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Homology
BLAST of mRNA_H-paniculata_contig3479.9277.1 vs. uniprot
Match: A0A6H5L3J3_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J3_9PHAE) HSP 1 Score: 194 bits (494), Expect = 2.050e-54 Identity = 104/119 (87.39%), Postives = 108/119 (90.76%), Query Frame = 1
Query: 25 ISGDVLTVMSVTANADGWSEAVGAALATRARAGYVFAQEVDPDSPLSTEFLREEFTDERSGARKALEVRLRLIPSSQKVLLCSAWVDSGEYLAAAAKLVAQCQAHVFGIACVRFEQNPS 381
SGD LTV+SVTANADGWSEAVGAALATRARAGYVFAQEVDPDS STEF+RE F DE SGARKALE+R RLIP SQKVLLCSAWVDSGEYLAAAA+LVAQCQA VFGIACVRFEQN S
Sbjct: 257 FSGDELTVLSVTANADGWSEAVGAALATRARAGYVFAQEVDPDSQQSTEFVREVFVDESSGARKALELRRRLIPVSQKVLLCSAWVDSGEYLAAAARLVAQCQAEVFGIACVRFEQNCS 375
BLAST of mRNA_H-paniculata_contig3479.9277.1 vs. uniprot
Match: D8LJY7_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY7_ECTSI) HSP 1 Score: 194 bits (492), Expect = 3.780e-54 Identity = 105/124 (84.68%), Postives = 109/124 (87.90%), Query Frame = 1
Query: 10 SSKGSISGDVLTVMSVTANADGWSEAVGAALATRARAGYVFAQEVDPDSPLSTEFLREEFTDERSGARKALEVRLRLIPSSQKVLLCSAWVDSGEYLAAAAKLVAQCQAHVFGIACVRFEQNPS 381
S K SGD LTV+SVTANADGWSEAVGAALATRARAGYVFAQEVDPDS STEF+RE F DE SGARKALE+R RLIP SQKVLLCSAWVDSGEYLAAAA+LVAQC A VFGIACVRFEQN S
Sbjct: 243 SGKSFFSGDELTVLSVTANADGWSEAVGAALATRARAGYVFAQEVDPDSQQSTEFVREMFLDESSGARKALELRRRLIPVSQKVLLCSAWVDSGEYLAAAARLVAQCHAEVFGIACVRFEQNCS 366
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 196.1 |
| Seed ortholog evalue | 1.4e-47 |
| Seed eggNOG ortholog | 2880.D8LJY7 |
| KEGG ko | ko:K01102 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | protein serine/threonine phosphatase activity |
| EggNOG OGs | COG0631@1,KOG0700@2759 |
| EC | 3.1.3.43 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko01009 |
| Exons | 3 |
| Model size | 508 |
| Cds size | 504 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3479.9277.1 >prot_H-paniculata_contig3479.9277.1 ID=prot_H-paniculata_contig3479.9277.1|Name=mRNA_H-paniculata_contig3479.9277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
GWGSSKGSISGDVLTVMSVTANADGWSEAVGAALATRARAGYVFAQEVDP
DSPLSTEFLREEFTDERSGARKALEVRLRLIPSSQKVLLCSAWVDSGEYL
AAAAKLVAQCQAHVFGIACVRFEQNPSNSLHLVSPSFRLFLLWGHFVFQM
