mRNA_H-paniculata_contig3485.9293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3485.9293.1
Unique NamemRNA_H-paniculata_contig3485.9293.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A6H5KCH1_9PHAE (Mitochondrial inner membrane protease ATP23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH1_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.220e-65
Identity = 100/181 (55.25%), Postives = 131/181 (72.38%), Query Frame = 2 
Query:  188 KCLGQAHDSLDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPA-PEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDRAREFVETAFESCYHDTEPYDKNP 727
            +C      SL RC KV F+REK+ +LGC +P   F CRPC + + +SGG+ P  K  DG P+  E+VLC DK + Q  ++HT+AHELIHA+DQCR+K++  NCLH AC+E+RASNTSGEC    E +RG+ KW   Q+ CVKRRAELS+K  P C+D+A E+V +AF+ CY+DTEPYDKNP
Sbjct:   29 RCEEMVQYSLQRCPKVKFIREKLEKLGCEMPTGMFTCRPC-EGMDISGGFIPPTKGADGKPSRAEVVLCSDKGVNQTMMDHTMAHELIHAYDQCRVKLDRTNCLHVACTEIRASNTSGECSFDMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDKAAEYVNSAFKPCYYDTEPYDKNP 208
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A835Z5N3_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.900e-48
Identity = 84/186 (45.16%), Postives = 116/186 (62.37%), Query Frame = 2 
Query:  188 KCLGQAHDSLDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWN----PGMKDRDGNPAPEIVLCEDKEMT--QKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDRAREFVETAFESCYHDTEPYDKNP 727
            +CL     +L    +V FL+  + ++GC LP E+  CR C  D S++GG+      G   + G P P I+LCE+ ++   Q+ V+ TLAHEL+HAFD CR+K ++ NCLHHAC+E+RASN SGEC    EW RGN      Q+ CVKRRA LSL  NP C  + ++F++ A+  C  D EP+D NP
Sbjct:   13 RCLAAKDKALRYSPRVTFLKAAIEKMGCKLPDESIECRRC--DESMTGGFTLNAEAGASQQGGKPQPTIILCEEVQIMRQQRVVDSTLAHELVHAFDACRVKADFTNCLHHACTEIRASNLSGECAWKMEWDRGNVAITRQQEKCVKRRAALSLAANPSCKGQEQQFIDAAWPFCSRDDEPFDANP 196
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: W7TN46_9STRA (Mitochondrial inner membrane protease ATP23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN46_9STRA)

HSP 1 Score: 163 bits (413), Expect = 8.800e-44
Identity = 78/162 (48.15%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  254 MAELGCYLPRETFV-CRPCGDDLSVSGGW---NPGMKDRDGNPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDRAREFVETAFESCYHDTEPYDKNP 727
            +++LGC +  +T V CR C  +++ +GG+   + G+K+  G   P IV+CED  +    V  TLAHEL+HA+DQCR K+NW +C H+AC+E+RAS  SGECD ++E+ RGNF      Q CV+RRAELS+++   C DRA+E +E  F+ CY DT PYDK P
Sbjct:   69 ISDLGCTIDIDTMVECRQC--NIAATGGFIANHQGLKE--GEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDRAKEVIEKVFKRCYQDTAPYDKIP 226
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A1Y2HU47_9FUNG (Mitochondrial inner membrane protease ATP23 n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HU47_9FUNG)

