mRNA_H-paniculata_contig3475.9267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3475.9267.1
Unique NamemRNA_H-paniculata_contig3475.9267.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3475.9267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3475contigH-paniculata_contig3475:10044..10727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size211
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3475.9267.1prot_H-paniculata_contig3475.9267.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3475 10090..10727 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.4053986-UTR-H-paniculata_contig3475:10043..100891622930072.4053986-UTR-H-paniculata_contig3475:10043..10089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3475 10044..10089 -
1691481135.8069797-UTR-H-paniculata_contig3475:10043..100891691481135.8069797-UTR-H-paniculata_contig3475:10043..10089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3475 10044..10089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.421486-CDS-H-paniculata_contig3475:10089..101621622930072.421486-CDS-H-paniculata_contig3475:10089..10162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 10090..10162 -
1691481135.8154237-CDS-H-paniculata_contig3475:10089..101621691481135.8154237-CDS-H-paniculata_contig3475:10089..10162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 10090..10162 -
1622930072.4406798-CDS-H-paniculata_contig3475:10635..107271622930072.4406798-CDS-H-paniculata_contig3475:10635..10727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 10636..10727 -
1691481135.8236372-CDS-H-paniculata_contig3475:10635..107271691481135.8236372-CDS-H-paniculata_contig3475:10635..10727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 10636..10727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3475.9267.1

>prot_H-paniculata_contig3475.9267.1 ID=prot_H-paniculata_contig3475.9267.1|Name=mRNA_H-paniculata_contig3475.9267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
RRSIARPPTAKKTVSQKSAYSCSRRVTIFASNRPDYRRLCYGFLRALVPR
QQRR*
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mRNA from alignment at H-paniculata_contig3475:10044..10727-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3475.9267.1 ID=mRNA_H-paniculata_contig3475.9267.1|Name=mRNA_H-paniculata_contig3475.9267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=684bp|location=Sequence derived from alignment at H-paniculata_contig3475:10044..10727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCTCCATCGCCCGTCCTCCCACCGCAAAAAAAACTGTCTCTCAAAA
GTCAGCCTACTCCTGTTCCCGGCGGGTGACAATTTTCGCGAGGTACGCAT
CGTTGACGGATGGTTCGAGTCGAGTTTCCTCAGGATCGGATCGCCTCTGG
GTAAAAGTAGGGCGGAGGTACGCAAGAGTTTGTTTCGACTGTCAAAGTCA
GAGCATGGGAAACCGCGGGACAGAGCTGTCCGCGGGGGGGAGGGAAGGGA
TTACTATCGTGTTTCGTGTACCAAGGTATCGTTGTTCAAGCGGTGTGTGG
TGGGTGTCTATAGACTCTACTGTGCTGTGGAATAAAATGGATCATTATCG
TAAGTATCAATCATGTACTGAAGTAGGTCAATAAGAGCTAGCGGTGTTTA
CTGACTCTACCGTGCTGCACTCTGCCTCTGGAGTAACATTGATAATGATC
AATGATGTACTCAATATGATCAAAGTACAGTATTTCTATACATTCCTCCT
GCCACACATAAAACATCCAGAGCAGACCAACTTCTTTGGCTGCACCCTTC
TCCTTTTTTCCTCAGCAACCGGCCTGACTATCGACGATTATGCTATGGAT
TCTTACGGGCGCTGGTCCCGCGGCAGCAGAGGCGATAGAGGCGGCGATAT
AGACGGGGCGTATTACGATGACAGTGAAGAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig3475:10044..10727-

>mRNA_H-paniculata_contig3475.9267.1 ID=mRNA_H-paniculata_contig3475.9267.1|Name=mRNA_H-paniculata_contig3475.9267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig3475:10044..10727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCTCCATCGCCCGTCCTCCCACCGCAAAAAAAACTGTCTCTCAAAA
GTCAGCCTACTCCTGTTCCCGGCGGGTGACAATTTTCGCGAGCGGCGCTC
CATCGCCCGTCCTCCCACCGCAAAAAAAACTGTCTCTCAAAAGTCAGCCT
ACTCCTGTTCCCGGCGGGTGACAATTTTCGCGAGCAACCGGCCTGACTAT
CGACGATTATGCTATGGATTCTTACGGGCGCTGGTCCCGCGGCAGCAGAG
GCGATAGCAACCGGCCTGACTATCGACGATTATGCTATGGATTCTTACGG
GCGCTGGTCCCGCGGCAGCAGAGGCGATAG
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