mRNA_H-paniculata_contig3479.9275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3479.9275.1
Unique NamemRNA_H-paniculata_contig3479.9275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 1.500e-100
Identity = 181/305 (59.34%), Postives = 220/305 (72.13%), Query Frame = 2
Query:  113 VVARLSVGGAEAVRGGGGSGKGNGAM-TPETPGPPRQKDGSRFVQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKGLPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGS--LAPLNPSKLEPLPGTAKY--MQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
            VVARLSVG           GK + A+ T  TPGPPR++ G RFV ISEV  EVS TPGVRRSGRQRVAP+KFW+GDNIQY VDEKGL VA G+VKGP+     S  R RGG+G    R   +    ++PL+PSK+  +    K+  M+++++C+VWDEE A    R VVM  SNL  H + AT  R PGK+K+G AAQAF V  EVGISEW++G L+LPP AIKDSEHVA STQIY+V  GQP+ALE+AIA+P+ +     FD +TAQRFLLSPGDHFYVPVNNVYRLENHS +A ++IYWTI+K
Sbjct:  615 VVARLSVG----------RGKRSTAVATTTTPGPPRREWGPRFVDISEVA-EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSTSRKRGGEGKKRRRPPAVKDEHMSPLSPSKVSEMRKNKKFKLMEKDQKCLVWDEETAAFKTRQVVMSSSNLVSHDVTATHQRAPGKEKIGQAAQAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTKRTTFDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIK 908          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 2.400e-96
Identity = 164/271 (60.52%), Postives = 203/271 (74.91%), Query Frame = 2
Query:  215 RQKDGSRFVQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKGLPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGS--LAPLNPSKLEPLPGTAKY--MQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILKV 1015
            R++ GSRFV ISEV  EVS TPGVRRSGRQRVAP+KFW+GDNIQY VDEKGL VA G+VKGP+     S  R RG +G    R   +    ++PL+PSK+  +  + K+  M+++++C+VWDEE A    R VVM  SNL  H + AT  R PGK+K+G AAQAF V  EVGISEW++G L+LPP AIKDSEHVA STQIY+V  GQP+ALE+AIA+P+ +     FD +TAQRFLLSPGDHFYVPVNNVYRLENHS +A ++IYWTI+K+
Sbjct:  542 RREGGSRFVDISEVA-EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSPSRKRGSEGKKRRRPPAVKDEHMSPLSPSKVSEMRKSKKFKLMEKDQKCLVWDEETAAFKTRQVVMSSSNLVSHDVTATHQRAPGKEKIGQAAQAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTKRTTFDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIKI 811          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S2FXX0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXX0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.230e-43
Identity = 98/259 (37.84%), Postives = 153/259 (59.07%), Query Frame = 2
Query:  269 SKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKGL----PVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKS-----ICRHVVMRESNLDHHLLPATLDRPPGKDKL-GAAAQAFNVSS-EVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
            S + G RRS RQR   +++W+ + + Y   E GL    P+  G+ +   T  AP+RK+          R  +  S++   P ++  LP   ++ ++ ++  VW+E+EAK+     ICR   M+++  +   LP T DR PG++ L G AAQ F ++     I  W+SG + LPP+AIKD+E V + +Q++ V   QP + E+AIA+P ++    VF+P +AQR+LLSPGD F+V   NVYRL+NHSKK    ++WTI+K