HSP 1 Score: 156 bits (394), Expect = 7.720e-41
Identity = 77/182 (42.31%), Postives = 110/182 (60.44%), Query Frame = 2 
Query:  182 FRKCLGQAHDSLDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCT--DRAREFVETAFESCYHDTEPYDK 721
            F+ C     D L     + FL + +   GC   R  F+C+PC  D + SGG++P            +VLCE++  ++  +  T+AHE+IHA D CR K++WDNCLHHAC+E+RA+N SG+C    EW RGN   +  QQ+CV+RRA LSL+ NPKC+    A E V   + SC++DT P+D+
Sbjct:   68 FQTCEKWKADLLRHSPLIRFLSQHLEASGCAFSRRHFICQPC--DPTRSGGFSPEHG---------VVLCENRLYSKSHLEETMAHEMIHALDHCRAKLDWDNCLHHACTEIRAANLSGDCRWSNEWMRGNMAISKQQQACVRRRAILSLRSNPKCSAPGAAEEAVAEVWNSCFNDTWPFDE 238
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A0L0RXI0_ALLM3 (Mitochondrial inner membrane protease ATP23 n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RXI0_ALLM3)

HSP 1 Score: 154 bits (389), Expect = 4.080e-40
Identity = 78/182 (42.86%), Postives = 111/182 (60.99%), Query Frame = 2 
Query:  182 FRKCLGQAHDSLDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDR--AREFVETAFESCYHDTEPYDK 721
            +R C    +  +     V FL + +   GC   R+ F+C+PC  D + SGG++P            +VLCE++ +++  V  T+AHELIHA D CR K++WDNCLHHAC+E+RA++ SG+C +  EW RGNF  +   Q+CVKRRA LSL+ NPKC     A E V   + SC+ DT P+D+
Sbjct:   68 YRTCEKWKNHMIRHSPIVKFLMQHLEAAGCGFSRKHFICQPC--DPTRSGGFSPEYG---------VVLCENQLVSKAHVEDTMAHELIHALDHCRAKLDWDNCLHHACTEIRAASLSGDCRLANEWLRGNFGISKQHQACVKRRAILSLQSNPKCAGPGVAEEAVAEVWASCFADTWPFDE 238
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A7S3BYE0_9VIRI (Mitochondrial inner membrane protease ATP23 n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BYE0_9VIRI)

HSP 1 Score: 150 bits (379), Expect = 2.050e-39
Identity = 79/183 (43.17%), Postives = 107/183 (58.47%), Query Frame = 2 
Query:  188 KCLGQAHDSLDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIK-MNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTD--RAREFVETAFESCYHDTEPYDKNP 727
            +C      S  R   V F+ +KM E GC +P+    C  CG    V+GG+ P            +VLC +   +Q  V+  L HEL+HA+DQCR+K ++W +C HHACSE+RA+N SG+C M +E  RGN   + GQQ+CVKRRA LS+ +NP C     AR  VE  FE C+ DT P+D+ P
Sbjct:    9 ECERMVEHSRTRSPFVRFMLQKMEEAGCAVPKSFISCETCGS-AEVNGGFRPDEG---------VVLCAEHMHSQADVDAVLTHELVHAYDQCRVKNIDWCDCNHHACSEIRAANLSGDCWMSREVARGNLTLSKGQQACVKRRAALSVAMNPNCGGPANARAAVERQFEQCFADTAPFDRVP 181
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A7S2W3M8_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W3M8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.220e-39
Identity = 71/180 (39.44%), Postives = 111/180 (61.67%), Query Frame = 2 
Query:  218 DRCGKVI----------FLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPAPEIVLCEDK----EMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDRAREFVETAFESCYHDTEPY 715
            DRC K++           L ++M + GC +PR+ F C+PC D+  ++   +      D +   ++V+C D     ++ QK ++ TLAHELIHA+D CR  ++W NCLH AC+EVRA+N SG+C   +E+ RG FK+    + C++RRAELS+ ++P CT+ A++ VET F  C+ D  P+
Sbjct:   17 DRCQKLVDASLENIKVKHLVDEMEKAGCEVPRQFFACKPCQDEGIIAAFAS------DVDQGQQVVICSDNIEKFKIGQKHIDRTLAHELIHAYDDCRANLDWKNCLHIACTEVRAANLSGDCYFKEEFNRGQFKFKGQGEKCIRRRAELSVGMHPHCTNIAKQAVETVFTKCFEDRSPF 190
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: D8Q7D1_SCHCM (Mitochondrial inner membrane protease ATP23 n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8Q7D1_SCHCM)

HSP 1 Score: 149 bits (375), Expect = 3.310e-38
Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 2 
Query:  182 FRKCLGQAHDSLDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDR--AREFVETAFESCYHDTEPYDK 721
             ++C  + +  +     V+F+ +++   GC LP   FVC PC D +  +GG+ PG+          IVLC     ++    HT+ HE+IH FD+CR K++W N  HHAC+E+RA++ SG+C  +QE +RGNF +    Q+CV+ RA +S+  N  C D   AR  V   F+SC+ DT P+D+
Sbjct:   58 LKRCEDRKYHLMQSSPGVVFMLKQLKLAGCELPENNFVCAPC-DSVDRAGGYKPGVG--------AIVLCAGHIYSKDHQEHTMMHEMIHLFDECRFKLDWSNLRHHACTEIRANSLSGDCRYLQEMQRGNFSFTKNHQTCVRERAIISVSKNKSCPDMETARRAVNEVFDSCFADTRPFDE 230
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BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A8K1CCD8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCD8_PYTOL)

HSP 1 Score: 147 bits (370), Expect = 6.580e-38
Identity = 77/199 (38.69%), Postives = 114/199 (57.29%), Query Frame = 2 
Query:  131 LLQLPEKSLPSDGPSPAFRKCLGQAHDSLDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDRAREFVETAFESCYHDTEPYDKNP 727
            L+  P+ +  SD     ++        SL +C +V FL E M ++GC +P   F    C  +  ++GG++    D D  P   +VLC++    Q+ ++ T+AHELIHAFD CR K++W +C HHACSEVRA+  SG+CD   E+ R NF  A   Q C +RRA+LS+  N +C  +  E ++  F+SCY D  PY + P
Sbjct:    7 LMGGPKANTASDPKEAQYQHSGEMLETSLSKCSRVSFLVEMMEKMGCKMPAGFFSIVEC--EGQINGGFH---LDEDNKPG--VVLCQNHIADQEWMDRTVAHELIHAFDHCRAKLDWKSCEHHACSEVRAAALSGDCDWKNEFFRKNFNIAKQHQICTRRRAKLSITNNEECKGKEDECLDKIFDSCYRDVAPYREIP 198
[Close]
BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Match: A0A8H7PCQ1_MORIS (Mitochondrial inner membrane protease ATP23 (Fragment) n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PCQ1_MORIS)

HSP 1 Score: 148 bits (373), Expect = 8.240e-38
Identity = 72/165 (43.64%), Postives = 106/165 (64.24%), Query Frame = 2 
Query:  233 VIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDGNPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSEVRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDR--AREFVETAFESCYHDTEPYDK 721
            V F+ E + ++GC + +E F C PC  D + SGG++P    +DG     I+LC+++  ++K    T+ HE+IH FD CR K++W NC HHACSE+RA++ SG+C   +E +RG + +    Q+CVKRRA LS++ NP C D   A   V + FESC+ DT PYD+
