mRNA_H-paniculata_contig3482.9287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3482.9287.1
Unique NamemRNA_H-paniculata_contig3482.9287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3482.9287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3482contigH-paniculata_contig3482:5603..9439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1637
Cds size1398
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3482.9287.1prot_H-paniculata_contig3482.9287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3482 5643..9240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.923191-UTR-H-paniculata_contig3482:5602..56421622930075.923191-UTR-H-paniculata_contig3482:5602..5642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3482 5603..5642 +
1691481136.7937684-UTR-H-paniculata_contig3482:5602..56421691481136.7937684-UTR-H-paniculata_contig3482:5602..5642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3482 5603..5642 +
1622930075.991617-UTR-H-paniculata_contig3482:9240..94391622930075.991617-UTR-H-paniculata_contig3482:9240..9439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3482 9241..9439 +
1691481136.8338752-UTR-H-paniculata_contig3482:9240..94391691481136.8338752-UTR-H-paniculata_contig3482:9240..9439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3482 9241..9439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.9427426-CDS-H-paniculata_contig3482:5642..57581622930075.9427426-CDS-H-paniculata_contig3482:5642..5758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3482 5643..5758 +
1691481136.8037882-CDS-H-paniculata_contig3482:5642..57581691481136.8037882-CDS-H-paniculata_contig3482:5642..5758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3482 5643..5758 +
1622930075.9570959-CDS-H-paniculata_contig3482:6628..71661622930075.9570959-CDS-H-paniculata_contig3482:6628..7166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3482 6629..7166 +
1691481136.8138885-CDS-H-paniculata_contig3482:6628..71661691481136.8138885-CDS-H-paniculata_contig3482:6628..7166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3482 6629..7166 +
1622930075.9732342-CDS-H-paniculata_contig3482:8496..92401622930075.9732342-CDS-H-paniculata_contig3482:8496..9240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3482 8497..9240 +
1691481136.8241782-CDS-H-paniculata_contig3482:8496..92401691481136.8241782-CDS-H-paniculata_contig3482:8496..9240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3482 8497..9240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3482.9287.1

>prot_H-paniculata_contig3482.9287.1 ID=prot_H-paniculata_contig3482.9287.1|Name=mRNA_H-paniculata_contig3482.9287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=466bp
