mRNA_H-paniculata_contig34814.9286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34814.9286.1
Unique NamemRNA_H-paniculata_contig34814.9286.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.550e-26
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   10 GEE-KGSIKVQRKSHIPKVMFICAVSRPDPSRDLDSKIGIWRVCVMK-AQRT-------TARQERG----------------EEYSGDTTIDSEYYQEWYEHKLLPAIKEKMPWLELRGGGIVQQDGASPH 327
            GE+  G  +V  +SH+PK+M I A +RPDP+ D D KIGIWR+CV++ AQR+       TA   R                 EEY  D TID+E+Y++WY   LLPAIKEKMPWL  +   +VQQDGASPH
Sbjct:  176 GEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRV-VVQQDGASPH 305          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: A0A024TAS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAS5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.900e-10
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 1
Query:   34 VQRKSHIPKVMFICAVSRPDPSRDLDSKIGIWRVCVMKAQ-RTTARQERGEEYSGDTTIDSEYYQEWYEHKLLPAIKEKMPW-LELRGGGIV-QQDGASPH 327
            +Q KSHI KVMF+CAV+RP      D ++G W +    A  R++  +  G E      +  + Y+     K++PAIK K  W + + GG IV QQD A PH
Sbjct:   21 LQSKSHITKVMFLCAVARP--RNGWDGRLGCWEIVERAAAVRSSHNRPAGTEVVKSVVVTKDVYRRILVDKVVPAIKSKWKWPVGVDGGAIVLQQDNARPH 119          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: A0A024TJH6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJH6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.590e-10
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 MLPGEEKGSIKVQRKSHIPKVMFICAVSRPDPSRDLDSKIGIWRVCVMKAQRTTARQERGEEYSGDTTI--DSEYYQEWYEHKLLPAIKEKMPWLELRGGGIVQQDGASPH 327
            +L GEE      + K  I KVMF+CAV+RP     +D KIG+W        R ++R          T I  D+  Y+++  +K++PAIK  +P +  R   ++Q D A+PH
Sbjct:   23 LLEGEEVPRRACKSKGFITKVMFLCAVARPQMDIGVDEKIGLWPFVSQSRARRSSRNRPAGSMVITTLINVDATTYRDYVLNKVVPAIKASLPCVSKRV--VLQHDNATPH 131          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: A0A484N8H9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N8H9_9ASTE)

HSP 1 Score: 64.7 bits (156), Expect = 6.990e-10
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1
Query:    4 LPGEEKGSIKVQRKSHIPKVMFICAVSRPDPSRD----LDSKIGIWRVCV-MKAQRTTARQERGE-EYSGDTTIDSEYYQEWYEHKLLPAIKEKMPWLELRGGGIVQQDGASPH 327
            LP E       Q KSHIPK+MF+ AVSRP    D     D KIGI+      +A+R++  +  G  E    T+I+ +  ++    KLLPAIKEK  W       I+QQD A PH
Sbjct:  229 LPDEPDPYRTAQSKSHIPKIMFLAAVSRPRFGNDGAVVWDGKIGIFPFTYEAQAKRSSKNRPAGTLEVKATTSINRDEIKKMLLEKLLPAIKEK--WPGPTRDVIIQQDNAKPH 340          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08)

HSP 1 Score: 63.2 bits (152), Expect = 2.410e-9
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    1 MLPGEEKGSIKVQRKSHIPKVMFICAVSRPDPSRD----LDSKIGIWRVC-VMKAQRTTARQERGE-EYSGDTTIDSEYYQEWYEHKLLPAIKEKMP-WLELRGGGIVQQDGASPH 327
            +LP E++     + K +I KVMF+CAVSRP    +     D K+GI+     + AQR +  ++RG  E    TT++ E  +    HK++PAIK K P W        +QQD A+PH
Sbjct:  188 LLPDEDEPYRSCKSKRYITKVMFMCAVSRPQFDSEGQPTYDGKVGIFPFTEAVPAQRKSKNRDRGTLETKPITTLNKEVMRGCIIHKIIPAIKAKWPDWASKEI--YIQQDNATPH 301          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.440e-9
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 MLPGEEKGSIKVQRKSHIPKVMFICAVSRPD----PSRDLDSKIGIWRVCVM-KAQRTTARQERGEEYSGDTTIDSEYYQEWYEHKLLPAIKEKMP--WLELRGGGIVQQDGASPH 327
            ++ GEE  S   + KSHIPK+MF+ AV RP      S+  D K+GI+   +   A+R++  Q +G       T+  + Y +   + +LPAI  K P  W  L     +QQDGA PH
Sbjct:  171 LVKGEELPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFPSRWKTL----YIQQDGARPH 282          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: UPI001C264D25 (uncharacterized protein LOC121774216 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C264D25)

