mRNA_H-paniculata_contig34834.9290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34834.9290.1
Unique NamemRNA_H-paniculata_contig34834.9290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34834.9290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34834contigH-paniculata_contig34834:1105..2382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size583
Cds size582
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.462091-CDS-H-paniculata_contig34834:1104..14361622930076.462091-CDS-H-paniculata_contig34834:1104..1436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34834 1105..1436 -
1691481137.0095992-CDS-H-paniculata_contig34834:1104..14361691481137.0095992-CDS-H-paniculata_contig34834:1104..1436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34834 1105..1436 -
1622930076.4777224-CDS-H-paniculata_contig34834:2132..23821622930076.4777224-CDS-H-paniculata_contig34834:2132..2382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34834 2133..2382 -
1691481137.022304-CDS-H-paniculata_contig34834:2132..23821691481137.022304-CDS-H-paniculata_contig34834:2132..2382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34834 2133..2382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34834.9290.1prot_H-paniculata_contig34834.9290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34834 1105..2382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34834.9290.1

>prot_H-paniculata_contig34834.9290.1 ID=prot_H-paniculata_contig34834.9290.1|Name=mRNA_H-paniculata_contig34834.9290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
TKISTADVLQEGFDMQQQVLHPPGTKVMLAFLNIASCPSIITYGSTLTPV
LKKALIFLSNNLDEKGTIALALPDMLCDSSHLRALLKEAGLIMESVPFVS
HYGNGHAGRKKKKQKLMLPNQGSIILTAHKGDVLICNGGTGSRSTPSAAR
ASRRNAVGSPADTAFNAGAVVSQQRPPKGTYITQNAAEFLIRR*
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mRNA from alignment at H-paniculata_contig34834:1105..2382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34834.9290.1 ID=mRNA_H-paniculata_contig34834.9290.1|Name=mRNA_H-paniculata_contig34834.9290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig34834:1105..2382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAAGATATCCACCGCGGATGTACTTCAAGAGGGGTTCGACATGCAGCA
ACAGGTACTGCATCCGCCGGGCACAAAGGTCATGCTGGCGTTCTTGAACA
TCGCGAGCTGTCCTTCAATCATCACCTACGGCTCCACTCTGACCCCAGTC
CTGAAGAAGGCCTTGATCTTTCTCTCGAACAACTTGGACGAGAAGGGCAC
CATCGCCCTGGCTCTTCCTGACATGTTGTGTGACAGCTCACATCTGAGAG
GTAAGTTTGGCGTGATAATGGCGAATCCTTGTACTCATGTTTTTTTTACA
TTAAAGTCTTGGTCTTTTTTTTTGGACTGTATAACGGGTCTCATCGTCTA