MESEQSSTVARFIHRFREAQPASPRQRHRDRAAMNEQFWWTRSSQDSCSS
YPSVRNSHPSYDREELQGLESQGVWDGGKEKENPKEIPQGLISPSRTSSD
TQRAATNQHAWIADRSSYENVLGWNPMPSLPSPTPPGPPPSDEDESYTTH
PALEGEQQGPEPISSLVSRCSHIPSQDVTTIQDVDDTERKRLDLDMRANM
LLERCRELLAAPLVAPGLVTGSTESKAGTGDEDEVKEAGGVLGEFSDSTL
QGLEQRARVLLGDTEPLDHHTSSDIAELSWTSDVELSRRRDQQGRPDYPA
WNNKVDRSDAMTLSIDWETGPTLPRHAGRESRSKKNSQQILEGSQRGSNF
LPRRGETRSLAGVLETLLAHTGGPGVASQIGESSTNELPCGLQIGQSMQG
ACFSKVALPSAKESGASREAVPLDSPEAQWVAWLDEFIEDPVVKALLQRA
DYINSELLRRHASHC*
back to top

mRNA from alignment at H-paniculata_contig3482:5603..9439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3482.9287.1 ID=mRNA_H-paniculata_contig3482.9287.1|Name=mRNA_H-paniculata_contig3482.9287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3837bp|location=Sequence derived from alignment at H-paniculata_contig3482:5603..9439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATCATCTTTAGCCCAGTTCTGGAGGCAGCTAAAATACGATGGAAAGCG
AGCAGTCATCGACAGTTGCCCGATTTATTCATCGATTCCGCGAGGCACAA
CCAGCCTCCCCACGCCAGCGACATAGAGATCGAGCTGCAATGAACGAGCA
GTTTTGGTGAGTGCATCGTTGCTCTATACGGTACTTTTGTACATCGTCTT
CAACCAGCGGCAGCAAATGTCTGCACAAGTACAGGAAAGAGCACAGTAGC
CGTAGAAGGGTACTTTACTGGACGTTACAGTACTACTGCTTGTCTTGCAC
TCTGCGCTGAAAAGCTAGCGGCATGAGGATTATCGGAATACATATCTTGA
GTCGGGGTGGGGTGTATTCACACGTGAGCAAGGAGTTCCACTGAACTGAG
GGCCTGAACCAACCTCCCCTCTCGGCCCGCGCTATTGTTCGCCCCTTACC
GCACTTCTTTGTGTAGTTTCTGCTGCACCGTGTAGGTGATCAGTAGGCAT
TTTTATACGCTATGCAAGTACTACTGAATATGTATAGCACGTGCCACAGC
ACAGAGGAGCGATCAGTGCTGCGGCACCACCTTGTCCAACGTCATATGTT
CGTCTTGTGTAGAATCCGACCGATAGGTGTGTTTGCGTCATATAGTTCAT
ACCTGGACTACCCAGACCCGAAGATCGAAAAGAGGAATCAAAACTAGTCT
CTGGACAACCTTTCATGGAGCTCATCTGCTAACTACTTAAAACATTTAAT
ATAAATCGGATAGCAGGGAAATCCAGCACGGCGTGTTCTGCTGTAAATTT
TGATTTTTTGTTGCTGTTCGTATAGCCCCCATGATACCGCCAAGACCTGC
AAGCTTCTCTCCTCACCAACCCAAGAAACGCACGCGCCGTCCACTAACGT
TGCAGTGTTCCGAAACTTTGGCAGGGTATGTTTTATGCACTAGCTCCTCC
TTGCGAATTAGTTTGCCCCGCAGGAATGCTACTGCCATACTCGCCCGCTG
ACCCACATATTGTTAATCAACAACAGGTGGACAAGATCTAGTCAAGATAG
TTGCAGCAGTTACCCCTCAGTCAGAAATAGCCATCCAAGCTATGACAGGG
AAGAGTTACAGGGCCTGGAGTCACAAGGTGTCTGGGATGGTGGGAAAGAG
AAAGAGAACCCAAAAGAAATACCGCAGGGATTGATTTCCCCGAGCCGAAC
ATCGTCGGACACACAGAGGGCAGCTACGAATCAGCATGCCTGGATCGCCG
ATCGTAGTAGCTATGAGAATGTGCTGGGTTGGAATCCAATGCCGTCGCTG
CCTTCACCCACTCCCCCCGGTCCGCCTCCGTCTGATGAAGATGAGTCGTA
CACAACACATCCAGCGCTTGAAGGAGAGCAACAAGGACCGGAGCCCATAT
CATCTCTTGTTAGCCGATGCAGCCACATACCCTCACAAGACGTGACCACG
ATTCAGGACGTTGATGACACCGAGCGGAAAAGGCTCGACTTGGATATGCG
TGCAAACATGTTGCTGGAACGCTGCCGAGAGCTGCTTGCCGCTCCATTGG
TCGCGCCCGGGCTGGTGAGCTTTGTTGTTGAAGAGGTTGATATAGAAACA
GATCAAACTTTGATGATGGCACATGCATGACCAACTGAAACACAAGGTGC
CAGGTGACCTTCAACTCATGCTGCGTTATATCGGCTGACATAATTGATGG
CGTAGGTGCAGCGTCAACTCATGACCTCTCTGCAAAAACGATAACTTGTC
GCGCTGAAGGAAGGCTACTATGTACCCGCCTGCTAGGGTTGTACTATGTT
AGCCACAAACAATGTAAGCATCCTGATATCATAGCGTAATACGTGTTTCC
TCCATGTACCAGGGGTGCCGCAAAGCAAAACTCAGCTGTTGCATCGCAGC
TGCCACGCGGGTGCCGCATGCATGACCAACCTAGCGGCAAAGCTAGGAGC
CAAACGGTCCCCCTCGGCTCGTGAGGGGGGCTCGCTGGAAATGCTGTCAG
AGGCAAAGAAGAAGCGGGGTTGGACTTTATCTTCAAGACCAGGCTATTAG
TTGCGCACGGTAACAACCTTGAAATCCTAGGATTATATTCGCCACGACAG
GAATTGATATCAACTAGCGTAGCACATTTACATGAACACAAACGCGAAAA
TTACTAAAGCGATGTTTGCGAAGTTTTATATGTCCGGTCGATTTTCTTTC
GATATGGAGAAACGAACAGACGTTTTGCCTTGGCCACCTCTGTCATGTGA
TACACAGTTCATACCGAAGAAGAGGCCTAAAACTAGATGCTATCGATACA
GCAGAATATCGTTTATAAAATTGTGGTGAGTGCTGTCTATGATGCACTAC
AAACTCTCAGCCTCTCGGTTGAAGAGGTGACGCGATATATATACTACAAT
GTTTGTATATGTCCTTCTCATCTTGCTGGTAGAATGCAATTTATGTCAAG
CAAGGTTGACGCTGTTGGTTGTTATCGCTGTACAGCTGCCCAGCCGTGGA
CTGGAGTTGATCCATGTGATACGGAGGCGAAGCCGAACGTTCATCCCTCC
ATAATATAAACTAGCTGTTCTTCGTTTAGACTTGTGAACCAGGTCTTGAA
GCACGTCAACTGTAACTTCAAGTGTTTGTGCGTATTATAACCTCTACGAA
AAGTCGACTTACGTAAGGGTACAAATCATGTTCCAACTACTATAGCCGTG
ACTGGTAGGAGTCATCCCGCAGTATCCCGTGGTATTTCCTCTAATATACA
ATGGTGAAACCGGCATACTATGGAGTATATTATAACGCGTTTCACTCTTG
TAACACCAAGTTAATACGTAATCAATTGGGAGGAAATATGTTAGCTCTTG
AATCAGCCAAAATAACGTTGATGTGTACCCCATTGCTTGCGTAGGTTACT
GGGAGCACTGAATCGAAAGCTGGTACAGGCGATGAAGACGAGGTAAAAGA
AGCTGGTGGTGTACTTGGCGAGTTTTCGGATAGTACTCTACAGGGCTTGG
AGCAGCGTGCGCGGGTGCTGCTAGGGGACACCGAGCCGCTCGATCACCAT
ACTTCATCAGACATTGCAGAACTGAGTTGGACGTCTGATGTGGAACTATC
TCGCCGTCGTGATCAGCAAGGACGGCCAGATTACCCTGCTTGGAATAACA
AAGTTGACCGAAGTGATGCAATGACTCTTTCAATTGATTGGGAAACGGGG
CCGACTCTGCCACGCCATGCTGGGCGTGAAAGCCGGTCGAAAAAGAACAG
CCAACAGATATTGGAAGGGAGTCAACGCGGATCGAATTTTTTACCACGGC
GTGGAGAGACGAGATCCTTGGCAGGCGTATTGGAAACATTGCTTGCACAT
ACAGGCGGCCCAGGGGTTGCTTCACAAATCGGGGAATCGTCGACGAATGA
ATTACCTTGCGGGCTTCAAATCGGCCAGTCTATGCAGGGCGCTTGCTTTT
CGAAAGTCGCGTTGCCATCTGCAAAAGAATCGGGAGCATCTAGAGAAGCT
GTACCCCTTGACTCTCCTGAAGCACAATGGGTAGCGTGGTTGGACGAGTT
TATCGAGGATCCGGTAGTCAAAGCGCTTCTTCAGCGTGCGGACTACATTA
ACTCGGAGCTCCTGAGGCGTCACGCTTCACACTGTTGATGGCGCGTTTTC
ATTGCATCTCTAAATTAACGAGTTTGTATTTGCAAAACACCATGAGTAGA
GCTCGAAATTCAAGAGTACCAGAGCAAATTCATTCGTTCTCGCTACATCC
TAGTGCCCACCTGTATGTCTCCATGTGCCTTATATATCGGCCGTTAAACC
TTTAACATGCAACTTGTTGCAATGCCCTATTTGCTAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3482:5603..9439+

>mRNA_H-paniculata_contig3482.9287.1 ID=mRNA_H-paniculata_contig3482.9287.1|Name=mRNA_H-paniculata_contig3482.9287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2796bp|location=Sequence derived from alignment at H-paniculata_contig3482:5603..9439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAGCGAGCAGTCATCGACAGTTGCCCGATTTATTCATCGATTCCG
CGAGGCACAACCAGCCTCCCCACGCCAGCGACATAGAGATCGAGCTGCAA
TGAACGAGCAGTTTTGATGGAAAGCGAGCAGTCATCGACAGTTGCCCGAT
TTATTCATCGATTCCGCGAGGCACAACCAGCCTCCCCACGCCAGCGACAT