Sbjct:    3 SDSSGARRSKRQRYPVLEYWRNERMIYERPEDGLGEVLPMVAGISERSKTPAAPTRKK----------RPRKDISMSQPVPIQVSDLPEQYEF-KDSDKGRVWNEKEAKASKMKIICRSKAMKKTERE---LPITADRDPGEEDLVGVAAQGFLMNPMSSAIPGWISGYVTLPPRAIKDAEGVGYCSQVFFVAECQPGSFEVAIAMPQDQ--QIVFEPESAQRYLLSPGDQFFVAPGNVYRLQNHSKKVDCKLFWTIIK 245          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S2SRM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRM5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 8.810e-33
Identity = 98/259 (37.84%), Postives = 133/259 (51.35%), Query Frame = 2
Query:  257 VGEVSKTPGVRRSGRQRVAPVKFWKGDNIQY--RVDE---KGLPVATGLVKGPSTTPAPSRK-RARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKD-KLGAAAQAFNVSSE-VGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTIL 1009
            VG        RRS R R  P+ +WK +   Y  R  E   + LP   G+ +   T  A +RK R R        RK   G+  P      + LP   ++ ++ E+  VW EE  +     V+ R S L+   LP T  R   +  ++GAAAQAF V S    +  W+SG + LPP AIKD E V +S+Q++ V   QP +LE+AI L  +      FD  TAQRFLLS GD FY+P  N+YRLENHS+     I+W I+
Sbjct:  204 VGVTPDDGSARRSRRVRYPPLAYWKNERYVYERRASEGLGEVLPTVAGVSERTKTPAAAARKKRPR-------PRKIDRGNALPS-----KDLPQGREF-KKHEKAKVWSEEAQRQRKMTVIARSSQLEEGELPITAKRTKDESSRVGAAAQAFKVESAGPDLPTWISGHVVLPPHAIKDPERVGNSSQVFFVADCQPKSLEVAIGLDQDRPTD--FDRATAQRFLLSSGDQFYIPPFNIYRLENHSEDQDCKIFWAII 447          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S3Q421_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q421_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.240e-32
Identity = 98/284 (34.51%), Postives = 143/284 (50.35%), Query Frame = 2
Query:  239 VQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEK---------GLPVATGLVKGPSTTPAPSRKRAR------GGDGGGG---------SRKGQMGSLAPLNPSKLEPLPGTAKYMQEE-EECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGA-AAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
            + +     + S+   VRRS R+R  PV+FWK + I Y  +            +P+  G++K     P P +KR +      G D  G          + K + G     + +KL       KY  E+ E   +W E E K+    ++     +  H LP    R  G+  + A A+Q FNV+++  +  ++SG ++LPPQAIKD E V    QI+ VG  Q  +LELAIA P  E N   FD  TA+RFLLS GD F++P  NVYRL+NHSK+    + WTI++
Sbjct:  674 IPVGSFQNDHSEDGNVRRSRRRRFPPVQFWKNEKIIYEANNATGRMAKIYGDMPMVKGILK---AEPTPYKKRKQRPLVHDGDDSDGADVSITAAKTNAKSKSGEEKDFDSTKLR-----KKYNYEDGESAPIWLEAEGKAGIEKILCYRKKIKLHDLPLVKKRKRGESGIVAKASQTFNVAAQGNMPGFISGCMELPPQAIKDEESVGPCVQIFNVGNCQAKSLELAIADP--EENEGNFDAATARRFLLSSGDVFHIPAGNVYRLQNHSKQIECNLSWTIMR 947          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S2B2G0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2G0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.070e-28
Identity = 69/171 (40.35%), Postives = 99/171 (57.89%), Query Frame = 2
Query:  560 VWDEEEAKSICRHVVMRESNLDHHL--LPATLDRPPGKD-KLGAAAQAFNVSS--EVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNE---------------VNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
            VW E+E  +    +V R+ ++  +   LP T DR   +  ++G AAQ+F + S     I  W+SG + LPP AIKD+E V   +Q++ V   QP + EL+IA P +E               +   +F+P TAQRF+LS GDHF++P  NVYRLENHSK  +  +YWTI+K
