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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1872 |
| Cds size | 1860 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3479.9274.1 >prot_H-paniculata_contig3479.9274.1 ID=prot_H-paniculata_contig3479.9274.1|Name=mRNA_H-paniculata_contig3479.9274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=620bp
MSNVWRGRRTGLMINDANVTQDENGLDNIESFWDSARADADGSSTPGTAS
MGPSTPGSGRSLLASPDSAASSNWTRPGGEVLSSSGDGEDSADADGGGGE
EEDDEEGSSVARLAKRLEFLPARPTMPSPGPSRSEISTDEEIAGGERFNL
DGAAAADDNINTTTTATSTTTTTNNKNTKPTGRSSSFNTTRRTPAYGPSD
ALDAADAAAGQAEGSPAAALVSAAAAAAAAGADLVADDDRIVALASKTPS
TLGGGVRAGKSRGGQAAVPEERETPSATPAVVNSRMTWASSSGGRSGGGG
GAAAAGAAGTASDMATRSNGRYSVGSLVSQDELTDKIFTHSGKGGVSSDD
DDGGLSGGGWDDVGFGGGGDDDESDDTDSDHASSKVKSPGGKKVLSVRSP
SARKASSSRLSPSASSPPLASPPPPASPPPPASPPPPASPPPPVSPPPPA
SPPPPASLPPLASPPPPASPSPPPPAVATAKNPPSSAASSAASTSSFSRR
TRSSSGGGGEGGGGGKAKMATRGSLSSSASGSPSSQAASAGGRKSSETGK
KKGKEKVKKRRGGSVGGDVDEEEIFDRGIVGDYDDDDDDCVDDNGGGGGG
GGSSDDDSEAMSRGKRKSKG back to topmRNA from alignment at H-paniculata_contig3479:258..5582+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3479.9274.1 ID=mRNA_H-paniculata_contig3479.9274.1|Name=mRNA_H-paniculata_contig3479.9274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5325bp|location=Sequence derived from alignment at H-paniculata_contig3479:258..5582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGAGAAAGATGAGCAACGTTTGGAGGGGTAGGAGGACTGGCCTTATG
ATCAACGACGCAAACGTCACGCAGGACGAAAACGGCCTCGACAACATAGA
GTCCTTCTGGGACAGCGCGCGTGCGGGTGAGCGAAGGAGCGATTCCGTCA
TGCGACAAATATTGCTGTACATTCAGACGTATTTTCACGATAAATGAAAA
AGGTGTTTGCCACGCTTGAGTGAGATACCGCGGCAACGCGGGGTCATGAT
TTGCGAAGATGGATTGGAAGTTGGAAGTAGCGTACTCTATTTAGCAGGGC
ACTGTAGAAAAATATGGGTCGTTGAGATTTTAAAGTTTAGTGGTTTCAAG
AAAGTGAACAAAAAAAAAAAAGTCAGTTTTCTTCTATTTCTAATTTCGTT
CAGTACTTCTATCCCGTGCTTTGATTATATTGTGCATACTGTTCGTGAGT
