mRNA_H-paniculata_contig34776.9269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34776.9269.1
Unique NamemRNA_H-paniculata_contig34776.9269.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34776.9269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34776contigH-paniculata_contig34776:419..1889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930073.85231-CDS-H-paniculata_contig34776:419..4801622930073.85231-CDS-H-paniculata_contig34776:419..480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34776 420..480 -
1691481135.9225507-CDS-H-paniculata_contig34776:419..4801691481135.9225507-CDS-H-paniculata_contig34776:419..480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34776 420..480 -
1622930073.8659623-CDS-H-paniculata_contig34776:1767..18891622930073.8659623-CDS-H-paniculata_contig34776:1767..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34776 1768..1889 -
1691481135.9327426-CDS-H-paniculata_contig34776:1767..18891691481135.9327426-CDS-H-paniculata_contig34776:1767..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34776 1768..1889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34776.9269.1prot_H-paniculata_contig34776.9269.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34776 420..1889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34776.9269.1

>prot_H-paniculata_contig34776.9269.1 ID=prot_H-paniculata_contig34776.9269.1|Name=mRNA_H-paniculata_contig34776.9269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
QNRPQDRQRSTSDTVTGNRGIRRRLTNVDMTLSFHDYGDDGDSLLPTCKM
QPSRMEEGTEV
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mRNA from alignment at H-paniculata_contig34776:419..1889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34776.9269.1 ID=mRNA_H-paniculata_contig34776.9269.1|Name=mRNA_H-paniculata_contig34776.9269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1471bp|location=Sequence derived from alignment at H-paniculata_contig34776:419..1889- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACAGACCGCAGGATAGGCAACGCAGTACTAGTGACACAGTGACAGG
AAACCGTGGCATCCGCCGGCGGTTGACGAACGTCGACATGACGTTGAGCT
TTCACGACTACGGTGATGATGGGCGAGTGAATATGCCAGTCGGTGCCTGT
TGGTACCGGCTCGTATCGTGAGGTTACGTTTCAGGCTCAGACTAGGCGAG
GCTAAGGGCCGTTCTAAACGTTGGTACTTTTAGTTTTCCCCCCCTTTATT
TTCTCTTTTTTTTTTTTTTTTTGTCAATTTTTATCTTCCTCAAATTTTTC
AACTTTTTTTCAAGACACGAAAAGTGATATTTCTGTACGTATATACCCTG
TTGTTCTTTAAGATTAAATTCAAGTTTGTTTGTTTTTTTCCTCGCGGACA
TAAATTTCAGGGTGTTTCGGGTAAAAGGCAGGAAAAGAGGAGAGGGAAAC
TAAGACCCACGTTTAGGACGGCTCTAAGCGCGGATTGATGCCGTGTGGTA
AGGTTTCACATTCGTGATGAACAGACGAGAATTGTGTACAATCAGTTCGG
CTGCAAAGCCTATAATATTAACCAGCGTCCAATTTTCATGTATTTATTTT
TTCCTATTATGAAACGCCTCCATCGGTTCCCCGCTCTGTGCAGTACTTAC
AGCAAATGCGCGTTTAGATGTATCCAGTTCATTGATGCGTAGCTCAGACC
TGTTGGTCTCACCATGGAGTACGACTGCTTAAACGTAGAGTCCGCCTGTT
CCTGGTTGTCTTGCAGCTGTAGCACGATAGCACGGTGTCTTTTCTGTTGA
GAGGGGTATTTAGGGGCTTAGTGGCAAAGATCAAGGAACTGACTCCAAAT
GCGGAATTGACACTCTGTTCAAGTAGCTACTGCACCACCCCGGTATTTGG
GGGCTGTGCGAGGCTACACTGTACGAAGTCCTCCGTAGGCTCCGCGCCCT
ATTGTTCGAATCATGGCACAATGCTGATTCTTTGATTGGCCAGTTTACCC
CGCGTTGGGCTGTAGTAGCATCCATCCAACCTCTCTCGCCACGCGTTCTT
GGAACGTAAGAAGAGCCACCGAATTGCCAGCGGGTCAACATACTCATTGC
CGGACACGAAATATTTCACATGCTCACACAACAGCAATAACCTGTTTCTT
CAATTGTTAACGGGTTCTTGGGCCTGAACCAGTTCAGTTCCTTGGAATTC
AAAGAACAATTCCTAGGATTAAATGTATATATATATATATATATATATAT
ATATATAATATATATATTTAAGATCTGGGAGTGTACGAAAGCATCGCAAA
AAGAGCCGTTCTTTGAATCGTCTCGAAAAGCGATTTCTTGCAAGTTGGAG
TACCCTTTTTTTGGTAACTTGTTTCGTGTCTCATTATATATATCCTGTTT
TTGGTCCAGGGATAGCCTGCTTCCGACCTGTAAGATGCAGCCGTCAAGAA
TGGAGGAAGGCACAGAGGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig34776:419..1889-

>mRNA_H-paniculata_contig34776.9269.1 ID=mRNA_H-paniculata_contig34776.9269.1|Name=mRNA_H-paniculata_contig34776.9269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig34776:419..1889- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAACAGACCGCAGGATAGGCAACGCAGTACTAGTGACACAGTGACAGG
AAACCGTGGCATCCGCCGGCGGTTGACGAACGTCGACATGACGTTGAGCT
TTCACGACTACGGTGATGATGGCAGAACAGACCGCAGGATAGGCAACGCA
GTACTAGTGACACAGTGACAGGAAACCGTGGCATCCGCCGGCGGTTGACG
AACGTCGACATGACGTTGAGCTTTCACGACTACGGTGATGATGGGGATAG
CCTGCTTCCGACCTGTAAGATGCAGCCGTCAAGAATGGAGGAAGGCACAG
AGGTCGGATAGCCTGCTTCCGACCTGTAAGATGCAGCCGTCAAGAATGGA
GGAAGGCACAGAGGTC
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