Sbjct:   10 VWSEKEQGTKKMKIVNRQESMQKNTRDLPITTDRAEHEGVEVGQAAQSFLMDSIPSQRIPGWISGFVTLPPLAIKDAEGVGFCSQVFFVAECQPESFELSIADPASEHQVTRRQQLGAESGEIAEIIFEPATAQRFILSAGDHFFIPPGNVYRLENHSKHKTCKLYWTIIK 180          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: K3WQF2_GLOUD (CENP-C_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQF2_GLOUD)

HSP 1 Score: 125 bits (313), Expect = 1.710e-27
Identity = 90/286 (31.47%), Postives = 142/286 (49.65%), Query Frame = 2
Query:  197 ETPGPPRQKDGSRFVQ-----ISEVVGEVSK--TPGVRRSGRQRVAPVKFWKGDNIQYRVDEKG----LPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILKVPL 1021
            +T GP R+K  SR  +       +++ +       GVRRS R+R  P+ ++KG++  Y   E G    +P   G+ +  +TTP  + ++          RK        + P     LP   KY ++ E   ++D         +V+ R S ++H  LP+     PG      A Q+FN+ +    S W+ G L LPP A K++E V  + Q++ V   QP A+E++    T+E     FD   A RFLL+PGD FYVP  N Y L+N+S+KA+  +++TI+K  L
Sbjct:  337 DTEGPRRKKKKSRARERDLSYAQDILDDAGNDNASGVRRSKRKRFKPLAWYKGEHYVYERRESGVGLVIPTVAGIERVGTTTPTKTARKYTKKSHSNPQRKA-------IKPFPKSSLPKGLKY-EDGEWADLYDTSAGCINKMNVICRASEIEHRELPSVDGEVPG-----FAGQSFNLRNSHPFSRWICGRLGLPPGAAKEAESVGEAVQVFYVTNCQPGAVEVSFGPVTDEY----FDTTKATRFLLNPGDEFYVPSRNAYYLKNYSEKATCDLHFTIMKPDL 605          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A835YQ32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ32_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.190e-27
Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 2
Query:  536 MQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNV--SSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIA-LPT-NEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILKVP 1018
            M+ EE C+V+D +      + ++ R  +L +  L    D          AA+AF+V  ++  G+S W SG L LPP+ +K +E V   TQ+Y V + +P +LELAIA +P  ++  ++ FD  TAQR+LLSPGDHFYVP  NVYRLENH+  A + I W IL  P
Sbjct:    1 MRMEESCLVYDVDARGEEQKQIIFRNDSLVYQSLHLA-DGQAENSAPCQAARAFSVRGAAACGLSSWSSGALTLPPRGLKAAERVDDHTQLYWVTSCRPYSLELAIAKIPEGSDRPADAFDDATAQRYLLSPGDHFYVPPRNVYRLENHAPDADAQICWAILNPP 164          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A6G0X555_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X555_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.270e-27
Identity = 85/252 (33.73%), Postives = 127/252 (50.40%), Query Frame = 2
Query:  269 SKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKG----LPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
            S + GVRRS R+R+ P++++K +   Y   + G    LP  + + +  ++TP    KR          ++G+  S     P  L  LP    Y+  +   + WDE   KS    ++ R    +   LP   D P      G A Q FN+     +  W+SG L LPPQA+K  E V + TQ+++V + QP +LE+A   P+      V+D  TAQR+LLSPGD ++VP  N Y L NHSK   + + + ILK
Sbjct:  572 SDSGGVRRSKRRRIKPLEWYKCERPVYERRQSGVGLILPTISHIERASTSTPV---KRQH--------KQGKSKSA----PFPLNELPSEFSYLATDSGEL-WDELTNKSSKMRMICRNKASEIFALPGVDDYP-----CGFAGQTFNLPGGPALPTWISGRLVLPPQAVKQPESVGNCTQVFVVMSCQPGSLEVAYGHPSE----GVYDEETAQRYLLSPGDEYFVPPENAYFLRNHSKTVEAEVRFMILK 798          
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A1V9YEP0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEP0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.420e-27
Identity = 88/248 (35.48%), Postives = 122/248 (49.19%), Query Frame = 2