CGATAGAATACAACCTTTATCGTACTCACTGAAACCGAACTTGGACACTT
TTCTGGCAGACTACAGAAGCGTCCAGTATGGGCACGTGAGCCGTGTTTGA
AATCTCGCAAACGACCAACAAATAATCCACCCCTGTAGCAAGCACGGGGT
ATTAGGTTAGATCGTGGCGCGAAAAAACGCAATAAAAGTCACGTGGGATA
ATCTTCAGGGTAACTGTAGTTTTGAAGCGCATGGTCAGTATAATTGCGCC
GCAAATTAGTCCTCGAGCCGAAACGCCTCCTTAAGTACACTACATGTCTA
GCCTTCTCATATTTAAAGGCACAGTACATCACACCTCAACCCCATTCCTG
TCTTTTTTGTTTCAAATCCTTTTCCCTTTCCCCCTTCCCCTGCCCCAAGC
GATTCATCATCAGAGATCGCTCTGATTGAAATGAAGCACCATCCTCTCGA
GGACACCACGGCGGCATACAAAACATGAGTACCCCTCCCTCCCCCCTAAT
CCCACCCCTAACCCCTGCACCACCCTCATGTCATCCCCAGCCATCGCCAC
CGCTAACTCTAACTCACCTGCTATTGCCATTAGATGCAGACGGGAGTTCG
ACGCCTGGAACAGCTTCGATGGGACCATCCACACCGGGTTCAGGCCGCTC
TCTGCTAGCATCGCCGGACAGCGCCGCAAGTTCGAATTGGACAAGACCAG
GGGGTGAGGTCTTGTCCAGCAGCGGCGATGGGGAGGATTCCGCTGATGCT
GACGGCGGTGGAGGAGAGGAGGAAGACGATGAGGAAGGCTCGAGTGTGGC
GCGGCTAGCCAAGCGGCTTGAGTTCCTTCCCGCAAGGGTAAGAGTATTTG
GTTGAAGGCGGGGTTGGTGGTGGTGGTGATTGTACATGGCGTGCCGCACA
GGCAGAGCTGTCAAGGGGTGTGTCTGGAGGGTAAAAATATGTCTTGCGGA
AGATTTTCTCGAAAAATACCAAAAGAGTTGCGTTATTGAAAAGAACTATT
TCGTCGACGTACAATTGTCAATAGACAGACACGCTCGTCTAGCAGTGCAG
ACTGTTCTTCGTGTTTATCGTGACGGAACGAGCGTTGTATATCTACTCTA
CTGAAATTATGCCGTGGTTTACACTGAATTTTTTCTCTATTTTGTTTTTT
TTGGCTGTTTTTCTCCTCTAGCATCACAGTCGCAATCACGAAATATATGA
GCACCTCCCTCGCCCAACCCTGATTTCTCCGTCTTTCCTTGCCTCTCCTC
CGACAATAGCCGACGATGCCTTCGCCTGGCCCGAGCCGGTCCGAGATTTC
CACTGACGAGGAGATCGCGGGGGGGGAAAGATTCAACCTAGACGGCGCCG
CCGCCGCCGATGACAACATCAATACCACTACCACCGCCACCTCCACCACC
ACCACTACTAACAACAAGAACACAAAACCCACCGGTCGCAGCAGCAGCTT
CAACACTACCCGCCGCACACCTGCCTATGGGCCCTCCGACGCGCTCGACG
CCGCGGACGCTGCCGCCGGGCAGGCGGAGGGCTCCCCCGCCGCCGCATTG
GTATCCGCTGCTGCTGCTGCCGCTGCTGCTGGCGCGGATCTGGTTGCCGA
CGACGACCGAATAGTGGCCCTGGCAAGCAAGACGCCGTCGACCTTGGGGG
GCGGCGTGAGGGCGGGCAAGAGTCGTGGCGGACAAGCAGCCGTGCCAGGT
AAGAGAGGTCACGGTAAAGGGGGGGGGATGTTAATGTCTTGCATGTCGGA
GCATCTCGTGCTAGTGAGTCTGGTTCACCTCTTGAGCAGTTACGACGAAA