HSP 1 Score: 59.7 bits (143), Expect = 3.910e-8
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 MLPGEEKGSIKVQRKSHIPKVMFICAVSRP----DPSRDLDSKIGIWRVC-VMKAQRTTARQERGE-EYSGDTTIDSEYYQEWYEHKLLPAIKEKMPWLELRGGGIVQQDGASPH 327
            +LP E++     + K +I KVMF+CAVSRP    +     D K+GI+    V+ AQR +  + RG  E     ++     ++   HK++PAIK K P +       +QQD A+PH
Sbjct:  150 LLPDEDEPYRSCKSKRYITKVMFMCAVSRPQFDANGQATYDGKVGIFPFTEVLPAQRKSKNRARGTMETKAINSVTKAVMRDCLIHKIIPAIKAKWP-VGASKDIYIQQDNATPH 263          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: Q8W1P5_ZEADI (Transposase (Fragment) n=1 Tax=Zea diploperennis TaxID=4576 RepID=Q8W1P5_ZEADI)

HSP 1 Score: 56.2 bits (134), Expect = 8.680e-8
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 MLPGEEKGSIKVQRKSHIPKVMFICAVSRPDPSRDL---DSKIGIWRVCVM-KAQRTTARQERGE-EYSGDTTIDSEYYQEWYEHKLLPAIKEKMPWLELRGGGIVQQDGA 318
            +LP E+      + K++IPK+MF+CA SRP     +   D KIG + +    +A+R++  +  G  E    T+I  +  +E+   K+LPAI+ K P  EL     +QQD A
Sbjct:   17 LLPDEDDPHRTCKSKNNIPKLMFLCATSRPRFENGVCTFDGKIGCFPLVTFERAKRSSVNRPAGTMEVKPITSIKRDVIREFLIEKVLPAIRAKWPRDELNKPIYIQQDNA 127          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: UPI001C27ABF3 (uncharacterized protein LOC121745765 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27ABF3)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 MLPGEEKGSIKVQRKSHIPKVMFICAVSRP----DPSRDLDSKIGIWRVC-VMKAQRTTARQERGE-EYSGDTTIDSEYYQEWYEHKLLPAIKEKMP-WLELRGGGIVQQDGASPH 327
            +LP E++     + K +I KVMF+CAVSRP    D     D K+GI+    V+ AQR +  + RG  E     ++     ++   +K++PAIK K P W        +QQD A+PH
Sbjct:  187 LLPDEDEPYRSCKSKRYITKVMFMCAVSRPQFGMDGQATYDGKVGIFPFTEVLLAQRKSKNRARGTMETKSINSVTKAVMRDCLINKIIPAIKAKWPVWASK--DIYIQQDNATPH 300          
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Match: A0A5D6XR23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR23_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-7
Identity = 38/117 (32.48%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 MLPGEEKGSIKVQRKSHIPKVMFICAVSRP--DPSR--DLDSKIGIWRVCV-MKAQRTTARQERGEEYSGDTTIDSEYYQEWYEHKLLPAIKEKMP-WLELRGGG--IVQQDGASPH 327
            + P E       Q KSH+PK+MF+CA++RP  DP+     D  IGIW     + A R+++ ++ G   +     + E Y+     +++PA+  K P W    GG   ++Q+D A+PH
Sbjct:   46 LTPTEPNPQRHAQHKSHLPKLMFLCAITRPRVDPATGASFDRGIGIWPFAEEIPAYRSSSNRQAGTLETKPLPANKETYKAMIMTEVVPAVVSKWPAW----GGRHIVLQRDNANPH 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34814.9286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE2.550e-2648.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024TAS5_9STRA1.900e-1038.61Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TJH6_9STRA4.590e-1034.23Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A484N8H9_9ASTE6.990e-1040.35Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI0020091A082.410e-937.07uncharacterized protein LOC125206097 n=1 Tax=Salvi... [more]
A0A6G0X8U9_9STRA2.440e-936.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI001C264D253.910e-834.78uncharacterized protein LOC121774216 n=2 Tax=Salvi... [more]
Q8W1P5_ZEADI8.680e-834.23Transposase (Fragment) n=1 Tax=Zea diploperennis T... [more]
UPI001C27ABF31.010e-735.34uncharacterized protein LOC121745765 n=1 Tax=Salvi... [more]
A0A5D6XR23_9STRA1.550e-732.48Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34814contigH-paniculata_contig34814:612..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog67593.Physo125584
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QH7V@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.8704548-CDS-H-paniculata_contig34814:611..9381622930075.8704548-CDS-H-paniculata_contig34814:611..938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34814 612..938 -
1691481136.778586-CDS-H-paniculata_contig34814:611..9381691481136.778586-CDS-H-paniculata_contig34814:611..938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34814 612..938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34814.9286.1prot_H-paniculata_contig34814.9286.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34814 612..938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34814.9286.1