AGAGATCGAGCTGCAATGAACGAGCAGTTTTGGTGGACAAGATCTAGTCA
AGATAGTTGCAGCAGTTACCCCTCAGTCAGAAATAGCCATCCAAGCTATG
ACAGGGAAGAGTTACAGGGCCTGGAGTCACAAGGTGTCTGGGATGGTGGG
AAAGAGAAAGAGAACCCAAAAGAAATACCGCAGGGATTGATTTCCCCGAG
CCGAACATCGTCGGACACACAGAGGGCAGCTACGAATCAGCATGCCTGGA
TCGCCGATCGTAGTAGCTATGAGAATGTGCTGGGTTGGAATCCAATGCCG
TCGCTGCCTTCACCCACTCCCCCCGGTCCGCCTCCGTCTGATGAAGATGA
GTCGTACACAACACATCCAGCGCTTGAAGGAGAGCAACAAGGACCGGAGC
CCATATCATCTCTTGTTAGCCGATGCAGCCACATACCCTCACAAGACGTG
ACCACGATTCAGGACGTTGATGACACCGAGCGGAAAAGGCTCGACTTGGA
TATGCGTGCAAACATGTTGCTGGAACGCTGCCGAGAGCTGCTTGCCGCTC
CATTGGTCGCGCCCGGGCTGGTGGACAAGATCTAGTCAAGATAGTTGCAG
CAGTTACCCCTCAGTCAGAAATAGCCATCCAAGCTATGACAGGGAAGAGT
TACAGGGCCTGGAGTCACAAGGTGTCTGGGATGGTGGGAAAGAGAAAGAG
AACCCAAAAGAAATACCGCAGGGATTGATTTCCCCGAGCCGAACATCGTC
GGACACACAGAGGGCAGCTACGAATCAGCATGCCTGGATCGCCGATCGTA
GTAGCTATGAGAATGTGCTGGGTTGGAATCCAATGCCGTCGCTGCCTTCA
CCCACTCCCCCCGGTCCGCCTCCGTCTGATGAAGATGAGTCGTACACAAC
ACATCCAGCGCTTGAAGGAGAGCAACAAGGACCGGAGCCCATATCATCTC
TTGTTAGCCGATGCAGCCACATACCCTCACAAGACGTGACCACGATTCAG
GACGTTGATGACACCGAGCGGAAAAGGCTCGACTTGGATATGCGTGCAAA
CATGTTGCTGGAACGCTGCCGAGAGCTGCTTGCCGCTCCATTGGTCGCGC
CCGGGCTGGTTACTGGGAGCACTGAATCGAAAGCTGGTACAGGCGATGAA
GACGAGGTAAAAGAAGCTGGTGGTGTACTTGGCGAGTTTTCGGATAGTAC
TCTACAGGGCTTGGAGCAGCGTGCGCGGGTGCTGCTAGGGGACACCGAGC
CGCTCGATCACCATACTTCATCAGACATTGCAGAACTGAGTTGGACGTCT
GATGTGGAACTATCTCGCCGTCGTGATCAGCAAGGACGGCCAGATTACCC
TGCTTGGAATAACAAAGTTGACCGAAGTGATGCAATGACTCTTTCAATTG
ATTGGGAAACGGGGCCGACTCTGCCACGCCATGCTGGGCGTGAAAGCCGG
TCGAAAAAGAACAGCCAACAGATATTGGAAGGGAGTCAACGCGGATCGAA
TTTTTTACCACGGCGTGGAGAGACGAGATCCTTGGCAGGCGTATTGGAAA
CATTGCTTGCACATACAGGCGGCCCAGGGGTTGCTTCACAAATCGGGGAA
TCGTCGACGAATGAATTACCTTGCGGGCTTCAAATCGGCCAGTCTATGCA
GGGCGCTTGCTTTTCGAAAGTCGCGTTGCCATCTGCAAAAGAATCGGGAG
CATCTAGAGAAGCTGTACCCCTTGACTCTCCTGAAGCACAATGGGTAGCG
TGGTTGGACGAGTTTATCGAGGATCCGGTAGTCAAAGCGCTTCTTCAGCG
TGCGGACTACATTAACTCGGAGCTCCTGAGGCGTCACGCTTCACACTGTT
GAGTTACTGGGAGCACTGAATCGAAAGCTGGTACAGGCGATGAAGACGAG
GTAAAAGAAGCTGGTGGTGTACTTGGCGAGTTTTCGGATAGTACTCTACA
GGGCTTGGAGCAGCGTGCGCGGGTGCTGCTAGGGGACACCGAGCCGCTCG
ATCACCATACTTCATCAGACATTGCAGAACTGAGTTGGACGTCTGATGTG
GAACTATCTCGCCGTCGTGATCAGCAAGGACGGCCAGATTACCCTGCTTG
GAATAACAAAGTTGACCGAAGTGATGCAATGACTCTTTCAATTGATTGGG
AAACGGGGCCGACTCTGCCACGCCATGCTGGGCGTGAAAGCCGGTCGAAA
AAGAACAGCCAACAGATATTGGAAGGGAGTCAACGCGGATCGAATTTTTT
ACCACGGCGTGGAGAGACGAGATCCTTGGCAGGCGTATTGGAAACATTGC
TTGCACATACAGGCGGCCCAGGGGTTGCTTCACAAATCGGGGAATCGTCG
ACGAATGAATTACCTTGCGGGCTTCAAATCGGCCAGTCTATGCAGGGCGC
TTGCTTTTCGAAAGTCGCGTTGCCATCTGCAAAAGAATCGGGAGCATCTA
GAGAAGCTGTACCCCTTGACTCTCCTGAAGCACAATGGGTAGCGTGGTTG
GACGAGTTTATCGAGGATCCGGTAGTCAAAGCGCTTCTTCAGCGTGCGGA
CTACATTAACTCGGAGCTCCTGAGGCGTCACGCTTCACACTGTTGA
back to top