AAATGACCCCTAGGGTATCTTCTAAGTTCCGCGAGCCCTCTCTTACTCAA
GAGTTGTCTTGATTTCTTCAATGAATTTCTTGTTGAAATATGCGCTGCTA
TGGCAACTACTGGGGTGTAGTGTTTGGTCACCGACAACCGTTTTTATTCT
GCTAGCCAGTTCATCACGCGTCCTGCCCTTATCCTCGAAAGGCTGGAATG
CTGCTGTTGCCTCAAGACATATCGCGGATATGCCAACTCAGACGCACATT
TCTCAGCCTGCTCAACAGGTGACTCAAAAAGGTTTTTCCAATTCTAAGTG
GATCGGCGAGGGAGCTGTCTTGTGCAAACTTATTCCTTTGCTCATTAACA
AAGTTCCACTCTCCCGAGGACGCGTGGTCAATGGCCTGATAACTACGGCA
AGCAAAAAATGACTATGCCTTCCCCCCGCCCCCCCCCTCCCCCCTCCCTG
CTCACCAACACTCATGATGATAACAGTAGTAGCTTCAAAGTTCATTTGAT
CATAAATAAAAAATGTGCGTGATCTTGTTGCAACAGAAGAGCGTGAGACA
CCGTCCGCTACGCCGGCTGTGGTGAATTCTCGGATGACGTGGGCGTCATC
GAGCGGTGGCCGCAGTGGCGGCGGCGGCGGTGCTGCTGCTGCTGGCGCTG
CTGGAACAGCGAGCGACATGGCGACGAGATCAAATGGGCGGTATAGCGTC
GGCAGTCTTGTGTCTCAAGATGAACTGACGGACAAGGTATGAGACGAGGG
AAGATCACATCCTTGGCAGAGAGTAGTGATAATGCAGACAATAGATGTAT
TCATTTTGGCTACTTTTTTTGTTTCTTCCTTTTTCGCGTGTTGGAGTTGG
AGAAGACAGGGGTTTTGAGGCTCTTGTATCTGTTGGGAAAATGTGTCGTC
ACAAAATGATTGTTTTGGTTTTTTTCTCAGGCCCCCTTTTTTTTACACCA
ACACCAACACCAACACCAACACCAATACCATCAGGAAAGTCGGGGGCGGT
CTTAGACGTGCCATGTGTGATTTATTCTCCAAAATACTGTACACACACAC
AGGGTGCAACGTAACAGATGTAAAATGCCACACACGTGCTAATTAGTCGT
CTGAAAAGACTGATTATGACCCCCTTAACCCTGGTTGGAAATAAGGTTCC
CTCTCTCCGCAGTCCCATTTCTATTTTACGTTTTTAGACCTTGTGTATGC
ATGGTGTCGTACGTTATAGCCGATCCCTTCTGCAGCTCGACCCCGGCCAG
TGGTAAGATTTTGGTGTTTAGGGGCACCACCGTCGTAATCAGTCGTTTCA
GATGGCTAATTAGTCGGTGGATGTGTGTAAAATGCAATATGTGGAAACAA
AAGGAACGAATGACATATCTTTCTCAAGGCCACATCACAATACTGGCAGA
AAACTTCATTTGCAATGCAATACTGCGTGCACCAATAGAGAGGACAAGGC
GTCCAAGTTTGGCTCATGTTGTTTTGTGATTTCTTTTCACTTGTTTCAAC
CCTTTCAGCGCAATTGAAGAGGCTGTTTTCGGAACAAAAAAAATGACAAA
AAAAAATGTTGAGCTCTTGAGCGCTGCAGCTGTCGTGTGCAGAACTATGG
CATTTTTTGTCTGTGCTTGCTGTATGTATTGTGTTTTTACTGGACTATCG
GTCTGAACAGCGGCGGCTCCCCCTATCCGTTATCATGTCACAGGCATCAT
TTTCCCCTCGTGTTTTTGAGGTAGGAATGAGAAAGACGTTTGACCGGAAG
CGGCGTAAGCTACAAGGGTTGACAGGTGGTTGTTTTGCCGTTTGGGATCG