>prot_H-paniculata_contig34814.9286.1 ID=prot_H-paniculata_contig34814.9286.1|Name=mRNA_H-paniculata_contig34814.9286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MLPGEEKGSIKVQRKSHIPKVMFICAVSRPDPSRDLDSKIGIWRVCVMKA
QRTTARQERGEEYSGDTTIDSEYYQEWYEHKLLPAIKEKMPWLELRGGGI
VQQDGASPH
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mRNA from alignment at H-paniculata_contig34814:612..938-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34814.9286.1 ID=mRNA_H-paniculata_contig34814.9286.1|Name=mRNA_H-paniculata_contig34814.9286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig34814:612..938- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCCTGGAGAGGAGAAGGGCTCCATAAAGGTGCAGCGCAAGAGTCA TATTCCCAAGGTGATGTTCATCTGCGCCGTGTCGCGCCCGGATCCTTCCC GTGACCTCGATAGCAAGATCGGGATTTGGCGAGTTTGCGTCATGAAGGCG CAGAGGACTACGGCACGGCAGGAGAGGGGCGAAGAGTACTCGGGCGACAC CACCATTGACTCCGAGTACTACCAAGAGTGGTACGAGCATAAGCTGCTGC CCGCGATCAAGGAGAAGATGCCCTGGCTAGAATTGCGAGGGGGGGGGATC GTGCAGCAAGATGGCGCGAGCCCGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig34814:612..938-

>mRNA_H-paniculata_contig34814.9286.1 ID=mRNA_H-paniculata_contig34814.9286.1|Name=mRNA_H-paniculata_contig34814.9286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig34814:612..938- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCCTGGAGAGGAGAAGGGCTCCATAAAGGTGCAGCGCAAGAGTCA
TATTCCCAAGGTGATGTTCATCTGCGCCGTGTCGCGCCCGGATCCTTCCC
GTGACCTCGATAGCAAGATCGGGATTTGGCGAGTTTGCGTCATGAAGGCG
CAGAGGACTACGGCACGGCAGGAGAGGGGCGAAGAGTACTCGGGCGACAC
CACCATTGACTCCGAGTACTACCAAGAGTGGTACGAGCATAAGCTGCTGC
CCGCGATCAAGGAGAAGATGCCCTGGCTAGAATTGCGAGGGGGGGGGATC
GTGCAGCAAGATGGCGCGAGCCCGCACATGCTCCCTGGAGAGGAGAAGGG
CTCCATAAAGGTGCAGCGCAAGAGTCATATTCCCAAGGTGATGTTCATCT
GCGCCGTGTCGCGCCCGGATCCTTCCCGTGACCTCGATAGCAAGATCGGG
ATTTGGCGAGTTTGCGTCATGAAGGCGCAGAGGACTACGGCACGGCAGGA
GAGGGGCGAAGAGTACTCGGGCGACACCACCATTGACTCCGAGTACTACC
AAGAGTGGTACGAGCATAAGCTGCTGCCCGCGATCAAGGAGAAGATGCCC
TGGCTAGAATTGCGAGGGGGGGGGATCGTGCAGCAAGATGGCGCGAGCCC
GCAC
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