Sbjct:   86 VRFMLENLQKVGCAMKKEDFKCMPC--DETRSGGFSP----QDG-----ILLCQNRFFSKKHQEDTMVHEMIHMFDNCRFKVDWSNCKHHACSEIRAASLSGDCRWTREVRRGFYTFTKQHQACVKRRAILSVRQNPACADEGCAERAVHSVFESCFADTRPYDE 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3485.9293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCH1_9PHAE2.220e-6555.25Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A835Z5N3_9STRA2.900e-4845.16Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
W7TN46_9STRA8.800e-4448.15Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A1Y2HU47_9FUNG7.720e-4142.31Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A0L0RXI0_ALLM34.080e-4042.86Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A7S3BYE0_9VIRI2.050e-3943.17Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A7S2W3M8_9STRA4.220e-3939.44Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
D8Q7D1_SCHCM3.310e-3837.91Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A8K1CCD8_PYTOL6.580e-3838.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8H7PCQ1_MORIS8.240e-3843.64Mitochondrial inner membrane protease ATP23 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3485contigH-paniculata_contig3485:6833..10902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue1.4e-55
Seed eggNOG ortholog2880.D8LT69
KEGG koko:K12492,ko:K18156
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsKOG3314@1,KOG3314@2759
Ec32 ortholog descriptionPeptidase M76, ATP23
Ec32 orthologEc-12_005480.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Exons5
Model size1486
Cds size672
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.7256963-UTR-H-paniculata_contig3485:6832..68961622930076.7256963-UTR-H-paniculata_contig3485:6832..6896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3485 6833..6896 +
1691481137.1220226-UTR-H-paniculata_contig3485:6832..68961691481137.1220226-UTR-H-paniculata_contig3485:6832..6896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3485 6833..6896 +
1622930076.8438594-UTR-H-paniculata_contig3485:10152..109021622930076.8438594-UTR-H-paniculata_contig3485:10152..10902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3485 10153..10902 +
1691481137.2033527-UTR-H-paniculata_contig3485:10152..109021691481137.2033527-UTR-H-paniculata_contig3485:10152..10902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3485 10153..10902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.7675571-CDS-H-paniculata_contig3485:6896..70561622930076.7675571-CDS-H-paniculata_contig3485:6896..7056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 6897..7056 +
1691481137.1392555-CDS-H-paniculata_contig3485:6896..70561691481137.1392555-CDS-H-paniculata_contig3485:6896..7056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 6897..7056 +
1622930076.7836988-CDS-H-paniculata_contig3485:8536..86911622930076.7836988-CDS-H-paniculata_contig3485:8536..8691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 8537..8691 +