CTGCAGATATTCACCCATAGCGGCAAAGGTGGCGTTTCGTCTGATGATGA
CGATGGCGGTTTAAGCGGTGGCGGGTGGGATGACGTCGGATTCGGCGGTG
GTGGTGATGATGACGAGAGCGATGACACCGATAGCGATCATGTGAGGAAC
TATTAGGAATAATTTGTTGTTGTTATTGTATTATTTATTCATGTTTTGTA
TATGGCTAGTTAAAGTCTTGACAAAAAGACCAAAACAAACCGACAGATTG
GTTGAAGTAAAAAGCAAAAGTATGATGAGCGGACCGCCGGCGGGCTGACT
GGCTGACTGACTTTGATGGCCGTATTGGACGATTCAACCACGAATCGAGT
CCCTCTCGAAACAGTTTCCATTCTCCCATCAATCGTTTTTTTTTTTTTGT
CGTAGTTTCGTACGTGAACGGGCATAGCTGTGACCTGCTAACTACAGTAT
TTAGCGAGACTGCGAGAAGACAGGAAACTAGTAGTCAATCACTTTATCCT
TTTTCGCTCAATTCCGCTCCACGCCGCGCCCCACCCCCGCCGCTGCTGCT
TGCTGCAGGCGAGCAGCAAAGTCAAATCTCCAGGCGGCAAAAAGGTGCTG
AGTGTCAGGAGTCCATCCGCTCGAAAGGCAAGTAGCAGTAGATTGTCGCC
GTCGGCCTCATCACCACCGCTGGCCTCGCCACCACCGCCGGCCTCACCAC
CACCGCCGGCCTCACCACCACCGCCAGCCTCACCACCACCGCCGGTCTCA
CCACCACCGCCGGCCTCACCACCACCGCCGGCCTCACTACCACCGCTGGC
CTCACCACCACCACCGGCCTCACCATCACCGCCCCCGCCAGCGGTGGCTA
CCGCCAAAAATCCTCCTTCCTCCGCCGCTAGCTCCGCCGCCTCTACGTCT
TCCTTCTCTCGCCGAACCCGCAGTTCTAGTGGCGGCGGAGGCGAGGGGGG
TGGAGGGGGCAAGGCGAAAATGGCGACACGGGGATCGTTGAGTTCTTCAG
CGTCTGGTTCGCCGTCATCGCAGGCGGCATCTGCTGGCGGGAGGAAAAGC
AGCGAGACGGGAAAAAAAAAGGGGAAGGAGAAAGTGAAGAAGCGACGAGG
AGGGAGCGTAGGAGGAGATGTCGACGAGGAAGAGATCTTTGACAGAGGGA
TCGTTGGTGATTACGATGATGATGATGATGATTGTGTTGATGATAATGGT
GGTGGTGGTGGTGGTGGTGGTAGTAGTGATGATGATAGTGAGGCAATGAG
CCGCGGGAAGAGGAAAAGCAAAGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3479:258..5582+ >mRNA_H-paniculata_contig3479.9274.1 ID=mRNA_H-paniculata_contig3479.9274.1|Name=mRNA_H-paniculata_contig3479.9274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3720bp|location=Sequence derived from alignment at H-paniculata_contig3479:258..5582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAACGTTTGGAGGGGTAGGAGGACTGGCCTTATGATCAACGACGC
AAACGTCACGCAGGACGAAAACGGCCTCGACAACATAGAGTCCTTCTGGG
ACAGCGCGCGTGCGGATGAGCAACGTTTGGAGGGGTAGGAGGACTGGCCT
