mRNA_H-paniculata_contig34806.9283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6G0X235_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X235_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.310e-14 Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
W +A+++E + L W VD +P+ +NVVS +WVF K D +G+V K KARL+ARGFSQQ+ V + E ++P + S+
Sbjct: 33 WREAMQVEIDNLIENGTWQLVD-LPRDTNVVSNKWVFKVKYDSKGDVEKFKARLVARGFSQQYGVDYTETYSPVIKQQSV 111
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: S4NP08_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pararge aegeria TaxID=116150 RepID=S4NP08_9NEOP) HSP 1 Score: 70.5 bits (171), Expect = 4.410e-14 Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
D W KA++ E E L + + W+ V+ +P + N+VS +WVFA K ++ G T+ KARL+ARGF+Q++ + E FAP +++
Sbjct: 5 DKWLKAIQSEIESLRNNKTWDLVE-IPNNVNIVSCKWVFAIKNNESGEPTRYKARLVARGFTQEYLQDYDETFAPVARMTTL 85
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6L2P044_TANCI (Copia-type polyprotein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P044_TANCI) HSP 1 Score: 74.3 bits (181), Expect = 1.170e-13 Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
W KA+ +E + +E + WN +D +PK + + +WVF K++++G V K KARL+ARG+ Q+ V ++E++AP +I
Sbjct: 1347 WKKAMDLEIQAIEKNQTWNLID-LPKGTKCIGVKWVFKTKLNEKGEVEKHKARLVARGYRQEFGVDYVEIYAPVARMDTI 1425
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI) HSP 1 Score: 73.9 bits (180), Expect = 1.580e-13 Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
W +A+++E + L++ W VD +P + ++A+WVF K D GNV+K KARL+ARGF+Q H + + + + P V+ +S+
Sbjct: 878 WEEAIKVELDSLDNTGTWTIVD-LPAARKAITAKWVFKTKQDADGNVSKYKARLVARGFTQMHGIDYHDTYLPVVSMTSL 956
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: Q9ZQE9_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQE9_ARATH) HSP 1 Score: 72.8 bits (177), Expect = 4.040e-13 Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAP 225
W +A+ E + +E R W VD P+ NV+S +W++ K D GN K KARL+ARGFSQ++ + +LE FAP
Sbjct: 849 WEEAMNEEIKVIEKNRTWKLVDK-PEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAP 920
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A535F797_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F797_9CHLR) HSP 1 Score: 72.4 bits (176), Expect = 5.520e-13 Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
W+ A+ E + + + W VD PK N+VS++WVF K G + + KARL+ARGFSQQH + + E FAP V S+
Sbjct: 830 WSAAINEELQSIATNTVWELVDT-PKGVNIVSSKWVFKLKCLPDGRIDRYKARLVARGFSQQHGIDYYETFAPVVRLESL 908
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6G0WWJ4_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWJ4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 9.930e-13 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 1 DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
++W A+ E E L W VD P +N+VS +W F K D G+V K KARL+ARGFSQQ+ V + E F+P + S+
Sbjct: 399 NMWRDAMIAEIENLIENGTWQLVDR-PTDTNIVSNKWAFKVKYDSNGDVEKFKARLVARGFSQQYGVDYTETFSPVIKLQSV 479
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: UPI001A562A11 (uncharacterized protein n=3 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A562A11) HSP 1 Score: 71.2 bits (173), Expect = 1.370e-12 Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
W +A+R E +GLE++ W VD +PK +N V WV K D +TK KARL+ARGF+Q+ + + EVFAP SI
Sbjct: 45 WEEAMRKELDGLEAMGTWEIVD-LPKGANTVDTCWVLKIKTDANLVLTKFKARLVARGFTQREGIDYTEVFAPVAPIQSI 123
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A2K3N6U7_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N6U7_TRIPR) HSP 1 Score: 70.9 bits (172), Expect = 1.790e-12 Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 1 DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
++W KA+ E E +ES W + +P S + +W++ K++++G V K KARL+A+G+SQQ+ + F EVFAP +I
Sbjct: 26 EVWRKAMDHEIESIESNDTWELTE-LPSGSKKIGVKWIYKTKLNEKGKVEKYKARLIAKGYSQQYGIYFKEVFAPVARRDTI 106
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS) HSP 1 Score: 70.9 bits (172), Expect = 1.920e-12 Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAP 225
W +A++ E E +E + W VD P+ NV+S +W++ K GN K KARL+ARGFSQ++ V +LE FAP
Sbjct: 865 WEEAMKEEIEMIEKNKTWKLVDK-PEKKNVISVKWIYKIKTYANGNHIKHKARLVARGFSQEYGVDYLETFAP 936 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34806.9283.1 >prot_H-paniculata_contig34806.9283.1 ID=prot_H-paniculata_contig34806.9283.1|Name=mRNA_H-paniculata_contig34806.9283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTback to top mRNA from alignment at H-paniculata_contig34806:1761..2009- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34806.9283.1 ID=mRNA_H-paniculata_contig34806.9283.1|Name=mRNA_H-paniculata_contig34806.9283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig34806:1761..2009- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34806:1761..2009- >mRNA_H-paniculata_contig34806.9283.1 ID=mRNA_H-paniculata_contig34806.9283.1|Name=mRNA_H-paniculata_contig34806.9283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig34806:1761..2009- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |