mRNA_H-paniculata_contig3475.9266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3475.9266.1
Unique NamemRNA_H-paniculata_contig3475.9266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3475.9266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3475contigH-paniculata_contig3475:8937..10004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.3224254-CDS-H-paniculata_contig3475:8936..94031622930072.3224254-CDS-H-paniculata_contig3475:8936..9403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 8937..9403 -
1691481135.786987-CDS-H-paniculata_contig3475:8936..94031691481135.786987-CDS-H-paniculata_contig3475:8936..9403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 8937..9403 -
1622930072.3414543-CDS-H-paniculata_contig3475:9973..100041622930072.3414543-CDS-H-paniculata_contig3475:9973..10004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 9974..10004 -
1691481135.798598-CDS-H-paniculata_contig3475:9973..100041691481135.798598-CDS-H-paniculata_contig3475:9973..10004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 9974..10004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3475.9266.1prot_H-paniculata_contig3475.9266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3475 8937..10004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3475.9266.1

>prot_H-paniculata_contig3475.9266.1 ID=prot_H-paniculata_contig3475.9266.1|Name=mRNA_H-paniculata_contig3475.9266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
GRDIVERSPYGSLTHLDSHKRIRDTPPGKGCSDSSAHQLVVPIRRHYTHT
RFTTTNCEPLYDRTATQLRDLYGMETATQRSPATRQAAATHAAPACTVSR
SCELASAVHSDARDELDWSVLSLRHRESQLSCKAVDWTVTAGASLRHKEQ
LFRTVRSSPSQEFCRG
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mRNA from alignment at H-paniculata_contig3475:8937..10004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3475.9266.1 ID=mRNA_H-paniculata_contig3475.9266.1|Name=mRNA_H-paniculata_contig3475.9266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig3475:8937..10004- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGGATATTGTAGAAAGGTCACCATACGGTGAGGTTTCGCTATTGCG
GTGTGCATGGACACAGGATGAGGGCTGGGAAGGTGCAGATTATATTTGTT
TGTTTAGGAGTGAGACCCTCTTCCCGTCGGGCATGTACCCTGCACACAGA
CAGCACAACATAGTCAGTACAACCGTATTCAGTCAAGTAGAGTCAGTACG
ATATAGTGCCGTGCCGTCAGTCAGTACAAATCTTGATCTGGACTCTACGA
TGTAACTGTGCTGTACACTGACTGACTGTACGTAGTACAAACAGAGCAGT
TCAGTGCAGACAAGTACAGGTCGGTCGCATGTATGAAATGTTGGGTGTTT
TTTTGCAGTTGTTCACCTCTCTGTGTGTATTATTGATCAATCGGGCTGCT
TGGATGCGCTTAATTAACGCAAATTTCTGGTCAGGAAGAAAAAATGGGGA
AGCGGTTGAAGACCTTGAAACCCAAACGTTCTAGTGGTGAGGGAGGCCCT
TGACGGACCACTTCAGACATCTGAAATTTCGGGGTGTTTTCTCTGTGACT
GCCCGCAAAAAATACACCTGCGCATTTGCTTTCTCATTTCCCACAAAGCA
GGATCTTTGACGCATCTTGACAGCCATAAACGCATCAGGGACACTCCCCC
CGGCAAGGGCTGTTCAGACAGTAGTGCTCACCAGCTGGTCGTGCCTATTA
GGCGCCATTACACACACACAAGGTTTACCACTACCAATTGCGAGCCGTTG
TATGATCGCACCGCCACGCAGCTGCGCGATTTGTACGGAATGGAGACAGC
GACTCAGCGATCACCTGCAACACGGCAGGCAGCCGCTACACATGCCGCAC
CAGCATGCACGGTGTCTCGGTCCTGTGAATTGGCGAGCGCCGTCCACAGT
GATGCCCGTGACGAGTTAGACTGGAGCGTACTCTCTCTGCGCCACCGCGA
GAGTCAGCTCTCGTGCAAAGCCGTTGATTGGACGGTTACTGCTGGAGCTT
CCCTACGTCACAAAGAACAACTGTTTCGAACTGTTCGCTCCTCGCCTTCG
CAGGAGTTTTGCCGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3475:8937..10004-

>mRNA_H-paniculata_contig3475.9266.1 ID=mRNA_H-paniculata_contig3475.9266.1|Name=mRNA_H-paniculata_contig3475.9266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig3475:8937..10004- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGGATATTGTAGAAAGGTCACCATACGGGGCGGGATATTGTAGAAA
GGTCACCATACGGATCTTTGACGCATCTTGACAGCCATAAACGCATCAGG
GACACTCCCCCCGGCAAGGGCTGTTCAGACAGTAGTGCTCACCAGCTGGT
CGTGCCTATTAGGCGCCATTACACACACACAAGGTTTACCACTACCAATT
GCGAGCCGTTGTATGATCGCACCGCCACGCAGCTGCGCGATTTGTACGGA
ATGGAGACAGCGACTCAGCGATCACCTGCAACACGGCAGGCAGCCGCTAC
ACATGCCGCACCAGCATGCACGGTGTCTCGGTCCTGTGAATTGGCGAGCG
CCGTCCACAGTGATGCCCGTGACGAGTTAGACTGGAGCGTACTCTCTCTG
CGCCACCGCGAGAGTCAGCTCTCGTGCAAAGCCGTTGATTGGACGGTTAC
TGCTGGAGCTTCCCTACGTCACAAAGAACAACTGTTTCGAACTGTTCGCT
CCTCGCCTTCGCAGGAGTTTTGCCGCGGCGATCTTTGACGCATCTTGACA
GCCATAAACGCATCAGGGACACTCCCCCCGGCAAGGGCTGTTCAGACAGT
AGTGCTCACCAGCTGGTCGTGCCTATTAGGCGCCATTACACACACACAAG
GTTTACCACTACCAATTGCGAGCCGTTGTATGATCGCACCGCCACGCAGC
TGCGCGATTTGTACGGAATGGAGACAGCGACTCAGCGATCACCTGCAACA
CGGCAGGCAGCCGCTACACATGCCGCACCAGCATGCACGGTGTCTCGGTC
CTGTGAATTGGCGAGCGCCGTCCACAGTGATGCCCGTGACGAGTTAGACT
GGAGCGTACTCTCTCTGCGCCACCGCGAGAGTCAGCTCTCGTGCAAAGCC
GTTGATTGGACGGTTACTGCTGGAGCTTCCCTACGTCACAAAGAACAACT
GTTTCGAACTGTTCGCTCCTCGCCTTCGCAGGAGTTTTGCCGCGGC
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