mRNA_H-paniculata_contig34789.9273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34789.9273.1
Unique NamemRNA_H-paniculata_contig34789.9273.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: D8LIA5_ECTSI (Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA5_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.160e-31
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVF S PFWKFAAPLVRARFPHT+GV+ +AFYRGLNRVAP LIRVDADEVTYPLHIILR
Sbjct:  420 SLLWERMVFQSRPFWKFAAPLVRARFPHTKGVSDEAFYRGLNRVAPSLIRVDADEVTYPLHIILR 484          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A836CFE7_9STRA (Putative carboxypeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFE7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.680e-24
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVFL  PFWKFA PL    FPHT   T++ FYR +N+V+PGLIRV+ADEVTYP+HIILR
Sbjct:  372 SLLWERMVFLGRPFWKFATPLFHEHFPHTAECTSEDFYRAVNKVSPGLIRVNADEVTYPMHIILR 436          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A7S0VY38_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VY38_9CRYP)

HSP 1 Score: 99.4 bits (246), Expect = 2.770e-24
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMV  SLPFWK+A P+V   FPHT+  T + FYR +N V P LIRVDADEVTYPLH+ILR
Sbjct:   23 SLLWERMVGQSLPFWKWATPIVHKYFPHTKACTPEDFYRAVNHVRPSLIRVDADEVTYPLHVILR 87          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A7S4D9D9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9D9_HETAK)

HSP 1 Score: 100 bits (250), Expect = 6.130e-24
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVFLS PFW +A P+    FPHT+  TAD FY  +N+V PG IRVDADEVTYPLH++LR
Sbjct:  150 SLLWERMVFLSRPFWDYATPIFHKHFPHTKDCTADDFYAVMNQVEPGFIRVDADEVTYPLHVVLR 214          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A7S3XZ66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ66_HETAK)

HSP 1 Score: 100 bits (250), Expect = 1.270e-23
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVFLS PFW +A P+    FPHT+  TAD FY  +N+V PG IRVDADEVTYPLH++LR
Sbjct:  221 SLLWERMVFLSRPFWDYATPIFHKHFPHTKDCTADDFYAVMNQVEPGFIRVDADEVTYPLHVVLR 285          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A7S2U1I1_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2U1I1_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 2.350e-23
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVF   PFW++A P++   FPHT+ V+A+ FY+ +NRV+ GLIRVDADE+TYPLHIILR
Sbjct:  262 SLLWERMVFQGRPFWEYATPIIHKHFPHTKDVSAEDFYKAVNRVSAGLIRVDADELTYPLHIILR 326          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: R1E666_EMIHU (Uncharacterized protein n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E666_EMIHU)

HSP 1 Score: 97.8 bits (242), Expect = 2.800e-22
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMV  S PFW+FAAPL  ARFP T   TA  F+R  NRV+PG IRV+ADEVTYPLH+ILR
Sbjct:  329 SLLWERMVLQSKPFWEFAAPLFHARFPFTAEATAADFFRTYNRVSPGCIRVEADEVTYPLHVILR 393          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A7S0DL71_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL71_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.420e-21
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVF   PFW +A P++   FPHT+ +TAD  Y+ +N V PGLIR +ADE+TYPLHI+LR
Sbjct:  369 SLLWERMVFQGRPFWDYATPIIHKYFPHTKDITADELYKAVNHVQPGLIRTEADELTYPLHIMLR 433          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A7S1XPI5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPI5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.830e-21
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVF S  FWK+ AP V   FPHTEG + + FY  +NRV  GLIRVDADE+TYPLHIILR
Sbjct:  324 SLLWERMVFQSRAFWKYMAPKVAKYFPHTEGTSPEDFYAYVNRVQAGLIRVDADELTYPLHIILR 388          
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Match: A0A7S2KNN7_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2KNN7_BIGNA)