1691481137.155873-CDS-H-paniculata_contig3485:8536..86911691481137.155873-CDS-H-paniculata_contig3485:8536..8691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 8537..8691 +
1622930076.7986803-CDS-H-paniculata_contig3485:9015..91501622930076.7986803-CDS-H-paniculata_contig3485:9015..9150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 9016..9150 +
1691481137.17303-CDS-H-paniculata_contig3485:9015..91501691481137.17303-CDS-H-paniculata_contig3485:9015..9150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 9016..9150 +
1622930076.8133254-CDS-H-paniculata_contig3485:9364..95081622930076.8133254-CDS-H-paniculata_contig3485:9364..9508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 9365..9508 +
1691481137.1824179-CDS-H-paniculata_contig3485:9364..95081691481137.1824179-CDS-H-paniculata_contig3485:9364..9508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 9365..9508 +
1622930076.826657-CDS-H-paniculata_contig3485:10074..101521622930076.826657-CDS-H-paniculata_contig3485:10074..10152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 10075..10152 +
1691481137.1924324-CDS-H-paniculata_contig3485:10074..101521691481137.1924324-CDS-H-paniculata_contig3485:10074..10152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3485 10075..10152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3485.9293.1prot_H-paniculata_contig3485.9293.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3485 6897..10152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3485.9293.1

>prot_H-paniculata_contig3485.9293.1 ID=prot_H-paniculata_contig3485.9293.1|Name=mRNA_H-paniculata_contig3485.9293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MARELIDNDTADAESGNTGETPLLQLPEKSLPSDGPSPAFRKCLGQAHDS
LDRCGKVIFLREKMAELGCYLPRETFVCRPCGDDLSVSGGWNPGMKDRDG
NPAPEIVLCEDKEMTQKTVNHTLAHELIHAFDQCRIKMNWDNCLHHACSE
VRASNTSGECDMMQEWKRGNFKWANGQQSCVKRRAELSLKLNPKCTDRAR
EFVETAFESCYHDTEPYDKNPWY*
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mRNA from alignment at H-paniculata_contig3485:6833..10902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3485.9293.1 ID=mRNA_H-paniculata_contig3485.9293.1|Name=mRNA_H-paniculata_contig3485.9293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4070bp|location=Sequence derived from alignment at H-paniculata_contig3485:6833..10902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGTCCCTCGCTCTAGTTGCCTGGATGTGAAAACCGCTGCACCAACAA
CAACGTACGTTGCCATGGCGCGTGAGCTCATCGACAATGACACGGCTGAT
GCTGAGAGTGGCAATACTGGTGAAACGCCATTACTGCAGCTACCGGAAAA
ATCTTTGCCGTCGGACGGACCCAGTCCAGCTTTTAGGAAATGCCTGGGCC
AGGCGCACGACAGTTTAGACCGCTGTGAGTGCAAAACCCTGGGATAACCT
ATCGTCCAAACTCATCAAAGCTGATGGAAATGTTCAGTAGAGTTCAGTTA
GAGCAGTCGTGTTGAGGTTAGAATGCCGAGCATCAGTTTCATCTGCGTTT
