mRNA_H-paniculata_contig3481.9285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3481.9285.1
Unique NamemRNA_H-paniculata_contig3481.9285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3481.9285.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.230e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 CFTRPSYGIAGSRKAELCSQHARAGMVNVVGKTCGN 108
            C TRPSYG AG +KAE CSQH + GM+N+V K CG+
Sbjct:   32 CTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRCGH 67
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BLAST of mRNA_H-paniculata_contig3481.9285.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.460e-5
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 CFTRPSYGIAGSRKAELCSQHARAGMVNVVGKTC 102
            C  RP+YG+AGS+K E CSQHAR GMVNV  K C
Sbjct:    9 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_H-paniculata_contig3481.9285.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-5
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 CFTRPSYGIAGSRKAELCSQHARAGMVNVVGKTC 102
            C  RP+YG+AGS+K E CSQHAR GMVNV  K C
Sbjct:   69 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3481.9285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGG2_9PHAE6.230e-663.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI1.460e-567.65EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE1.700e-567.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3481contigH-paniculata_contig3481:472..1490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size702
Cds size702
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.80615-CDS-H-paniculata_contig3481:471..7311622930075.80615-CDS-H-paniculata_contig3481:471..731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3481 472..731 -
1691481136.7533388-CDS-H-paniculata_contig3481:471..7311691481136.7533388-CDS-H-paniculata_contig3481:471..731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3481 472..731 -
1622930075.820985-CDS-H-paniculata_contig3481:1048..14901622930075.820985-CDS-H-paniculata_contig3481:1048..1490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3481 1049..1490 -
1691481136.7622836-CDS-H-paniculata_contig3481:1048..14901691481136.7622836-CDS-H-paniculata_contig3481:1048..1490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3481 1049..1490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3481.9285.1prot_H-paniculata_contig3481.9285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3481 472..1490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3481.9285.1

>prot_H-paniculata_contig3481.9285.1 ID=prot_H-paniculata_contig3481.9285.1|Name=mRNA_H-paniculata_contig3481.9285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
CFTRPSYGIAGSRKAELCSQHARAGMVNVVGKTCGNEGCSRYRSHGITGS
RKAEEVCSQHARAGIVTVKNQTYNHEGCTTRPSHGVAGSRKAEFCSQHAR
ENMVNVVSKTCDKEGCSRQPSYGIACSRKAEFCSEHARVGMVSVKNRGML
NVVSKTYNEGCPTRPSYGVSGSRKAEGCAQYGRSGMVDVRNQMCGNKGCS
RLRSHGTVGSRKAEFCSQHARTGMVQTKSKKCSS