HSP 1 Score: 93.6 bits (231), Expect = 8.310e-21
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 SLLWERMVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEVTYPLHIILR 195
            SLLWERMVF    FW++A P++   FPHT+ V A  FYR +NRV PGLIR +ADE+TYPLHI+LR
Sbjct:  294 SLLWERMVFQGKAFWQYATPIIHKYFPHTKDVDAMEFYRAVNRVQPGLIRTEADELTYPLHIMLR 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34789.9273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA5_ECTSI2.160e-3189.23Probable carboxypeptidase Cxp n=1 Tax=Ectocarpus s... [more]
A0A836CFE7_9STRA2.680e-2470.77Putative carboxypeptidase n=1 Tax=Tribonema minus ... [more]
A0A7S0VY38_9CRYP2.770e-2469.23Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S4D9D9_HETAK6.130e-2467.69Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XZ66_HETAK1.270e-2367.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2U1I1_9EUKA2.350e-2366.15Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
R1E666_EMIHU2.800e-2270.77Uncharacterized protein n=4 Tax=Emiliania huxleyi ... [more]
A0A7S0DL71_9EUKA1.420e-2161.54Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S1XPI5_9STRA1.830e-2169.23Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2KNN7_BIGNA8.310e-2163.08Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34789contigH-paniculata_contig34789:602..799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue9.2e-23
Seed eggNOG ortholog2880.D8LIA5
KEGG koko:K01299
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Carboxypeptidase Taq (M32) metallopeptidase
EggNOG OGs2QQRM@2759,COG2317@1
EC3.4.17.19
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size198
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.3707402-CDS-H-paniculata_contig34789:601..7811622930074.3707402-CDS-H-paniculata_contig34789:601..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34789 602..781 -
1691481136.13667-CDS-H-paniculata_contig34789:601..7811691481136.13667-CDS-H-paniculata_contig34789:601..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34789 602..781 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.3828275-UTR-H-paniculata_contig34789:781..7991622930074.3828275-UTR-H-paniculata_contig34789:781..799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34789 782..799 -
1691481136.148879-UTR-H-paniculata_contig34789:781..7991691481136.148879-UTR-H-paniculata_contig34789:781..799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34789 782..799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34789.9273.1prot_H-paniculata_contig34789.9273.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34789 602..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34789.9273.1

>prot_H-paniculata_contig34789.9273.1 ID=prot_H-paniculata_contig34789.9273.1|Name=mRNA_H-paniculata_contig34789.9273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MVFLSLPFWKFAAPLVRARFPHTEGVTADAFYRGLNRVAPGLIRVDADEV
TYPLHIILR*
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mRNA from alignment at H-paniculata_contig34789:602..799-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34789.9273.1 ID=mRNA_H-paniculata_contig34789.9273.1|Name=mRNA_H-paniculata_contig34789.9273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig34789:602..799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTTGCTCTGGGAAAGAATGGTGTTTTTGTCTCTGCCGTTCTGGAAGTT CGCGGCTCCGCTGGTGCGCGCGCGTTTTCCTCACACGGAGGGCGTCACTG CGGACGCGTTTTACCGGGGGTTGAATCGAGTCGCCCCCGGGTTGATACGG GTGGATGCCGACGAGGTGACCTATCCGCTCCATATTATCCTCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34789:602..799-

>mRNA_H-paniculata_contig34789.9273.1 ID=mRNA_H-paniculata_contig34789.9273.1|Name=mRNA_H-paniculata_contig34789.9273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig34789:602..799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTTTTGTCTCTGCCGTTCTGGAAGTTCGCGGCTCCGCTGGTGCG
CGCGCGTTTTCCTCACACGGAGGGCGTCACTGCGGACGCGTTTTACCGGG
GGTTGAATCGAGTCGCCCCCGGGTTGATACGGGTGGATGCCGACGAGGTG
ACCTATCCGCTCCATATTATCCTCAGGTGAATGGTGTTTTTGTCTCTGCC
GTTCTGGAAGTTCGCGGCTCCGCTGGTGCGCGCGCGTTTTCCTCACACGG
AGGGCGTCACTGCGGACGCGTTTTACCGGGGGTTGAATCGAGTCGCCCCC
GGGTTGATACGGGTGGATGCCGACGAGGTGACCTATCCGCTCCATATTAT
CCTCAGGTGA
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