mRNA_H-paniculata_contig3479.9275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE) HSP 1 Score: 328 bits (841), Expect = 1.500e-100 Identity = 181/305 (59.34%), Postives = 220/305 (72.13%), Query Frame = 2
Query: 113 VVARLSVGGAEAVRGGGGSGKGNGAM-TPETPGPPRQKDGSRFVQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKGLPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGS--LAPLNPSKLEPLPGTAKY--MQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
VVARLSVG GK + A+ T TPGPPR++ G RFV ISEV EVS TPGVRRSGRQRVAP+KFW+GDNIQY VDEKGL VA G+VKGP+ S R RGG+G R + ++PL+PSK+ + K+ M+++++C+VWDEE A R VVM SNL H + AT R PGK+K+G AAQAF V EVGISEW++G L+LPP AIKDSEHVA STQIY+V GQP+ALE+AIA+P+ + FD +TAQRFLLSPGDHFYVPVNNVYRLENHS +A ++IYWTI+K
Sbjct: 615 VVARLSVG----------RGKRSTAVATTTTPGPPRREWGPRFVDISEVA-EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSTSRKRGGEGKKRRRPPAVKDEHMSPLSPSKVSEMRKNKKFKLMEKDQKCLVWDEETAAFKTRQVVMSSSNLVSHDVTATHQRAPGKEKIGQAAQAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTKRTTFDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIK 908
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI) HSP 1 Score: 316 bits (809), Expect = 2.400e-96 Identity = 164/271 (60.52%), Postives = 203/271 (74.91%), Query Frame = 2
Query: 215 RQKDGSRFVQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKGLPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGS--LAPLNPSKLEPLPGTAKY--MQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILKV 1015
R++ GSRFV ISEV EVS TPGVRRSGRQRVAP+KFW+GDNIQY VDEKGL VA G+VKGP+ S R RG +G R + ++PL+PSK+ + + K+ M+++++C+VWDEE A R VVM SNL H + AT R PGK+K+G AAQAF V EVGISEW++G L+LPP AIKDSEHVA STQIY+V GQP+ALE+AIA+P+ + FD +TAQRFLLSPGDHFYVPVNNVYRLENHS +A ++IYWTI+K+
Sbjct: 542 RREGGSRFVDISEVA-EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSPSRKRGSEGKKRRRPPAVKDEHMSPLSPSKVSEMRKSKKFKLMEKDQKCLVWDEETAAFKTRQVVMSSSNLVSHDVTATHQRAPGKEKIGQAAQAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTKRTTFDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIKI 811
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S2FXX0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXX0_9STRA) HSP 1 Score: 160 bits (405), Expect = 6.230e-43 Identity = 98/259 (37.84%), Postives = 153/259 (59.07%), Query Frame = 2
Query: 269 SKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKGL----PVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKS-----ICRHVVMRESNLDHHLLPATLDRPPGKDKL-GAAAQAFNVSS-EVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
S + G RRS RQR +++W+ + + Y E GL P+ G+ + T AP+RK+ R + S++ P ++ LP ++ ++ ++ VW+E+EAK+ ICR M+++ + LP T DR PG++ L G AAQ F ++ I W+SG + LPP+AIKD+E V + +Q++ V QP + E+AIA+P ++ VF+P +AQR+LLSPGD F+V NVYRL+NHSKK ++WTI+K
Sbjct: 3 SDSSGARRSKRQRYPVLEYWRNERMIYERPEDGLGEVLPMVAGISERSKTPAAPTRKK----------RPRKDISMSQPVPIQVSDLPEQYEF-KDSDKGRVWNEKEAKASKMKIICRSKAMKKTERE---LPITADRDPGEEDLVGVAAQGFLMNPMSSAIPGWISGYVTLPPRAIKDAEGVGYCSQVFFVAECQPGSFEVAIAMPQDQ--QIVFEPESAQRYLLSPGDQFFVAPGNVYRLQNHSKKVDCKLFWTIIK 245
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S2SRM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRM5_9STRA) HSP 1 Score: 138 bits (347), Expect = 8.810e-33 Identity = 98/259 (37.84%), Postives = 133/259 (51.35%), Query Frame = 2
Query: 257 VGEVSKTPGVRRSGRQRVAPVKFWKGDNIQY--RVDE---KGLPVATGLVKGPSTTPAPSRK-RARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKD-KLGAAAQAFNVSSE-VGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTIL 1009