SVVLCASALISLLLPAPK back to topmRNA from alignment at H-paniculata_contig3479:14648..17396+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3479.9277.1 ID=mRNA_H-paniculata_contig3479.9277.1|Name=mRNA_H-paniculata_contig3479.9277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2749bp|location=Sequence derived from alignment at H-paniculata_contig3479:14648..17396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGGGCAGTAGTAAAGGGAGCATCAGCGGCGACGTGCTAACCGTCAT
GTCTGTCACTGCGAATGCGGACGGGTGGAGCGAGGCGGTCGGGGCAGCGT
TGGCTACGAGGGCGCGAGCCGGGTACGTGTTCGCGCAGGAGGTTGACCCG
GACAGTCCCCTGAGCACGGAATTTTTGAGGGAAGAGTTCACGGACGAGAG
GTCGGGGGCTCGAAAAGTGAGCAACTCATATACCATATGTATTGTAGTAT
GTATATATATAGACCACGTAAACATTTACAAGTGTACTTGCCAAACCGAC
GCCTATCTTGTCCGTGTTGGTATCTTTTAACGCTTGAGGTTACAGCTCTT
GGCTGTTAATTTGTGACGCACGCTGGAAAATTTGGTTTCGAGTCTTTTTT
ATGGTGATGATATGTGTGGCGTCCGTTCATCGTTTTTTTTGCTGCTGCCG
CGTGCTTTGTGTCGTGGGTTGGGTTTTGGTGTGTGTATTTTGAATTGTTC
TTACTCTTCAGTCGGCATCTTTACATGCCCTGTATGTTAAGTTCACGGTC
ATTCCTGGCCTTTTTTTTGCTCTGTACTTCCACGTCTGTTTGTCCGCGCC
ATTGGCGCTGCTTCTGTGTGCCCTGTGTGCAGAGCCGATTCGCCGTGCTC
GCTTCTGCACCGATGCTGGCTGCTGTGTGCTCGTGTGCAGATACTGTTGG
TGTCTGCTTCCGCGCTGGTGCTGGATGTATGCTTTAGTTTTGTTTCCAAG
CCTTTTGTAATGGGGAGGTGATCGTTTGTTCGTGCCGTGTTTTTGCTCTT
CACAGTCAGCATCTTTTTGGCACTTTATAGCCAGCCAGTCACTGCCTCTC
TCTCGATGCCCCAGTTCGGGCCTTTTATTTGCTCTGTGTGCCCGTGTCTA
TGGTTGTCCATGCTGTCCGCATCGCTGACTTTTGGGGTGAGGGTTGACTT
TTCGTGTCAGTTAGTGATATCTATTACAATGTAGAGCCTGTTCATTGTGT
TTCGTTCGCCGAGATGGGGTGTATTTATTTAAGCTCTCCCACAGGGTGGG
GGGTTTCGCTATTTTCGTGGTGCAACACCTGCTTGCTACTTTTGGCCTCT
TGTCGCTTGGATTTATCTACTCATGTGACTCTTAGCATGATCTTTATTTG
CGTGGACTACATTGTCTTCCATCCTTTTTTCCGTACTATTTGCCGCGTTT
TCTGCACCTGCGCAGTTCGCATGCCTTTCACCCTGCTACTTACCGTTTCC
TGGACGAACGTTTTGCCGTCGCTGTATATTCCGCAGACGGCCGAATAGCT
GGCTGCGGTCTTGTACAGTATGTAAAGGGAGTATATTCGGTCAGTAAACG
GTATGTCGAGCTTCTTCACAGCCAGCCGCACGCCCTATTTTGAAAGCCTT
TTATTTTTGCCTCTTTTTTTCGGAAGGGTGAGGTCAAGTTCTTGACAACA
ATAATGAAGAGCGCGGCCTACAGAGTGCACAGCAGGGTCGCGTGGTAACG
CGATAGTTTCTCTACACAGTTGCGGGAGCGTTTAGTTCGCATCTCAAGCT
GCTCATACTTGTATATCAGTTCTGTGGTACTCATGTGACTCATCGTACTG
CGATGATCCGGCGGCGCCTGCGGCTAATTGCTTCACAGTGGAGGCGATTG
CGACCTCCCTTTTCGAATGAAAAAATGTTTATATATATATATATATATAT
ATATTTTTCTCTTCCTCTCCCTCTTCGTCGCGCGCTTCTCCTCTTCCTAC
CCCATCCCACCCCCTCGCTCTATCGTCGCTTCGCATTCACTTTCACTTGT
CTCTTTCGGCTCGTGTGGCGGGTCCACCAGGCTCTCGAGGTTCGATTACG
CCTCATTCCATCTTCTCAGAAGGTTCTTCTCTGCAGCGCATGGGTGGACT
