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Homology
BLAST of mRNA_H-paniculata_contig3479.9276.1 vs. uniprot
Match: D8LJY7_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY7_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 2.140e-16 Identity = 59/93 (63.44%), Postives = 69/93 (74.19%), Query Frame = 1
Query: 235 PLQAHTNVRDVLAPLFCNGRSFANLIDDLSRHFKFD-SNSSQSNDDDADDDE---------KWQSTDSEAEGNISDEADDSLVQARLSAQARS 483
PLQAHTNVRDVLAPLF NGRSF++LID+LSRHF+ + SN S+ DA D+ + QSTDSEAEGN+SDE D LVQAR+SAQ RS
Sbjct: 6 PLQAHTNVRDVLAPLFSNGRSFSSLIDELSRHFRLEQSNGSRYPSYDAYGDDPVGVLEASSESQSTDSEAEGNLSDETDSRLVQARVSAQGRS 98
BLAST of mRNA_H-paniculata_contig3479.9276.1 vs. uniprot
Match: A0A6H5L3J3_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J3_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 4.250e-11 Identity = 60/125 (48.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 235 PLQAHTNVRDVLAPLFCNGRSFANLIDDLSRHFKFD-SNSSQSNDDDADDDE---------KWQSTDSEAE--------------------------------GNISDEADDSLVQARLSAQARS 483
PLQAHTNVRDVLAPLF NGRSF++LID+LSRHF+ + SN S DA D+ + QSTDSEAE GN+SDE D LVQAR+SAQARS
Sbjct: 6 PLQAHTNVRDVLAPLFSNGRSFSSLIDELSRHFRLEQSNGSGYPSYDAYGDDPVGVLEASSESQSTDSEAEVCASTKVRDENDMHEDFALYSTRNSSTTAEEIGNLSDETDSRLVQARVSAQARS 130
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 92.4 |
| Seed ortholog evalue | 3.8e-16 |
| Seed eggNOG ortholog | 2880.D8LJY7 |
| KEGG ko | ko:K01102 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | protein serine/threonine phosphatase activity |
| EggNOG OGs | COG0631@1,KOG0700@2759 |
| EC | 3.1.3.43 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko01009 |
| Exons | 2 |
| Model size | 1148 |
| Cds size | 918 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3479.9276.1 >prot_H-paniculata_contig3479.9276.1 ID=prot_H-paniculata_contig3479.9276.1|Name=mRNA_H-paniculata_contig3479.9276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
MLPLQAHTNVRDVLAPLFCNGRSFANLIDDLSRHFKFDSNSSQSNDDDAD
DDEKWQSTDSEAEGNISDEADDSLVQARLSAQARSMRGHAQPARVAAATA
AAAATNNAEATAESHPRPKEKSHGPQALAPKHATTSSHDDDNDGNCNDNA
RCVVYPVSSSTATTSPTTLRLGRRGRMMTPGVRGGEGAAAALAAASAEIS
RRIMSRKTVAAPTSASLDTRHHQHHQYRSSRRGRRVGAATAAAPAPAKSI
SARVLPTRGKAASRGSKGGRAGMDVTASTTSATSSSLHGCRPCFGGVDGS