Query:  281 GVRRSGRQRVAPVKFWKGDNIQYRVDEKGL----PVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
            G RRS R+R+ P+ ++K +   Y   + GL    P  + + +  +T+P    K A      G  RK   G      P+   P   T +     E   +WDE  A +    ++ R    D   LPAT   PPG      A Q FNV     +  W+SG + LPPQA+K  E V   TQ+++V A QPNALE++   P++    +VF   TAQR+ L PGD FYVP NN Y L NHS    + + + ILK
Sbjct:  373 GPRRSKRRRIQPLAWYKCERPVYERRDNGLGLILPTISHIERAGTTSPV---KNA------GAPRK--RGPRHAAFPAANLPAEYTYRTTDSGE---LWDEAAATAKTVKMIGRYGTSDTFALPATDGHPPG-----FAGQTFNVVGNASVPTWISGRVLLPPQALKAPESVGACTQVFVVVACQPNALEVSFGHPSD----SVFQDTTAQRYTLGPGDEFYVPANNAYFLRNHSPTVEAELRFMILK 597          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZX0_9PHAE1.500e-10059.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ6_ECTSI2.400e-9660.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FXX0_9STRA6.230e-4337.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SRM5_9STRA8.810e-3337.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3Q421_9STRA1.240e-3234.51Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2B2G0_9STRA8.070e-2840.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3WQF2_GLOUD1.710e-2731.47CENP-C_C domain-containing protein n=1 Tax=Globisp... [more]
A0A835YQ32_9STRA2.190e-2742.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0X555_9STRA3.270e-2733.73Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YEP0_9STRA5.420e-2735.48Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3479contigH-paniculata_contig3479:5702..9518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.3
Seed ortholog evalue1.9e-84
Seed eggNOG ortholog2880.D8LJZ6
KEGG koko:K11497
Hectar predicted targeting categoryother localisation
EggNOG OGs29KWX@1,2RU66@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons6
Model size1224
Cds size897
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3479.9275.1prot_H-paniculata_contig3479.9275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3479 5889..9378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.7093644-UTR-H-paniculata_contig3479:5701..58881622930074.7093644-UTR-H-paniculata_contig3479:5701..5888Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3479 5702..5888 +
1691481136.2681515-UTR-H-paniculata_contig3479:5701..58881691481136.2681515-UTR-H-paniculata_contig3479:5701..5888Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3479 5702..5888 +
1622930074.8139884-UTR-H-paniculata_contig3479:9378..95181622930074.8139884-UTR-H-paniculata_contig3479:9378..9518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3479 9379..9518 +
1691481136.3452003-UTR-H-paniculata_contig3479:9378..95181691481136.3452003-UTR-H-paniculata_contig3479:9378..9518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3479 9379..9518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.7231572-CDS-H-paniculata_contig3479:5888..59641622930074.7231572-CDS-H-paniculata_contig3479:5888..5964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 5889..5964 +