TCGTCGTTGCCGCTGTCTACATATCTTCACTATGTTTGACTGTCTCTGAT
AATGGACAAATAGATACGATTCAAACAGGCACTTATAATAAACAGTAGCG
ACATACCACAAACAGTATGTACCGTACCCACTGTTTCGGAAAGATGCGGT
GGATGAGTTGACACCCACTATGGAGGGAAATGGATACGTGGGGGAGGGTT
CCTTATCGTATACAGCACAGCACAACCACTTGCGAATAATGGCTGTGCTG
CAGGTGTCGGGCTCAAAACGCCTTTGCCGGAATATGGCTTACCCCGTTTT
TACTGCGAGGATATTGTGGGAGCAATGACGCGATCTCTTGGCGCAAGTAC
TTCTCTGTTTCACATACATTTACCATACTCGATTACGTAAAGATTGATGA
CTACTATAGCTAACCCTTTTGACACCTGGGTGCCTGCATTGCGGTAAATA
CATAAATACTGGTCCTAAGCGAGGTTTATCTCCAGTGGGACTGTCGGTAT
TACGCCTCCCTGTTTTGCTGCATCGTATTTCGTTTTGGTCTTCGTATTGT
GCAGACCGTACACGCCGCACTGTGTTGCAATTTGTAATTTGCAGCACGTG
AGGATGTCCACAGTGGTGGAACAGGAGCTGTGTCGTCAACAGGCATCCCT
CCTGCCATGCGCCAACCTATCGCGTCATATGCGGCAGCCACTCTCTTTGT
ATGCGTCGTGAAAATTGTACTACACACCCACAACAACCCAGACGCAAACG
CACGCTGTGCGCTGTGCATGGTGTGGCGTGATGTCCATCAGGACCGCCGA
TCGCTGATTCGTATTTTGGTGCTACATGCCGACAAGGCCCAAATCGACAA
TCCACCGAGGCGCCGAAGTTATTTTCAGCTCTGCTGTCCATTCATCGTCT
TCTTGATGTTTGCTGCACATACGGTTAGTCCATGCGCTTGCCCGACCGTT
GTGCCAGTTCTTGTCCCAGCGTTTATGGTTTGCGAAGCGTGCTTGCTACA
AGCAGGACTCAATGTCGAGGTAAGATACTCTGCACTCGATCCAGTTTGTA
GCGTTAGCGAAGACTAGCTCCAGGAACTGTCCTCCAGAAGAAATGGTTTC
CTACCTCGTAAGATTGCTGATGCCTACGACAGCGAGTCCGACAAATATCC
AGCAATCGCGACTTCCCATTTGATTCGGATCGTGGTAACTCCAATTTATG
CAGCTAAGTTACAAAATTAGCAGCACTTACAAACACAAGACAACCACGTT
ATACAGAACCATGGCATGTCTGAAATGTAACCTCTCCTCTGCCCGAACAA
TGCCGACTGCACACGACCTCCGCCCTACCGCACACGCACGCAACGAATGC
AAAGGCGGAAAGGTCATATTCTTGAGAGAGAAAATGGCGGAACTGGGGTG
CTACTTGCCTCGAGAAACATTTGTCTGCCGACCATGCGGAGATGACCTTA
GCGTATCGGGTGGTTGGAATCCAGGGATGAAGGACCGAGATGGCAACCCT
GCCCCGGAGGTACGTGCCGTTTGTGTTGTCCAGAGACCTTAGATCATTCA
CAACATATGTTTTTTATGATGTGCGAGGTATCTTGTTGTGCCGCTTATGC
TCATACAGTACATGCAACTATAGTTCTAGAGCTAGTGTCTATCCCTTCCC
GTTATCTCGTTGATTCTCTCCATTACACCTCTATGTAATCGTGCTTGCTC
TGCGGGAAAATGACGAGTACTCATTACACCAGTACTCCCCCCCCGCCCCT
AATACCCCTGCTCCGTCCGCTCTCGGTCATTTGGTTTCACGGGTATCTCT
TACTCTCACGCGCATGGCACGAGACCACCGCAGATAGTGCTGTGCGAGGA
TAAAGAAATGACACAGAAGACGGTGAACCACACATTGGCTCATGAGCTTA
TCCACGCGTTTGACCAGTGCAGGATCAAGATGAACTGGGACAACTGCTTG
CACCACGCATGCAGCGAGGTAGGACGCACATGCCTGCTTCTGATGTGATT
GTTGTGCCCACGCAGACCGATCACAACTAGCTTCAAGGACTTCCTGCCGC
CCTTATCATCAGCTGAACAGGCACACGAAATGTCAGAGTGTCCCCCCCCC
CCCCCCCCCATCGTTCTTGACCTACTCCACCTCCGACCCCGACTAAACGC
AACCGGACCGACTCTATCCTGATTCTCCTAAGGTTCGAGCCTCGAACACA
AGCGGGGAGTGCGACATGATGCAGGAGTGGAAGCGGGGAAACTTCAAGTG
GGCAAACGGCCAGCAGTCTTGCGTAAAGCGAAGAGCGGAGCTTTCGCTCA
AGCTAAACCCCAAATGCACAGACCGGGTGAGTTGTCACTTCAGGAAGGGG
GCAGAAGCACTTGCGGAATATGGGGGGCTGTGAGCGCTAGACGAACAAAG
CGGAATGTGCGAAGCTTCATGGTGGCGTCCCTGGAATCGATGCTAGAAAA
GTAGCTGCTGATGCAGCACCAAGTATAGTACCCTTAAAATATTGGAGAAA
AGAGGGGCTGACCACTGATACACTAGACTGCGTACTAGCGTCGTGTTTGT
TGGACGCCCCGCCTGGAATTGCTCTGTCTGTCTGACTCTCTCTGGCGGCA
ATATTGTTGTCCGCCAACGCAACTATCTCCTGCGAGCTCATACGGGAACA
ACTAGCATTTCGGTCGTTGGTGCACATGTATAGCGGCGAGAATGTGTTAG