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mRNA from alignment at H-paniculata_contig3481:472..1490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3481.9285.1 ID=mRNA_H-paniculata_contig3481.9285.1|Name=mRNA_H-paniculata_contig3481.9285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1019bp|location=Sequence derived from alignment at H-paniculata_contig3481:472..1490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTCACAAGGCCATCCTACGGGATAGCGGGCAGTAGAAAGGCAGAGCT
CTGCTCCCAACACGCAAGGGCAGGGATGGTGAATGTCGTGGGGAAAACCT
GTGGCAACGAAGGCTGCTCCAGATATCGGTCGCACGGGATAACGGGTAGT
AGGAAGGCAGAAGAGGTCTGCTCCCAACACGCAAGGGCGGGAATAGTCAC
TGTCAAGAATCAGACGTACAACCATGAGGGTTGCACCACAAGGCCATCGC
ACGGTGTAGCGGGCAGCAGGAAGGCAGAGTTTTGTTCTCAGCATGCAAGG
GAAAATATGGTGAATGTCGTGAGCAAAACGTGCGATAAAGAGGGCTGCTC
CAGACAGCCGTCGTACGGGATAGCGTGCAGCAGAAAGGCAGAGTTCTGCT
CCGAACACGCAAGGGTGGGGATGGTGAGTGTCAAGAATCGAGGTGCGACC
ATGAGAGCTGCTCCAGACACCCATCGTACGGGATAGCTTGCAGCAGGAAG
GCAGAATGCTGCTCCCAACACGCAAGGGCGGGAATGGTCGACGTCAAGAA
TCAGATGTGTAACCGCAAGGGTTGTACCACAAGGTCATCGCACTGTGTAC
CGAGCAGCAAGAAGGCAGAGTTCTGCGCTCAGCATACAACGACAGGGATG
GTGAATGTCGTGAGCAAAACGTGTGGCAACGAGGGCTGTCCCAGACTGCG
GTCGTACGAGATAGCGGGCAGAAGGAAGGTAGAGTTCTGCTCCCAACACG
CAAGGGCAGGGATGCTGAACGTCGTGAGTAAAACATACAACGAGGGTTGT
CCCACAAGGCCGTCATACGGTGTATCAGGGAGCAGGAAGGCCGAGGGCTG
TGCACAGTATGGGAGGTCAGGGATGGTAGATGTCAGGAATCAGATGTGTG
GCAACAAGGGTTGCTCCAGACTGCGGTCGCACGGGACAGTGGGCAGCAGG
AAGGCAGAGTTCTGCTCCCAGCACGCGAGGACGGGGATGGTCCAGACCAA
AAGCAAGAAGTGTAGTAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig3481:472..1490-

>mRNA_H-paniculata_contig3481.9285.1 ID=mRNA_H-paniculata_contig3481.9285.1|Name=mRNA_H-paniculata_contig3481.9285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig3481:472..1490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTCACAAGGCCATCCTACGGGATAGCGGGCAGTAGAAAGGCAGAGCT
CTGCTCCCAACACGCAAGGGCAGGGATGGTGAATGTCGTGGGGAAAACCT
GTGGCAACGAAGGCTGCTCCAGATATCGGTCGCACGGGATAACGGGTAGT
AGGAAGGCAGAAGAGGTCTGCTCCCAACACGCAAGGGCGGGAATAGTCAC
TGTCAAGAATCAGACGTACAACCATGAGGGTTGCACCACAAGGCCATCGC
ACGGTGTAGCGGGCAGCAGGAAGGCAGAGTTTTGTTCTCAGCATGCAAGG
GAAAATATGGTGAATGTCGTGAGCAAAACGTGCGATAAAGAGGGCTGCTC
CAGACAGCCGTCGTACGGGATAGCGTGCAGCAGAAAGGCAGAGTTCTGCT
CCGAACACGCAAGGGTGGGGATGGTGAGTGTCAAGAATCGAGTGCTTCAC
AAGGCCATCCTACGGGATAGCGGGCAGTAGAAAGGCAGAGCTCTGCTCCC
AACACGCAAGGGCAGGGATGGTGAATGTCGTGGGGAAAACCTGTGGCAAC
GAAGGCTGCTCCAGATATCGGTCGCACGGGATAACGGGTAGTAGGAAGGC
AGAAGAGGTCTGCTCCCAACACGCAAGGGCGGGAATAGTCACTGTCAAGA
ATCAGACGTACAACCATGAGGGTTGCACCACAAGGCCATCGCACGGTGTA
GCGGGCAGCAGGAAGGCAGAGTTTTGTTCTCAGCATGCAAGGGAAAATAT
GGTGAATGTCGTGAGCAAAACGTGCGATAAAGAGGGCTGCTCCAGACAGC
CGTCGTACGGGATAGCGTGCAGCAGAAAGGCAGAGTTCTGCTCCGAACAC
GCAAGGGTGGGGATGGTGAGTGTCAAGAATCGAGGGATGCTGAACGTCGT
GAGTAAAACATACAACGAGGGTTGTCCCACAAGGCCGTCATACGGTGTAT
CAGGGAGCAGGAAGGCCGAGGGCTGTGCACAGTATGGGAGGTCAGGGATG
GTAGATGTCAGGAATCAGATGTGTGGCAACAAGGGTTGCTCCAGACTGCG
GTCGCACGGGACAGTGGGCAGCAGGAAGGCAGAGTTCTGCTCCCAGCACG
CGAGGACGGGGATGGTCCAGACCAAAAGCAAGAAGTGTAGTAGTGGATGC
TGAACGTCGTGAGTAAAACATACAACGAGGGTTGTCCCACAAGGCCGTCA
TACGGTGTATCAGGGAGCAGGAAGGCCGAGGGCTGTGCACAGTATGGGAG
GTCAGGGATGGTAGATGTCAGGAATCAGATGTGTGGCAACAAGGGTTGCT
CCAGACTGCGGTCGCACGGGACAGTGGGCAGCAGGAAGGCAGAGTTCTGC
TCCCAGCACGCGAGGACGGGGATGGTCCAGACCAAAAGCAAGAAGTGTAG
TAGT
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