GGGGSA back to topmRNA from alignment at H-paniculata_contig3479:12521..14626+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3479.9276.1 ID=mRNA_H-paniculata_contig3479.9276.1|Name=mRNA_H-paniculata_contig3479.9276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2106bp|location=Sequence derived from alignment at H-paniculata_contig3479:12521..14626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCACGTCCTTGTCATTCACTCTGTTCGAAAAATATGAACAAAACCGCG
AGTAGAAACGAATTCGTTTCGTTAGAAAAATGCCTCAAAAATATTGAAAC
CCAGAGTTGTTCGTATTTGTAAATTTGTACGTAGATGTCCCGTCGTGCGT
GTGAGCTGTAAGAAAGGACCCCACTGCGGTGGGTAGATACTGCTCTACAG
TCAGTGCGGTCTACAGCACAGCTTTATTATGTTGCCATTACAAGCTCATA
CGAATGTACGTGACGTGTTGGCGCCGCTGTTCTGCAACGGGAGGTCCTTC
GCGAATCTCATCGACGACCTGAGCCGGCACTTCAAATTCGATTCAAATTC
TAGTCAATCCAATGATGACGACGCAGACGACGACGAGAAGTGGCAATCCA
CGGATAGCGAAGCCGAGGTGTGTGTGCACCGCTAGTCTGTTGTATGTGTA
TACTTGCATGCATGTGGGATGTTGTATGTCATCACGAGCAATGTTTTCTT
CAGCCCAAACGGGTGGAATTGGTACACAGGTGGTACTCTCTTTAACCCTG
TTGATCACATTCTGATTGGGACTTATTCTCACTACCAACCTCCTCAACTG
AGGAGTCCCGCGCTCGTCGTTTCAACTGACCGATCTATGAATATCGTGCT
TCAGTTTTACGAAGCTAGCGGTAAGATATCGTTCTGCACTGTAACTGTAC
CGTGAATTCGCAATCTAGTGCTCGCACTCATTGACATGTTGTATGCAGGG
AGTGATGACCTTCCTTCTTCAGTTACAGCATAATATCTGCGCTTGATCTT
GACCGAAATTGTATTTGAGAGACTAGTCACAACAAGTACATCATACGTTA
CTGTTGTACAACAACCAACACTAGGTACAGCTGGTGGGCTTACTCAACGC
GAACCCACCGTGATAGAACAAGCGTCTTGTGGGGTCGACAGTCACAACCC
TTTCTTCTAACGTCACGTTACCACAAGGCGAATACCTCTTTTGTGTGAGA
TAAATTGGGGCGACCACCACCCCACCTACGCATACTGCTTCAAACCATTC
TTTTATTAATGAATTGATTCAACATCTTGCAGTGTCCTCAAAAGTTTTTT
TTTGAATTTGAAAAGAAGTATTCCTCCACTTCTTTGTTTCTTGTTTCAAG
ACAGCAAAATCCGTTCCCCGTTATCAACGTGGCTCACGCACTGCTGTAAC
TCGTTGAGCTTCCCTTTCAGAGGAAGTATCGAGTGATACCAGCTTCAGAA
CGTTCGAGACAGAGGATTTAGGCGAACCCGTTGGCACCTTACCCGCTCTA
CATTGTCTCTTCTTCTTGCCCGTTCCTCACTTACTAACAATAGATGTCCA
CACAAACCCCGACTCACGAAACCTCAGGGCAACATCAGTGACGAGGCAGA
CGACAGTCTTGTCCAGGCACGCCTGAGTGCTCAGGCTCGGTCAATGCGCG
GACATGCACAGCCGGCAAGAGTAGCCGCTGCTACAGCCGCAGCTGCAGCA
ACTAACAACGCAGAGGCGACCGCCGAAAGTCATCCTCGCCCGAAGGAAAA
GTCCCACGGGCCGCAAGCGCTCGCGCCGAAACACGCTACGACCTCTTCCC
ACGACGACGACAATGATGGCAACTGCAACGATAACGCGCGTTGCGTTGTC
TACCCAGTGTCGTCGTCAACCGCAACTACGTCGCCTACCACACTGCGGCT
AGGGAGGAGGGGGAGGATGATGACACCTGGCGTGCGGGGCGGGGAAGGAG
CTGCTGCTGCTCTTGCTGCTGCTTCAGCGGAGATAAGCCGGAGGATAATG
TCACGCAAAACGGTAGCAGCGCCAACGTCGGCCTCGCTCGACACCCGACA
TCATCAACATCACCAATATCGCAGCAGCCGCCGCGGAAGAAGAGTGGGCG
CGGCGACGGCAGCGGCTCCTGCTCCTGCCAAAAGCATCTCCGCTCGCGTT
CTTCCAACTAGGGGAAAGGCGGCGAGTCGTGGAAGCAAAGGAGGAAGGGC
CGGCATGGACGTGACCGCTTCAACCACTTCTGCTACGAGCTCCTCACTGC
ACGGCTGCCGCCCCTGTTTTGGTGGTGTCGATGGTAGCGGTGGTGGCGGG
TCGGCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3479:12521..14626+ >mRNA_H-paniculata_contig3479.9276.1 ID=mRNA_H-paniculata_contig3479.9276.1|Name=mRNA_H-paniculata_contig3479.9276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig3479:12521..14626+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCCATTACAAGCTCATACGAATGTACGTGACGTGTTGGCGCCGCT
GTTCTGCAACGGGAGGTCCTTCGCGAATCTCATCGACGACCTGAGCCGGC
ACTTCAAATTCGATTCAAATTCTAGTCAATCCAATGATGACGACGCAGAC
GACGACGAGAAGTGGCAATCCACGGATAGCGAAGCCGAGATGTTGCCATT
ACAAGCTCATACGAATGTACGTGACGTGTTGGCGCCGCTGTTCTGCAACG
GGAGGTCCTTCGCGAATCTCATCGACGACCTGAGCCGGCACTTCAAATTC
GATTCAAATTCTAGTCAATCCAATGATGACGACGCAGACGACGACGAGAA
GTGGCAATCCACGGATAGCGAAGCCGAGGGCAACATCAGTGACGAGGCAG
ACGACAGTCTTGTCCAGGCACGCCTGAGTGCTCAGGCTCGGTCAATGCGC
GGACATGCACAGCCGGCAAGAGTAGCCGCTGCTACAGCCGCAGCTGCAGC
AACTAACAACGCAGAGGCGACCGCCGAAAGTCATCCTCGCCCGAAGGAAA
AGTCCCACGGGCCGCAAGCGCTCGCGCCGAAACACGCTACGACCTCTTCC
CACGACGACGACAATGATGGCAACTGCAACGATAACGCGCGTTGCGTTGT
CTACCCAGTGTCGTCGTCAACCGCAACTACGTCGCCTACCACACTGCGGC
TAGGGAGGAGGGGGAGGATGATGACACCTGGCGTGCGGGGCGGGGAAGGA
GCTGCTGCTGCTCTTGCTGCTGCTTCAGCGGAGATAAGCCGGAGGATAAT
GTCACGCAAAACGGTAGCAGCGCCAACGTCGGCCTCGCTCGACACCCGAC
ATCATCAACATCACCAATATCGCAGCAGCCGCCGCGGAAGAAGAGTGGGC
GCGGCGACGGCAGCGGCTCCTGCTCCTGCCAAAAGCATCTCCGCTCGCGT
TCTTCCAACTAGGGGAAAGGCGGCGAGTCGTGGAAGCAAAGGAGGAAGGG
CCGGCATGGACGTGACCGCTTCAACCACTTCTGCTACGAGCTCCTCACTG
CACGGCTGCCGCCCCTGTTTTGGTGGTGTCGATGGTAGCGGTGGTGGCGG
GTCGGCGGGCAACATCAGTGACGAGGCAGACGACAGTCTTGTCCAGGCAC
GCCTGAGTGCTCAGGCTCGGTCAATGCGCGGACATGCACAGCCGGCAAGA
GTAGCCGCTGCTACAGCCGCAGCTGCAGCAACTAACAACGCAGAGGCGAC
CGCCGAAAGTCATCCTCGCCCGAAGGAAAAGTCCCACGGGCCGCAAGCGC
TCGCGCCGAAACACGCTACGACCTCTTCCCACGACGACGACAATGATGGC
AACTGCAACGATAACGCGCGTTGCGTTGTCTACCCAGTGTCGTCGTCAAC
CGCAACTACGTCGCCTACCACACTGCGGCTAGGGAGGAGGGGGAGGATGA
TGACACCTGGCGTGCGGGGCGGGGAAGGAGCTGCTGCTGCTCTTGCTGCT
GCTTCAGCGGAGATAAGCCGGAGGATAATGTCACGCAAAACGGTAGCAGC
GCCAACGTCGGCCTCGCTCGACACCCGACATCATCAACATCACCAATATC
GCAGCAGCCGCCGCGGAAGAAGAGTGGGCGCGGCGACGGCAGCGGCTCCT
GCTCCTGCCAAAAGCATCTCCGCTCGCGTTCTTCCAACTAGGGGAAAGGC
GGCGAGTCGTGGAAGCAAAGGAGGAAGGGCCGGCATGGACGTGACCGCTT
CAACCACTTCTGCTACGAGCTCCTCACTGCACGGCTGCCGCCCCTGTTTT
GGTGGTGTCGATGGTAGCGGTGGTGGCGGGTCGGCG back to top
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