GTCGATACCCCACAGATACCGCAGGTGCTATTTTATGGTTGTTGTCTTTG
TTTTTGATTTTTTCCGCGGGTGTTTTTTTTAAGTATACGCTCACCTTGCC
AGTAAAGCGCTTAATCCCCGAACTTGCCTACGTAACCACCCACCCACCTA
CCCACCTGCCCTTCCGTTCGCTAACGCTACTGGTTCTATCAGGCACGAGA
ATTTGTGGAAACTGCGTTCGAGTCGTGCTACCATGATACGGAGCCGTATG
ATAAAAATCCGTGGTACTAAATGGCCAGAAGCTGCCAAGAGCATGGCGGC
AATTTTGGGCACTTTTATCATCGTGTTCATCACAGTTGGGAAAATATTTC
AAAGGGGGGGGCAGGGCGGCGGGGAAGGACCGCCGTGCGACGTGGCGATA
CAATTCTGCTGCTTCGATTTTTTCGTGGTAGTGTTGGAAGCTATATTCGC
ACGTGCAAGAGCATCATCGTCAGTTGTCGGGTAATTGGCAACGTATTCCG
CATTTTCCTGGTGTAGTCTATGCAGGATAAGTGTGAACGTGTGTAACGCA
ATGTGTATCGAACGCTGGGTGATGCCGCACCGACGAGAGTTTGGACGTTG
GTCCCGATGTGCTCTACCTGGAAATCGTTCCCCCCCATCGCCCTTAACAC
CTGACAGTACCTCTTAAATAGACTCTGCTACACCCTCTCGAGCATGTCTG
TATCGTACGCGTGGAACATTCTTGTAACCCCCTCTACAAGTTCAACAATG
GTGCCGTAACGCTCCGCCCAAACCCTACTCTTCAGAGATGCAAAAAAAAC
TTAGATCATTGATGTTGAAATCTGGTGACTGCTCTGGGTGCGTCACGAGC
TTTGGGGGTTTTGCGCATACTGTATGCGAGTAGGTAGGCTCTACATTCCT
TTTGCCGTCGATGCGGAGGGCTGTTGAGTTGTGCTCGGGGTGCGCCTAGC
GGTGGAGTTGTGAGTGTGTTTAGCGGTTCCACACTGCAGCAGGATCATCC
AAAAATAAGAATATGCCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3485:6833..10902+

>mRNA_H-paniculata_contig3485.9293.1 ID=mRNA_H-paniculata_contig3485.9293.1|Name=mRNA_H-paniculata_contig3485.9293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig3485:6833..10902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGTGAGCTCATCGACAATGACACGGCTGATGCTGAGAGTGGCAA
TACTGGTGAAACGCCATTACTGCAGCTACCGGAAAAATCTTTGCCGTCGG
ACGGACCCAGTCCAGCTTTTAGGAAATGCCTGGGCCAGGCGCACGACAGT
TTAGACCGCTATGGCGCGTGAGCTCATCGACAATGACACGGCTGATGCTG
AGAGTGGCAATACTGGTGAAACGCCATTACTGCAGCTACCGGAAAAATCT
TTGCCGTCGGACGGACCCAGTCCAGCTTTTAGGAAATGCCTGGGCCAGGC
GCACGACAGTTTAGACCGCTGCGGAAAGGTCATATTCTTGAGAGAGAAAA
TGGCGGAACTGGGGTGCTACTTGCCTCGAGAAACATTTGTCTGCCGACCA
TGCGGAGATGACCTTAGCGTATCGGGTGGTTGGAATCCAGGGATGAAGGA
CCGAGATGGCAACCCTGCCCCGGAGGCGGAAAGGTCATATTCTTGAGAGA
GAAAATGGCGGAACTGGGGTGCTACTTGCCTCGAGAAACATTTGTCTGCC
GACCATGCGGAGATGACCTTAGCGTATCGGGTGGTTGGAATCCAGGGATG
AAGGACCGAGATGGCAACCCTGCCCCGGAGATAGTGCTGTGCGAGGATAA
AGAAATGACACAGAAGACGGTGAACCACACATTGGCTCATGAGCTTATCC
ACGCGTTTGACCAGTGCAGGATCAAGATGAACTGGGACAACTGCTTGCAC
CACGCATGCAGCGAGATAGTGCTGTGCGAGGATAAAGAAATGACACAGAA
GACGGTGAACCACACATTGGCTCATGAGCTTATCCACGCGTTTGACCAGT
GCAGGATCAAGATGAACTGGGACAACTGCTTGCACCACGCATGCAGCGAG
GTTCGAGCCTCGAACACAAGCGGGGAGTGCGACATGATGCAGGAGTGGAA
GCGGGGAAACTTCAAGTGGGCAAACGGCCAGCAGTCTTGCGTAAAGCGAA
GAGCGGAGCTTTCGCTCAAGCTAAACCCCAAATGCACAGACCGGGTTCGA
GCCTCGAACACAAGCGGGGAGTGCGACATGATGCAGGAGTGGAAGCGGGG
AAACTTCAAGTGGGCAAACGGCCAGCAGTCTTGCGTAAAGCGAAGAGCGG
AGCTTTCGCTCAAGCTAAACCCCAAATGCACAGACCGGGCACGAGAATTT
GTGGAAACTGCGTTCGAGTCGTGCTACCATGATACGGAGCCGTATGATAA
AAATCCGTGGTACTAAGCACGAGAATTTGTGGAAACTGCGTTCGAGTCGT
GCTACCATGATACGGAGCCGTATGATAAAAATCCGTGGTACTAA
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