CTTCGAGTAAAATGCAGTGTACTATAATAATACGTTGATCGGGATTGAGA
CTCTGTGTGCGTTGGCGTGGCGGCTCCTCAAATAACTTCATTAAGCCGTG
TGCCTTGATGTTGAGTGTGGTGTGTGTACAGCAGCCTCCCCCCTCCCCAC
TTTTGTGTTCTATTTTGGGGCCATACCCCTGGGCACCACTGCTGTGCCCC
CCAAAAAATAACAAAAATTCACTACCAGCCGCCGTAAAATACCCCTGTTT
ATTTGAGGCACCCTCAAGCAGAAACACTCTTGGATTTTCCGCACATAAGA
TCATAACCAATTGCGACGTCGGTATGAATGAGAAGCCGCGATGTCCTAGT
ACAATATGCGTTTGGTAATTGAACAGCGAACTGTAGACAGTTGCCGTATC
TGTAAGTCCCAGTATTTTTAGGCGGTTGATGCCGGCACTGCGTAGCGCTC
GCTAGTGTATGCTGTGCTGCTATTATAGTAGTAGTGCTCGAATACCAAAT
TCAAAAATGTGCACCGTTTGTTGTTTTTATAGAAGAGGGAAGTTCACGAT
TCGTACTCCCGTTACTATGCTGTACTGCGTTTACCGTGTGTCGCAGCTTT
GCTGAAAGAGGCTGGACTTATCATGGAGTCCGTGCCTTTCGTCTCGCATT
ATGGTAACGGCCACGCCGGCCGTAAGAAAAAGAAGCAGAAGCTCATGCTC
CCCAACCAGGGCTCCATCATCCTCACAGCGCACAAAGGAGATGTGTTAAT
CTGCAACGGCGGTACCGGGTCGAGATCGACGCCTTCGGCAGCGCGGGCGT
CAAGACGCAACGCCGTCGGTTCTCCTGCCGACACCGCCTTCAACGCAGGG
GCTGTGGTATCCCAGCAGCGCCCACCGAAGGGAACGTATATCACCCAAAA
CGCGGCAGAGTTTCTGATCCGACGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig34834:1105..2382-

>mRNA_H-paniculata_contig34834.9290.1 ID=mRNA_H-paniculata_contig34834.9290.1|Name=mRNA_H-paniculata_contig34834.9290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig34834:1105..2382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAAGATATCCACCGCGGATGTACTTCAAGAGGGGTTCGACATGCAGCA
ACAGGTACTGCATCCGCCGGGCACAAAGGTCATGCTGGCGTTCTTGAACA
TCGCGAGCTGTCCTTCAATCATCACCTACGGCTCCACTCTGACCCCAGTC
CTGAAGAAGGCCTTGATCTTTCTCTCGAACAACTTGGACGAGAAGGGCAC
CATCGCCCTGGCTCTTCCTGACATGTTGTGTGACAGCTCACATCTGAGAG
ACGAAGATATCCACCGCGGATGTACTTCAAGAGGGGTTCGACATGCAGCA
ACAGGTACTGCATCCGCCGGGCACAAAGGTCATGCTGGCGTTCTTGAACA
TCGCGAGCTGTCCTTCAATCATCACCTACGGCTCCACTCTGACCCCAGTC
CTGAAGAAGGCCTTGATCTTTCTCTCGAACAACTTGGACGAGAAGGGCAC
CATCGCCCTGGCTCTTCCTGACATGTTGTGTGACAGCTCACATCTGAGAG
CTTTGCTGAAAGAGGCTGGACTTATCATGGAGTCCGTGCCTTTCGTCTCG
CATTATGGTAACGGCCACGCCGGCCGTAAGAAAAAGAAGCAGAAGCTCAT
GCTCCCCAACCAGGGCTCCATCATCCTCACAGCGCACAAAGGAGATGTGT
TAATCTGCAACGGCGGTACCGGGTCGAGATCGACGCCTTCGGCAGCGCGG
GCGTCAAGACGCAACGCCGTCGGTTCTCCTGCCGACACCGCCTTCAACGC
AGGGGCTGTGGTATCCCAGCAGCGCCCACCGAAGGGAACGTATATCACCC
AAAACGCGGCAGAGTTTCTGATCCGACGGTAACTTTGCTGAAAGAGGCTG
GACTTATCATGGAGTCCGTGCCTTTCGTCTCGCATTATGGTAACGGCCAC
GCCGGCCGTAAGAAAAAGAAGCAGAAGCTCATGCTCCCCAACCAGGGCTC
CATCATCCTCACAGCGCACAAAGGAGATGTGTTAATCTGCAACGGCGGTA
CCGGGTCGAGATCGACGCCTTCGGCAGCGCGGGCGTCAAGACGCAACGCC
GTCGGTTCTCCTGCCGACACCGCCTTCAACGCAGGGGCTGTGGTATCCCA
GCAGCGCCCACCGAAGGGAACGTATATCACCCAAAACGCGGCAGAGTTTC
TGATCCGACGGTAA
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