VG RRS R R P+ +WK + Y R E + LP G+ + T A +RK R R RK G+ P + LP ++ ++ E+ VW EE + V+ R S L+ LP T R + ++GAAAQAF V S + W+SG + LPP AIKD E V +S+Q++ V QP +LE+AI L + FD TAQRFLLS GD FY+P N+YRLENHS+ I+W I+
Sbjct: 204 VGVTPDDGSARRSRRVRYPPLAYWKNERYVYERRASEGLGEVLPTVAGVSERTKTPAAAARKKRPR-------PRKIDRGNALPS-----KDLPQGREF-KKHEKAKVWSEEAQRQRKMTVIARSSQLEEGELPITAKRTKDESSRVGAAAQAFKVESAGPDLPTWISGHVVLPPHAIKDPERVGNSSQVFFVADCQPKSLEVAIGLDQDRPTD--FDRATAQRFLLSSGDQFYIPPFNIYRLENHSEDQDCKIFWAII 447
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S3Q421_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q421_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.240e-32 Identity = 98/284 (34.51%), Postives = 143/284 (50.35%), Query Frame = 2
Query: 239 VQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEK---------GLPVATGLVKGPSTTPAPSRKRAR------GGDGGGG---------SRKGQMGSLAPLNPSKLEPLPGTAKYMQEE-EECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGA-AAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
+ + + S+ VRRS R+R PV+FWK + I Y + +P+ G++K P P +KR + G D G + K + G + +KL KY E+ E +W E E K+ ++ + H LP R G+ + A A+Q FNV+++ + ++SG ++LPPQAIKD E V QI+ VG Q +LELAIA P E N FD TA+RFLLS GD F++P NVYRL+NHSK+ + WTI++
Sbjct: 674 IPVGSFQNDHSEDGNVRRSRRRRFPPVQFWKNEKIIYEANNATGRMAKIYGDMPMVKGILK---AEPTPYKKRKQRPLVHDGDDSDGADVSITAAKTNAKSKSGEEKDFDSTKLR-----KKYNYEDGESAPIWLEAEGKAGIEKILCYRKKIKLHDLPLVKKRKRGESGIVAKASQTFNVAAQGNMPGFISGCMELPPQAIKDEESVGPCVQIFNVGNCQAKSLELAIADP--EENEGNFDAATARRFLLSSGDVFHIPAGNVYRLQNHSKQIECNLSWTIMR 947
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A7S2B2G0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2G0_9STRA) HSP 1 Score: 119 bits (297), Expect = 8.070e-28 Identity = 69/171 (40.35%), Postives = 99/171 (57.89%), Query Frame = 2
Query: 560 VWDEEEAKSICRHVVMRESNLDHHL--LPATLDRPPGKD-KLGAAAQAFNVSS--EVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNE---------------VNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
VW E+E + +V R+ ++ + LP T DR + ++G AAQ+F + S I W+SG + LPP AIKD+E V +Q++ V QP + EL+IA P +E + +F+P TAQRF+LS GDHF++P NVYRLENHSK + +YWTI+K
Sbjct: 10 VWSEKEQGTKKMKIVNRQESMQKNTRDLPITTDRAEHEGVEVGQAAQSFLMDSIPSQRIPGWISGFVTLPPLAIKDAEGVGFCSQVFFVAECQPESFELSIADPASEHQVTRRQQLGAESGEIAEIIFEPATAQRFILSAGDHFFIPPGNVYRLENHSKHKTCKLYWTIIK 180
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: K3WQF2_GLOUD (CENP-C_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQF2_GLOUD) HSP 1 Score: 125 bits (313), Expect = 1.710e-27 Identity = 90/286 (31.47%), Postives = 142/286 (49.65%), Query Frame = 2
Query: 197 ETPGPPRQKDGSRFVQ-----ISEVVGEVSK--TPGVRRSGRQRVAPVKFWKGDNIQYRVDEKG----LPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILKVPL 1021
+T GP R+K SR + +++ + GVRRS R+R P+ ++KG++ Y E G +P G+ + +TTP + ++ RK + P LP KY ++ E ++D +V+ R S ++H LP+ PG A Q+FN+ + S W+ G L LPP A K++E V + Q++ V QP A+E++ T+E FD A RFLL+PGD FYVP N Y L+N+S+KA+ +++TI+K L
Sbjct: 337 DTEGPRRKKKKSRARERDLSYAQDILDDAGNDNASGVRRSKRKRFKPLAWYKGEHYVYERRESGVGLVIPTVAGIERVGTTTPTKTARKYTKKSHSNPQRKA-------IKPFPKSSLPKGLKY-EDGEWADLYDTSAGCINKMNVICRASEIEHRELPSVDGEVPG-----FAGQSFNLRNSHPFSRWICGRLGLPPGAAKEAESVGEAVQVFYVTNCQPGAVEVSFGPVTDEY----FDTTKATRFLLNPGDEFYVPSRNAYYLKNYSEKATCDLHFTIMKPDL 605
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A835YQ32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ32_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.190e-27 Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 2