CCGGCGAGTACCTGGCAGCGGCCGCGAAGCTTGTGGCGCAGTGCCAGGCT
CACGTTTTTGGGATCGCGTGCGTGCGTTTCGAACAAAATCCGAGGTGCTT
GCCTTACAAAGAAGACAGAAGAAAAGAACACACTTTGGTTTTCTTGTGGT
GACTGACATCTTGTTGGAAATTTCGGAAAGAACAGCAGTGTGGGAGGAGG
GGAGAGCGGGGGGGTGCAATATTGTGAGAAGCATGTGGAAAATGATTTAT
TTTTTTTAGTGTAGGACAATCGCGATTAGCGCGTCGCCTCAAATGAGTAA
GGCGATGAGAAGCTCTCATGAAGATCTCCCTCTGTAGTGTGTTCTCGATA
AATTCAAGACGATTAGAGAGGTTGATTGGAAGGCGTTGTTGCTCTTTGGT
GGCAAGTCGCGAAGATGTTCCCCATGGTGTCTATTGTTGCTGCTCGGTAA
ATTCATAGACTTGTTAACGAATAAATTCGTGTCTATCCAAGACAAATAAT
GATGGTTCGAGATAGTTGCGAATGCTCCATTCGTATTTTGTCCGGGGGGT
GGAAAATTTCCCCTCTAACGTTGGTCGATTTTTTATTCTCGGTTCCTCAG
ATTTTGTGATCGTTAATTTTGTGGCAGTTGACTTTTGGTTATATGTTCAA
GGAAGCTTTCGCCCCTTTTTTTGGTTTTGTGCTTTCCGTCTGTCTGTTGT
TCCTTCTGTCTTTCCTGCTATAGCAACTCCCTACATCTTGTTTCACCCTC
ATTTCGGCTATTTCTTCTTTGGGGGCATTTTGTTTTTCAAATGTCGGTTG
TGTTATGTGCTTCGGCCCTTATCTCTCTTCTGCTGCCAGCACCCAAGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3479:14648..17396+ >mRNA_H-paniculata_contig3479.9277.1 ID=mRNA_H-paniculata_contig3479.9277.1|Name=mRNA_H-paniculata_contig3479.9277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig3479:14648..17396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGGGCAGTAGTAAAGGGAGCATCAGCGGCGACGTGCTAACCGTCAT
GTCTGTCACTGCGAATGCGGACGGGTGGAGCGAGGCGGTCGGGGCAGCGT
TGGCTACGAGGGCGCGAGCCGGGTACGTGTTCGCGCAGGAGGTTGACCCG
GACAGTCCCCTGAGCACGGAATTTTTGAGGGAAGAGTTCACGGACGAGAG
GTCGGGGGCTCGAAAAGGGTGGGGCAGTAGTAAAGGGAGCATCAGCGGCG
ACGTGCTAACCGTCATGTCTGTCACTGCGAATGCGGACGGGTGGAGCGAG
GCGGTCGGGGCAGCGTTGGCTACGAGGGCGCGAGCCGGGTACGTGTTCGC
GCAGGAGGTTGACCCGGACAGTCCCCTGAGCACGGAATTTTTGAGGGAAG
AGTTCACGGACGAGAGGTCGGGGGCTCGAAAAGCTCTCGAGGTTCGATTA
CGCCTCATTCCATCTTCTCAGAAGGTTCTTCTCTGCAGCGCATGGGTGGA
CTCCGGCGAGTACCTGGCAGCGGCCGCGAAGCTTGTGGCGCAGTGCCAGG
CTCACGTTTTTGGGATCGCGTGCGTGCGTTTCGAACAAAATCCGAGGCTC
TCGAGGTTCGATTACGCCTCATTCCATCTTCTCAGAAGGTTCTTCTCTGC
AGCGCATGGGTGGACTCCGGCGAGTACCTGGCAGCGGCCGCGAAGCTTGT
GGCGCAGTGCCAGGCTCACGTTTTTGGGATCGCGTGCGTGCGTTTCGAAC
AAAATCCGAGCAACTCCCTACATCTTGTTTCACCCTCATTTCGGCTATTT
CTTCTTTGGGGGCATTTTGTTTTTCAAATGTCGGTTGTGTTATGTGCTTC
GGCCCTTATCTCTCTTCTGCTGCCAGCACCCAAGCAACTCCCTACATCTT
GTTTCACCCTCATTTCGGCTATTTCTTCTTTGGGGGCATTTTGTTTTTCA
AATGTCGGTTGTGTTATGTGCTTCGGCCCTTATCTCTCTTCTGCTGCCAG
CACCCAAG back to top
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