATACTGGAGCATAC
TACAGCGGGCTGCAGCAAAAAGTAGCCGAACAACGACAGCTGTAAAACAA
GAGAAAAACCGCAACGAGAGCTGCCCGCCGTCTGTCTGCACAAGCTCTGT
ACACTCTCACCTACATAGACCACTGTTAACAACAGGCTCGTTTCGTTAAA
TGGACCATGTCACGGGGGAACAGCATTGTGCAGTCAGTGTGATGACTCGC
CGAACAACGAACGGCATGCAGCAAGTAGTATCACGAAAGCGGTGGGATGT
CAGCTCCACTCCTGAAAAACGGCAAACCCTTGCGTTCATCCCCCCTCTAC
GTTCTCCCACCGCCTGTGTACTCTGCCTTGTACATGAAGTCGTACCTACA
GCCAGTCGCATGAGCTTACCAAGCATGGGAGATAGATACTGGAGCATACT
ACAGCGGGCTGCAGCAAAAAGTAGCCGAACAACGACAGCTGTAAAACAAG
AGAAAAACCGCAACGAGAGCTGCCCGCCGTCTGTCTGCACAAGCTCTGTA
CACTCTCACCTACATAGACCACTGTTAACAACAGGCTCGTTTCGTTAA
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