Query: 536 MQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNV--SSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIA-LPT-NEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILKVP 1018
M+ EE C+V+D + + ++ R +L + L D AA+AF+V ++ G+S W SG L LPP+ +K +E V TQ+Y V + +P +LELAIA +P ++ ++ FD TAQR+LLSPGDHFYVP NVYRLENH+ A + I W IL P
Sbjct: 1 MRMEESCLVYDVDARGEEQKQIIFRNDSLVYQSLHLA-DGQAENSAPCQAARAFSVRGAAACGLSSWSSGALTLPPRGLKAAERVDDHTQLYWVTSCRPYSLELAIAKIPEGSDRPADAFDDATAQRYLLSPGDHFYVPPRNVYRLENHAPDADAQICWAILNPP 164
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A6G0X555_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X555_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.270e-27 Identity = 85/252 (33.73%), Postives = 127/252 (50.40%), Query Frame = 2
Query: 269 SKTPGVRRSGRQRVAPVKFWKGDNIQYRVDEKG----LPVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
S + GVRRS R+R+ P++++K + Y + G LP + + + ++TP KR ++G+ S P L LP Y+ + + WDE KS ++ R + LP D P G A Q FN+ + W+SG L LPPQA+K E V + TQ+++V + QP +LE+A P+ V+D TAQR+LLSPGD ++VP N Y L NHSK + + + ILK
Sbjct: 572 SDSGGVRRSKRRRIKPLEWYKCERPVYERRQSGVGLILPTISHIERASTSTPV---KRQH--------KQGKSKSA----PFPLNELPSEFSYLATDSGEL-WDELTNKSSKMRMICRNKASEIFALPGVDDYP-----CGFAGQTFNLPGGPALPTWISGRLVLPPQAVKQPESVGNCTQVFVVMSCQPGSLEVAYGHPSE----GVYDEETAQRYLLSPGDEYFVPPENAYFLRNHSKTVEAEVRFMILK 798
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Match: A0A1V9YEP0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEP0_9STRA) HSP 1 Score: 123 bits (309), Expect = 5.420e-27 Identity = 88/248 (35.48%), Postives = 122/248 (49.19%), Query Frame = 2
Query: 281 GVRRSGRQRVAPVKFWKGDNIQYRVDEKGL----PVATGLVKGPSTTPAPSRKRARGGDGGGGSRKGQMGSLAPLNPSKLEPLPGTAKYMQEEEECIVWDEEEAKSICRHVVMRESNLDHHLLPATLDRPPGKDKLGAAAQAFNVSSEVGISEWVSGTLQLPPQAIKDSEHVAHSTQIYIVGAGQPNALELAIALPTNEVNSNVFDPRTAQRFLLSPGDHFYVPVNNVYRLENHSKKASSIIYWTILK 1012
G RRS R+R+ P+ ++K + Y + GL P + + + +T+P K A G RK G P+ P T + E +WDE A + ++ R D LPAT PPG A Q FNV + W+SG + LPPQA+K E V TQ+++V A QPNALE++ P++ +VF TAQR+ L PGD FYVP NN Y L NHS + + + ILK
Sbjct: 373 GPRRSKRRRIQPLAWYKCERPVYERRDNGLGLILPTISHIERAGTTSPV---KNA------GAPRK--RGPRHAAFPAANLPAEYTYRTTDSGE---LWDEAAATAKTVKMIGRYGTSDTFALPATDGHPPG-----FAGQTFNVVGNASVPTWISGRVLLPPQALKAPESVGACTQVFVVVACQPNALEVSFGHPSD----SVFQDTTAQRYTLGPGDEFYVPANNAYFLRNHSPTVEAELRFMILK 597 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3479.9275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3479.9275.1 >prot_H-paniculata_contig3479.9275.1 ID=prot_H-paniculata_contig3479.9275.1|Name=mRNA_H-paniculata_contig3479.9275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp MTPETPGPPRQKDGSRFVQISEVVGEVSKTPGVRRSGRQRVAPVKFWKGDback to top mRNA from alignment at H-paniculata_contig3479:5702..9518+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3479.9275.1 ID=mRNA_H-paniculata_contig3479.9275.1|Name=mRNA_H-paniculata_contig3479.9275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3817bp|location=Sequence derived from alignment at H-paniculata_contig3479:5702..9518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3479:5702..9518+ >mRNA_H-paniculata_contig3479.9275.1 ID=mRNA_H-paniculata_contig3479.9275.1|Name=mRNA_H-paniculata_contig3479.9275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig3479:5702..9518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |