mRNA_H-paniculata_contig34780.9271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34780.9271.1
Unique NamemRNA_H-paniculata_contig34780.9271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: D8LBI4_ECTSI (Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI4_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 8.110e-37
Identity = 67/82 (81.71%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   25 TLAAIGADSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGST--GGKPFVAYEKRFRMPAVAAP 264
            +LAAI  D+S+DLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIE      G KPF+AYE RFRMPAV AP
Sbjct:  196 SLAAIDGDNSIDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIETNGAYPGAKPFLAYESRFRMPAVGAP 277          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: D7FWJ2_ECTSI (Purple acid phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ2_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.640e-29
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   19 RRTLAAIGADS-SLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGGKPFVAYEKRFRMPAVA 258
            R TL A+G    ++D+VLHAGDL+YA+C Q RWDSFMRMLDPVAS +PWMVAAGNHEIEAGST   PF A++ RFRMP+ A
Sbjct:  192 RNTLDALGRHQPAIDVVLHAGDLAYAECIQERWDSFMRMLDPVASHVPWMVAAGNHEIEAGSTSSGPFAAFQHRFRMPSEA 272          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: A0A7S3UT50_HETAK (Purple acid phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT50_HETAK)

HSP 1 Score: 100 bits (248), Expect = 8.350e-23
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   25 TLAAIGADSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGGKPFVAYEKRFRMPAVA 258
            T+  +G D +   V+HAGDL+YADC QPRWD+F  ++ PVA RLPWMV  GNHEIE  +     F+AYE RFRMP VA
Sbjct:  185 TVTQVGRDPAFRFVVHAGDLAYADCFQPRWDTFGELVAPVARRLPWMVVPGNHEIEYDAISNTTFLAYEARFRMPQVA 262          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: A0A7S2CG88_9STRA (Purple acid phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG88_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.400e-22
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   25 TLAAIGADSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGGKPFVAYEKRFRMPAVA 258
            T+  I A+  +  VLHAGDL+YADC   RWDS+ +M+ P ASRLPWMV  GNHEIE     G  F A+E RFRMPAVA
Sbjct:  127 TVDHILAEPDIAAVLHAGDLAYADCKDTRWDSWSQMVQPAASRLPWMVCPGNHEIETDKFTGATFTAFEARFRMPAVA 204          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: A0A5D6YDX0_9STRA (Purple acid phosphatase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDX0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.770e-20
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   22 RTLAAIGADSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGG-KPFVAYEKRFRMP 249
            +TL  + ++  L  +LHAGDLSYAD +QPRWD + R+++P+ASR+PWMVAAGNHE E        PFVAY+ RFRMP
Sbjct:  657 QTLRHLSSERHLAAILHAGDLSYADSEQPRWDRWGRLIEPLASRMPWMVAAGNHEQERPCQAHIDPFVAYQVRFRMP 733          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: F0WT66_9STRA (Purple acid phosphatase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WT66_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.560e-20
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   19 RRTLAAIGA-DSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGGK-PFVAYEKRFRMPAVAAP 264
            +RTL  I +    L  + HAGDLSYAD DQPRWDS+ +M++P+AS++PWMVA+GNHE E        PF++Y+KRF MP V+ P
Sbjct:  189 KRTLEYISSRKKDLRAIFHAGDLSYADSDQPRWDSWAKMVEPIASQIPWMVASGNHEEEEPCKAKTDPFISYQKRFCMPYVSEP 272          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: A0A024GJF9_9STRA (Purple acid phosphatase n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GJF9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.420e-20
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   19 RRTLAAIGA-DSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAG-STGGKPFVAYEKRFRMPAVAAP 264
            +RTL  I +    L  + HAGDLSYAD DQPRWDS+ ++++P+AS +PWMVA+GNHE E    +   PF++Y+ RFRMP +  P
Sbjct:  169 QRTLQYIASRKKELTAIFHAGDLSYADSDQPRWDSWAKLIEPIASEIPWMVASGNHEKETPCKSKTDPFISYQNRFRMPYINEP 252          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: A0A835YVM8_9STRA (Purple acid phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   61 LVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGGKPFVAYEKRFRMPAVAAP 264
            +VLHAGDL+YADC+Q RWDS+ R+ +  A+R+PWM AAGNHEIE   + G  F AYE R+ MPA   P
Sbjct:  144 VVLHAGDLAYADCEQDRWDSYGRLAEAAAARVPWMTAAGNHEIELEPSTGLAFTAYEARYAMPAARPP 211          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: A0A812QP08_SYMMI (Purple acid phosphatase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812QP08_SYMMI)

HSP 1 Score: 90.1 bits (222), Expect = 3.810e-19
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   25 TLAAIGADSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGGKPFVAYEKRFRMPAV 255
            T+  + AD SL ++LHAGD++YAD +  RWDS+   ++P++SRL WMV  GNHEIE+    G+ F AYE RF MPAV
Sbjct:  162 TVRHLDADRSLQIILHAGDMAYADTESRRWDSYGLKVEPLSSRLQWMVCPGNHEIESDYYTGESFKAYEARFAMPAV 238          
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Match: A0A1Q9EB14_SYMMI (Purple acid phosphatase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EB14_SYMMI)

HSP 1 Score: 90.1 bits (222), Expect = 4.080e-19
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   25 TLAAIGADSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVASRLPWMVAAGNHEIEAGSTGGKPFVAYEKRFRMPAV 255
            T+  + AD SL ++LHAGD++YAD +  RWDS+   ++P++SRL WMV  GNHEIE+    G+ F AYE RF MPAV
Sbjct:  162 TVRHLDADRSLQIILHAGDMAYADTESRRWDSYGLKVEPLSSRLQWMVCPGNHEIESDYYTGESFKAYEARFAMPAV 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34780.9271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI4_ECTSI8.110e-3781.71Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWJ2_ECTSI3.640e-2969.14Purple acid phosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UT50_HETAK8.350e-2357.69Purple acid phosphatase (Fragment) n=1 Tax=Heteros... [more]
A0A7S2CG88_9STRA7.400e-2258.97Purple acid phosphatase n=1 Tax=Dictyocha speculum... [more]
A0A5D6YDX0_9STRA1.770e-2057.14Purple acid phosphatase n=1 Tax=Pythium brassicum ... [more]
F0WT66_9STRA2.560e-2053.57Purple acid phosphatase n=1 Tax=Albugo laibachii N... [more]
A0A024GJF9_9STRA4.420e-2051.19Purple acid phosphatase n=2 Tax=Albugo candida Tax... [more]
A0A835YVM8_9STRA1.180e-1958.82Purple acid phosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A812QP08_SYMMI3.810e-1953.25Purple acid phosphatase n=4 Tax=Symbiodinium TaxID... [more]
A0A1Q9EB14_SYMMI4.080e-1953.25Purple acid phosphatase n=1 Tax=Symbiodinium micro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34780contigH-paniculata_contig34780:1289..2005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.6e-31
Seed eggNOG ortholog2880.D8LBI4
KEGG koko:K22390
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.124489-CDS-H-paniculata_contig34780:1288..14471622930074.124489-CDS-H-paniculata_contig34780:1288..1447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34780 1289..1447 -
1691481136.045495-CDS-H-paniculata_contig34780:1288..14471691481136.045495-CDS-H-paniculata_contig34780:1288..1447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34780 1289..1447 -
1622930074.1395822-CDS-H-paniculata_contig34780:1900..20051622930074.1395822-CDS-H-paniculata_contig34780:1900..2005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34780 1901..2005 -
1691481136.0623646-CDS-H-paniculata_contig34780:1900..20051691481136.0623646-CDS-H-paniculata_contig34780:1900..2005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34780 1901..2005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34780.9271.1prot_H-paniculata_contig34780.9271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34780 1289..2005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34780.9271.1

>prot_H-paniculata_contig34780.9271.1 ID=prot_H-paniculata_contig34780.9271.1|Name=mRNA_H-paniculata_contig34780.9271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MPVICLRRTLAAIGADSSLDLVLHAGDLSYADCDQPRWDSFMRMLDPVAS
RLPWMVAAGNHEIEAGSTGGKPFVAYEKRFRMPAVAAP
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mRNA from alignment at H-paniculata_contig34780:1289..2005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34780.9271.1 ID=mRNA_H-paniculata_contig34780.9271.1|Name=mRNA_H-paniculata_contig34780.9271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=717bp|location=Sequence derived from alignment at H-paniculata_contig34780:1289..2005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGTCATATGCCTCAGGAGGACGCTGGCTGCTATAGGTGCTGATAG TTCTTTGGACCTCGTCCTACACGCGGGGGATTTGTCCTACGCGGACTGCG ATCAGGTAAGATATTGTTATGTTAGACTGGATATTTGTGTATTACTCAGT ACGCAACATCACCCCCGAGATGATTGTTGTCTAGATGATTTTACAAGGTA TCGTACTTACTACTTTTAGAACCTTGACTTGTAGTTGTTATATCATGAAG AAGGTTTCCTGGGGACGATCAGTCTCCAGAATGTTCCTCGCTGTTTACCC GTGTTACCAACAAAATATTATTTTTCATCACGTGCCAAATTAATTAAAAA TGCCACGATTTAATACACAAAGTCCTTCCCCTGGTGTACTGCTCGTAGAG TCACCTTGCATGTCCGTGCTCGTGTTGAGCACCTCTCGGCTATATGGTTC AAACGTTCATTCTGCCAAGCACAAACACATAAATTGGTCCAGGGTTTTCG TAATCTTATCCCCCCTTCTCGTCCTTCTCCCCTTATATTTCGTGAAAAAA ACAACTAGCCACGATGGGACTCGTTCATGCGTATGCTGGACCCCGTCGCT TCCCGCCTGCCGTGGATGGTTGCTGCAGGCAACCACGAGATCGAGGCCGG CTCTACTGGAGGAAAACCGTTCGTTGCCTACGAAAAGCGCTTCCGAATGC CGGCCGTCGCCGCGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig34780:1289..2005-

>mRNA_H-paniculata_contig34780.9271.1 ID=mRNA_H-paniculata_contig34780.9271.1|Name=mRNA_H-paniculata_contig34780.9271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig34780:1289..2005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGTCATATGCCTCAGGAGGACGCTGGCTGCTATAGGTGCTGATAG
TTCTTTGGACCTCGTCCTACACGCGGGGGATTTGTCCTACGCGGACTGCG
ATCAGATGCCCGTCATATGCCTCAGGAGGACGCTGGCTGCTATAGGTGCT
GATAGTTCTTTGGACCTCGTCCTACACGCGGGGGATTTGTCCTACGCGGA
CTGCGATCAGCCACGATGGGACTCGTTCATGCGTATGCTGGACCCCGTCG
CTTCCCGCCTGCCGTGGATGGTTGCTGCAGGCAACCACGAGATCGAGGCC
GGCTCTACTGGAGGAAAACCGTTCGTTGCCTACGAAAAGCGCTTCCGAAT
GCCGGCCGTCGCCGCGCCCCCACGATGGGACTCGTTCATGCGTATGCTGG
ACCCCGTCGCTTCCCGCCTGCCGTGGATGGTTGCTGCAGGCAACCACGAG
ATCGAGGCCGGCTCTACTGGAGGAAAACCGTTCGTTGCCTACGAAAAGCG
CTTCCGAATGCCGGCCGTCGCCGCGCCC
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