1691481136.2782671-CDS-H-paniculata_contig3479:5888..59641691481136.2782671-CDS-H-paniculata_contig3479:5888..5964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 5889..5964 +
1622930074.7344558-CDS-H-paniculata_contig3479:6743..69031622930074.7344558-CDS-H-paniculata_contig3479:6743..6903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 6744..6903 +
1691481136.288121-CDS-H-paniculata_contig3479:6743..69031691481136.288121-CDS-H-paniculata_contig3479:6743..6903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 6744..6903 +
1622930074.751296-CDS-H-paniculata_contig3479:7309..74821622930074.751296-CDS-H-paniculata_contig3479:7309..7482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 7310..7482 +
1691481136.2982717-CDS-H-paniculata_contig3479:7309..74821691481136.2982717-CDS-H-paniculata_contig3479:7309..7482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 7310..7482 +
1622930074.7690644-CDS-H-paniculata_contig3479:8075..81701622930074.7690644-CDS-H-paniculata_contig3479:8075..8170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 8076..8170 +
1691481136.30834-CDS-H-paniculata_contig3479:8075..81701691481136.30834-CDS-H-paniculata_contig3479:8075..8170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 8076..8170 +
1622930074.785051-CDS-H-paniculata_contig3479:8666..88401622930074.785051-CDS-H-paniculata_contig3479:8666..8840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 8667..8840 +
1691481136.3183088-CDS-H-paniculata_contig3479:8666..88401691481136.3183088-CDS-H-paniculata_contig3479:8666..8840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 8667..8840 +
1622930074.8028657-CDS-H-paniculata_contig3479:9159..93781622930074.8028657-CDS-H-paniculata_contig3479:9159..9378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 9160..9378 +
1691481136.328514-CDS-H-paniculata_contig3479:9159..93781691481136.328514-CDS-H-paniculata_contig3479:9159..9378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3479 9160..9378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3479.9275.1

>prot_H-paniculata_contig3479.9275.1 ID=prot_H-paniculata_contig3479.9275.1|Name=mRNA_H-paniculata_contig3479.9275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
MTPETPGPPRQKDGSRFVQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGD
NIQYRVDEKGLPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLA
PLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLL
PATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVA
HSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYV
PVNNVYRLENHSKKASSIIYWTILKVPLSLRSLCRVRSVEKTQQKSVE*
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mRNA from alignment at H-paniculata_contig3479:5702..9518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3479.9275.1 ID=mRNA_H-paniculata_contig3479.9275.1|Name=mRNA_H-paniculata_contig3479.9275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3817bp|location=Sequence derived from alignment at H-paniculata_contig3479:5702..9518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAGACCCACTTCTTCTTCGTCTACTTCTTCAAGGGACAGAAAAAAAA