TATGATCAACGACGCAAACGTCACGCAGGACGAAAACGGCCTCGACAACA
TAGAGTCCTTCTGGGACAGCGCGCGTGCGGATGCAGACGGGAGTTCGACG
CCTGGAACAGCTTCGATGGGACCATCCACACCGGGTTCAGGCCGCTCTCT
GCTAGCATCGCCGGACAGCGCCGCAAGTTCGAATTGGACAAGACCAGGGG
GTGAGGTCTTGTCCAGCAGCGGCGATGGGGAGGATTCCGCTGATGCTGAC
GGCGGTGGAGGAGAGGAGGAAGACGATGAGGAAGGCTCGAGTGTGGCGCG
GCTAGCCAAGCGGCTTGAGTTCCTTCCCGCAAGGATGCAGACGGGAGTTC
GACGCCTGGAACAGCTTCGATGGGACCATCCACACCGGGTTCAGGCCGCT
CTCTGCTAGCATCGCCGGACAGCGCCGCAAGTTCGAATTGGACAAGACCA
GGGGGTGAGGTCTTGTCCAGCAGCGGCGATGGGGAGGATTCCGCTGATGC
TGACGGCGGTGGAGGAGAGGAGGAAGACGATGAGGAAGGCTCGAGTGTGG
CGCGGCTAGCCAAGCGGCTTGAGTTCCTTCCCGCAAGGCCGACGATGCCT
TCGCCTGGCCCGAGCCGGTCCGAGATTTCCACTGACGAGGAGATCGCGGG
GGGGGAAAGATTCAACCTAGACGGCGCCGCCGCCGCCGATGACAACATCA
ATACCACTACCACCGCCACCTCCACCACCACCACTACTAACAACAAGAAC
ACAAAACCCACCGGTCGCAGCAGCAGCTTCAACACTACCCGCCGCACACC
TGCCTATGGGCCCTCCGACGCGCTCGACGCCGCGGACGCTGCCGCCGGGC
AGGCGGAGGGCTCCCCCGCCGCCGCATTGGTATCCGCTGCTGCTGCTGCC
GCTGCTGCTGGCGCGGATCTGGTTGCCGACGACGACCGAATAGTGGCCCT
GGCAAGCAAGACGCCGTCGACCTTGGGGGGCGGCGTGAGGGCGGGCAAGA
GTCGTGGCGGACAAGCAGCCGTGCCAGCCGACGATGCCTTCGCCTGGCCC
GAGCCGGTCCGAGATTTCCACTGACGAGGAGATCGCGGGGGGGGAAAGAT
TCAACCTAGACGGCGCCGCCGCCGCCGATGACAACATCAATACCACTACC
ACCGCCACCTCCACCACCACCACTACTAACAACAAGAACACAAAACCCAC
CGGTCGCAGCAGCAGCTTCAACACTACCCGCCGCACACCTGCCTATGGGC
CCTCCGACGCGCTCGACGCCGCGGACGCTGCCGCCGGGCAGGCGGAGGGC
TCCCCCGCCGCCGCATTGGTATCCGCTGCTGCTGCTGCCGCTGCTGCTGG
CGCGGATCTGGTTGCCGACGACGACCGAATAGTGGCCCTGGCAAGCAAGA
CGCCGTCGACCTTGGGGGGCGGCGTGAGGGCGGGCAAGAGTCGTGGCGGA
CAAGCAGCCGTGCCAGAAGAGCGTGAGACACCGTCCGCTACGCCGGCTGT
GGTGAATTCTCGGATGACGTGGGCGTCATCGAGCGGTGGCCGCAGTGGCG
GCGGCGGCGGTGCTGCTGCTGCTGGCGCTGCTGGAACAGCGAGCGACATG
GCGACGAGATCAAATGGGCGGTATAGCGTCGGCAGTCTTGTGTCTCAAGA
TGAACTGACGGACAAGAAGAGCGTGAGACACCGTCCGCTACGCCGGCTGT
GGTGAATTCTCGGATGACGTGGGCGTCATCGAGCGGTGGCCGCAGTGGCG
GCGGCGGCGGTGCTGCTGCTGCTGGCGCTGCTGGAACAGCGAGCGACATG
GCGACGAGATCAAATGGGCGGTATAGCGTCGGCAGTCTTGTGTCTCAAGA