AGGACAAGGCAGTCAAGGAAACAGGAGGTGTGGCCGAGGTGCACAAGAAG AAAAGGTCGCATGTCGTAGCCCGGTTGTCCGTTGGAGGGGCTGAGGCTGT GCGCGGCGGTGGCGGCAGCGGGAAGGGGAATGGCGCGATGACACCTGAGA CACCGGGGCCGCCCCGACAGAAGGATGGTTCACGGTTTGTGCAGATATCG GAAGTGGTGGGAGGCGAGTAAGAGGGGAGGAGTGGCACAGGGACAAATAA AATATCATGTATGCCAATATTGGCTTTGGTCACCTTGTCGCATGTCTCTT GGTATGTATACCAGACTTGACTACAGATAGGATTGAATTCTTGGAGTTTT TTGGTTCGAAGAGATGCTTGAAAATATTGTAATTGGATGATGACGTTAGT AAGTAGCCTGTGAGCAATTTGGTGTGTATACTTCGATATTTATTTTTCTA TTTTAGGTAGATAATTATGTACTCGAAATCTGTTGGCGGTGTGATGTGTA AAGCGTGAAGTGACTTGTTCCAGAAAAAAAAAGACGGACTTGCTGTTTTG ACATATATTGTCTGCCTCTTTTTTAACTCCATGTTTTGTGTTGGTTCTTA GTATGTTTTAGTTCGTCCGATGTGAATAAGTGTACATCACCTCCCCAGAC GAATTTGAATACGAATAGTTGAATCGTTCGCAACGAGGATTAAAATAGTA TTCCCCTGAAGGTTCAGAATGCGAGGGCATTTAAATAAACCGCCCACCCC CTGTTCATTTGTGTTACCCTCTTTCGGAGCAATCGTCAACGGTCAGGGAC ACATGGAATGAACAGTGAAGGTGGTCATGCTGAACTTTCACGGGAATCCA TTTTCAACTTCGTCGCGAATGCTCGATGTATTCGTATCAGTCGGGGGAGG CGAAATATTTATTCAAAACTACTCAAAATAAACAGCATCGTCGCCTCTCT TCATCGGCTGTCACATTGTTATTTGAATGATGGCAAGGGCAGAAGTTAGC AAGACTCCCGGGGTCAGACGGTCCGGAAGGCAGCGCGTAGCTCCCGTCAA GTTTTGGAAGGGGGACAATATCCAGTACCGCGTGGATGAGAAAGGGTTGC CAGTGGCCACGGGCCTCGTCAAGGGGCCTTCGACCACCCCGGCTCCATCG AGGTACTAGTAGGTATCTTGTCCCTATTGAGTAAACACCGTTTGTACTAT CTTGGGGTTGATGGGTGAATGGGTGAGCGAGTGGGTGGGTGACCCTGTCT ACATAATTTGTACTAGTTACGGTGAAAGCGGTTATGGCCATCGTTTCGGA ATATTTATTTTTGCTGTAGTCAAGTACTTAGTCTGTAACTTAAAAAAATA TCAAGTTGGCGAGAAAGACTGGCAGAATGAGCCAGGGCGACAGACAAAAG AAAGAGAGAGAGCCACCCACAGAAAGACGAACAAAGGAAGAGCGAGAGAG ACAGACAGGGAGATATAGATGGTACAAGACTGAGCAGCTGACCGCCTGTT GTGCCGCTTATTGACCCGAATGATCCCAATACCGGCCAAACAAACGAACA AAAAATAGGAAGCGTGCTCGAGGTGGTGACGGCGGCGGCGGCAGCCGGAA GGGGCAAATGGGGTCGTTGGCGCCACTCAACCCGTCAAAACTTGAACCCC TTCCTGGGACGGCGAAGTACATGCAAGAGGAGGAGGAGTGCATCGTGTGG GACGAGGAAGAGGCAAAGAGCATCTGCAGGCGTGAGTTATTTTGTGTGTG TGTTTGTGTTGGGCCTACCGTCGCGCCCCAAATATGTTCTGATGGGCTAA AGTTCAGTGTCTATGTACGTACCATGTCCGATAGTTTACGATAGGTCGGT GCGTGGGCGGGGGGGTGCCCTGGTCCTCTCGTTGTGATTATGTATGTACA TACATATACATACAATATGTGAGTGTTCCTATGATGATACTGTAGGGTGA CAGTGATGGTCGTATCGCAACGGTGTCGATACTTGATCCAATTTTTTTAT TGGGTGTCACGTGACGCATGGAACGTTTTGTTTTTTACCTTGCCAGCGCA GCGAGTCGTTGTGCCTGTGTCATGGATTTCGGATAGTGACTAAATAGATA CGCGGGCAACACAACACAAAACCGAGGTCGTTCCCCCCATTCCTCTTCCT TTTCAGTGACTAAACACAGCTTTGAAGTACAGGCTGCACACCTTCAGCAT GCCAAATATAGATATGCTGAAATTACTACACAAGTCACTAGACTATTGAC TTGCCTTCCCGCCCCCCTCCCACCTTCCCGCCCTCTATCGTGTTTCACGT TTCACGCCCGACAACGAAAATCAGACGTGGTTATGCGAGAGAGCAACTTG GATCACCACCTTCTCCCGGCGACGCTCGACAGACCTCCAGGAAAGGATAA GCTCGGCGCAGCGGCTCAGGCAAGAGGGAGTACTGTTGCTTGTAATTCGC TGCTTAGGACAGGACAAATGGGTGTTGGTGTTCTGTGTATTCAAGAAGCA GATAACGCAAAATGATTCTGGCTACATCTAGGGTATCCATGGCGCTTCTC CTGTTTTGCTGTTACCGTAACTTGTAATACTGGTTCTTGTTGATCTGTTA TCCGGTTATTTAGTGTCTCTGCAGATGTACGCACAACCTCCTCCTTCCCC CCGCCCTGCTTTTAGCTTTTTGATGTTTTTTTTTCTGTCCCATCGTATTG TAATATGTAAATCTCACTATACAGTGTCACCTGCCGCCGTAGTTACTTAC TCTTGTAGCGTCCATCCCAACACAGCGCAACACAACACAACACTAGACAC TGATGCCGACTCTTTCAATCTTTTTGTATATATGTAACGAAAAAAGAAAA TGCCCTGATATGAGCAAATCAGGTCAAGTGAAGTCAAAGCATCTGGCTTG CGTCTCTTGCTTTAGGCGTTCAATGTGTCGTCAGAGGTGGGCATATCAGA GTGGGTGTCCGGAACGCTGCAACTCCCCCCTCAAGCGATCAAGGACTCGG AGCACGTCGCCCACAGCACGCAGATATACATAGTCGGGGCGGGGCAACCG AACGCCCTGGAGCTCGCCATCGCCTTGCCGACCAATGAGGCAAGTGCAAA ACTCCTTGGTGGTGGTAATGGTGCCTTCGTAAAACAATTGCGATACATCA ACGTGATTGACGTCATATATATTTTTTGTCGGTATTGTTATTGATGCTAC TACTGCTGGTGATGCTGCATCTAATCATGCTGCCATTATGGTGTTCGTGT TCCCGTTGGGTGTTTGATATGGTCGAGCGTGCTGTTATGCCCGGATGCTT CAAGGACATAATTGCTTTCATTATCTCCTAATTTCACCCGCCCCCTCACC CACACCAACCCATCCACCCACCCCATCCCTCCCGTTATGTCGCCTCTACC CCCATCAGGTCAATAGCAATGTCTTCGACCCTCGAACGGCCCAGCGCTTC CTGCTTTCGCCAGGAGACCACTTCTACGTCCCCGTGAACAACGTGTATCG CCTGGAGAACCACTCCAAGAAGGCGTCTTCTATCATCTACTGGACGATTC TCAAGGTACCACTATCCCTTCGTTCGTTATGCCGGGTTCGGAGTGTTGAA AAAACACAGCAGAAGTCCGTTGAATAAACAAGTAGATAGAAGCCAGCAGG ACTGAAGGGCATGAACCACGTGTTGGACGATACTCTAGTATCCACCAAAA TACGTACCTATACGTACCTGGTGTATAACGGGTTGATTTTTACCGTATCA AGTATTTATTGGTATTA
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Coding sequence (CDS) from alignment at H-paniculata_contig3479:5702..9518+

>mRNA_H-paniculata_contig3479.9275.1 ID=mRNA_H-paniculata_contig3479.9275.1|Name=mRNA_H-paniculata_contig3479.9275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig3479:5702..9518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACCTGAGACACCGGGGCCGCCCCGACAGAAGGATGGTTCACGGTT
TGTGCAGATATCGGAAGTGGTGGGAGATGACACCTGAGACACCGGGGCCG
CCCCGACAGAAGGATGGTTCACGGTTTGTGCAGATATCGGAAGTGGTGGG
AGAAGTTAGCAAGACTCCCGGGGTCAGACGGTCCGGAAGGCAGCGCGTAG
CTCCCGTCAAGTTTTGGAAGGGGGACAATATCCAGTACCGCGTGGATGAG
AAAGGGTTGCCAGTGGCCACGGGCCTCGTCAAGGGGCCTTCGACCACCCC
GGCTCCATCGAGAAGTTAGCAAGACTCCCGGGGTCAGACGGTCCGGAAGG
CAGCGCGTAGCTCCCGTCAAGTTTTGGAAGGGGGACAATATCCAGTACCG
CGTGGATGAGAAAGGGTTGCCAGTGGCCACGGGCCTCGTCAAGGGGCCTT
CGACCACCCCGGCTCCATCGAGGAAGCGTGCTCGAGGTGGTGACGGCGGC
GGCGGCAGCCGGAAGGGGCAAATGGGGTCGTTGGCGCCACTCAACCCGTC
AAAACTTGAACCCCTTCCTGGGACGGCGAAGTACATGCAAGAGGAGGAGG
AGTGCATCGTGTGGGACGAGGAAGAGGCAAAGAGCATCTGCAGGCGAAGC
GTGCTCGAGGTGGTGACGGCGGCGGCGGCAGCCGGAAGGGGCAAATGGGG
TCGTTGGCGCCACTCAACCCGTCAAAACTTGAACCCCTTCCTGGGACGGC
GAAGTACATGCAAGAGGAGGAGGAGTGCATCGTGTGGGACGAGGAAGAGG
CAAAGAGCATCTGCAGGCACGTGGTTATGCGAGAGAGCAACTTGGATCAC
CACCTTCTCCCGGCGACGCTCGACAGACCTCCAGGAAAGGATAAGCTCGG
CGCAGCGGCTCAGACGTGGTTATGCGAGAGAGCAACTTGGATCACCACCT
TCTCCCGGCGACGCTCGACAGACCTCCAGGAAAGGATAAGCTCGGCGCAG
CGGCTCAGGCGTTCAATGTGTCGTCAGAGGTGGGCATATCAGAGTGGGTG
TCCGGAACGCTGCAACTCCCCCCTCAAGCGATCAAGGACTCGGAGCACGT
CGCCCACAGCACGCAGATATACATAGTCGGGGCGGGGCAACCGAACGCCC
TGGAGCTCGCCATCGCCTTGCCGACCAATGAGGCGTTCAATGTGTCGTCA
GAGGTGGGCATATCAGAGTGGGTGTCCGGAACGCTGCAACTCCCCCCTCA
AGCGATCAAGGACTCGGAGCACGTCGCCCACAGCACGCAGATATACATAG
TCGGGGCGGGGCAACCGAACGCCCTGGAGCTCGCCATCGCCTTGCCGACC
AATGAGGTCAATAGCAATGTCTTCGACCCTCGAACGGCCCAGCGCTTCCT
GCTTTCGCCAGGAGACCACTTCTACGTCCCCGTGAACAACGTGTATCGCC
TGGAGAACCACTCCAAGAAGGCGTCTTCTATCATCTACTGGACGATTCTC
AAGGTACCACTATCCCTTCGTTCGTTATGCCGGGTTCGGAGTGTTGAAAA
AACACAGCAGAAGTCCGTTGAATAAGTCAATAGCAATGTCTTCGACCCTC
GAACGGCCCAGCGCTTCCTGCTTTCGCCAGGAGACCACTTCTACGTCCCC
GTGAACAACGTGTATCGCCTGGAGAACCACTCCAAGAAGGCGTCTTCTAT
CATCTACTGGACGATTCTCAAGGTACCACTATCCCTTCGTTCGTTATGCC
GGGTTCGGAGTGTTGAAAAAACACAGCAGAAGTCCGTTGAATAA
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