TGAACTGACGGACAAGATATTCACCCATAGCGGCAAAGGTGGCGTTTCGT
CTGATGATGACGATGGCGGTTTAAGCGGTGGCGGGTGGGATGACGTCGGA
TTCGGCGGTGGTGGTGATGATGACGAGAGCGATGACACCGATAGCGATCA
TATATTCACCCATAGCGGCAAAGGTGGCGTTTCGTCTGATGATGACGATG
GCGGTTTAAGCGGTGGCGGGTGGGATGACGTCGGATTCGGCGGTGGTGGT
GATGATGACGAGAGCGATGACACCGATAGCGATCATGCGAGCAGCAAAGT
CAAATCTCCAGGCGGCAAAAAGGTGCTGAGTGTCAGGAGTCCATCCGCTC
GAAAGGCAAGTAGCAGTAGATTGTCGCCGTCGGCCTCATCACCACCGCTG
GCCTCGCCACCACCGCCGGCCTCACCACCACCGCCGGCCTCACCACCACC
GCCAGCCTCACCACCACCGCCGGTCTCACCACCACCGCCGGCCTCACCAC
CACCGCCGGCCTCACTACCACCGCTGGCCTCACCACCACCACCGGCCTCA
CCATCACCGCCCCCGCCAGCGGTGGCTACCGCCAAAAATCCTCCTTCCTC
CGCCGCTAGCTCCGCCGCCTCTACGTCTTCCTTCTCTCGCCGAACCCGCA
GTTCTAGTGGCGGCGGAGGCGAGGGGGGTGGAGGGGGCAAGGCGAAAATG
GCGACACGGGGATCGTTGAGTTCTTCAGCGTCTGGTTCGCCGTCATCGCA
GGCGGCATCTGCTGGCGGGAGGAAAAGCAGCGAGACGGGAAAAAAAAAGG
GGAAGGAGAAAGTGAAGAAGCGACGAGGAGGGAGCGTAGGAGGAGATGTC
GACGAGGAAGAGATCTTTGACAGAGGGATCGTTGGTGATTACGATGATGA
TGATGATGATTGTGTTGATGATAATGGTGGTGGTGGTGGTGGTGGTGGTA
GTAGTGATGATGATAGTGAGGCAATGAGCCGCGGGAAGAGGAAAAGCAAA
GGGGCGAGCAGCAAAGTCAAATCTCCAGGCGGCAAAAAGGTGCTGAGTGT
CAGGAGTCCATCCGCTCGAAAGGCAAGTAGCAGTAGATTGTCGCCGTCGG
CCTCATCACCACCGCTGGCCTCGCCACCACCGCCGGCCTCACCACCACCG
CCGGCCTCACCACCACCGCCAGCCTCACCACCACCGCCGGTCTCACCACC
ACCGCCGGCCTCACCACCACCGCCGGCCTCACTACCACCGCTGGCCTCAC
CACCACCACCGGCCTCACCATCACCGCCCCCGCCAGCGGTGGCTACCGCC
AAAAATCCTCCTTCCTCCGCCGCTAGCTCCGCCGCCTCTACGTCTTCCTT
CTCTCGCCGAACCCGCAGTTCTAGTGGCGGCGGAGGCGAGGGGGGTGGAG
GGGGCAAGGCGAAAATGGCGACACGGGGATCGTTGAGTTCTTCAGCGTCT
GGTTCGCCGTCATCGCAGGCGGCATCTGCTGGCGGGAGGAAAAGCAGCGA
GACGGGAAAAAAAAAGGGGAAGGAGAAAGTGAAGAAGCGACGAGGAGGGA
GCGTAGGAGGAGATGTCGACGAGGAAGAGATCTTTGACAGAGGGATCGTT
GGTGATTACGATGATGATGATGATGATTGTGTTGATGATAATGGTGGTGG
TGGTGGTGGTGGTGGTAGTAGTGATGATGATAGTGAGGCAATGAGCCGCG
GGAAGAGGAAAAGCAAAGGG back to top
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