mRNA_H-paniculata_contig3475.9265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3475.9265.1
Unique NamemRNA_H-paniculata_contig3475.9265.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: D8LEP0_ECTSI (PSP1 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEP0_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 4.080e-64
Identity = 210/443 (47.40%), Postives = 258/443 (58.24%), Query Frame = 1 
Query:  292 PSSRNAVSPNPQPPAPKNSVEWLQR--LQRARRNTPSVITKDSASGSTFSTSCGSVSSLVPSVASREFATPAPAIGAIAVGGSSCFVSVESVGLAATVRVSPNAFVATCPAPNCPGTESCLPGATPDMVVYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDTQPSSGVPTSPFPDDGSSGITVSDSQPTTTTXXXXXXXXXXXXXXXPSAASRPSAARAD--VIVSTSPDHHADHDSGYGSSNS 1608
            PSS   + P      P N +EWLQ   L+++R+ + S    D  + +  ++   S SS  P + SR              GGS+  ++V   G AA            CPA +CP    CLPG TPD +VYEV+FKRATRTFL  E               ++  G  VKVEADRGEDLGTV+R+LPLSEYL AL++EK+AKAA       XXXXXXXXXXXXXXXXXX              XXXXXXXXXXXX   +++   CPV+AIKRI+  AN  EL  L EK++EE  ILRVCQ KVR+R+LPMKIVDAE+QFD +KL LFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDT  ++  PT+P      +  + S++   T T                 AA +P   R      ++  P    +HDSGYGS +S
Sbjct:  503 PSSSTVLQP------PNNPLEWLQNFNLRQSRKGSGSDG-NDEGTNTPRTSRSSSASSSPPCLGSR--------------GGSA--LAVPRAGSAAAXX-----XXXACPAADCPANGDCLPGTTPDTLVYEVRFKRATRTFLSEENLDP----------RSISCGTVVKVEADRGEDLGTVHRSLPLSEYLNALREEKMAKAAXXXXXXXXXXXXXXXXXXXXXXXXXKKAEADGERNGLKQXXXXXXXXXXXXXXXQQEA--CPVKAIKRILRPANTEELQQLREKSQEEANILRVCQNKVRHRNLPMKIVDAEYQFDMNKLTLFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDT--AATQPTAP------AAASASNNSTATPTACPEDSNGSVRGYQGREAAPQPVLLRTGDPPSMALEPALDTEHDSGYGSGSS 897
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BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: A0A836CPR8_9STRA (PSP1 C-terminal conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.170e-32
Identity = 93/227 (40.97%), Postives = 117/227 (51.54%), Query Frame = 1 
Query:  673 VYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQV 1353
            +Y V+FKR  RTFLL         AR  E   +L IGD VKVEADRGEDLG +    PL +  VA    K   A      GG                                            + ERE           RI+  A++ E+A L+EK  +EE++L VC+ K   R+LPM+++DAEFQ+DRHKL  +F+A+ RIDFRELVRDLFA+YKTRIWMQQV
Sbjct:    1 MYTVQFKRGARTFLL---------ARACER--SLTIGDYVKVEADRGEDLGVIVAIAPLPDAGVA---PKPPTAGHRQRGGGGALG----------------------------------------QCERE-----------RILRGASDDEIALLKEKMSDEERVLLVCRAKALQRNLPMEVIDAEFQYDRHKLTFYFQADGRIDFRELVRDLFALYKTRIWMQQV 162
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BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: A0A7S2RAB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAB1_9STRA)

HSP 1 Score: 142 bits (357), Expect = 8.730e-32
Identity = 98/241 (40.66%), Postives = 120/241 (49.79%), Query Frame = 1 
Query:  631 GTESCLPGATPDMVVYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQV 1353
            G+E   P    D  VY+VKFKR  R FLL    S G   RGS     +  G  V VEADRGEDLG V   +PL +++     E+ A  A                                                      + +      +  KR++  A E E   L EK  EEEQ+LRVC+ KV+ RSLPM ++DAE+QFDRHKL  FFEAERRIDFRELVRDLF+VYKTRIW+QQ+
Sbjct:  482 GSEPKPPPEDTDGSVYQVKFKRNQRNFLL----SGGNSCRGS-----VTTGSIVVVEADRGEDLGVVVSKMPLEQFV-----EESATTA----------------------------------------------------GHKPRGFGSMFQDTKRVLRLATEEEKVKLREKNEEEEQVLRVCRNKVKQRSLPMYVIDAEYQFDRHKLTFFFEAERRIDFRELVRDLFSVYKTRIWLQQI 656
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BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: A0A6H5K311_9PHAE (PSP1 C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K311_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.910e-30
Identity = 93/243 (38.27%), Postives = 120/243 (49.38%), Query Frame = 1 
Query:  673 VYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDTQPSSGVPTSPF 1401
            VY V+FKR+ R FLL +                + +GD VKVEADRGEDLG V    P+ E    L        A   +  G                                            + E+E            II  A E E+  +++K R+EE++L VC+TKV  RSLPM+++DAEFQ+DRHKL  FFEAE RIDFRELVRDLF++YKTRIWMQQ++  +T PS G    P+
Sbjct:   62 VYHVQFKRSARNFLLAKTCQR-----------DIQVGDYVKVEADRGEDLGMVVTIFPVPEAGRPLP-------ATAGQKRGFG------------------------------------------QFEKEH-----------IIRAATEDEVQMVKDKLRDEERVLEVCRTKVLQRSLPMRVMDAEFQYDRHKLTFFFEAEGRIDFRELVRDLFSLYKTRIWMQQLE-PETTPSGGPMQPPY 232
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BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: A0A835ZJM0_9STRA (PSP1 C-terminal conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJM0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.540e-30
Identity = 95/222 (42.79%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:  676 YEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIW 1341
            Y V+FKR TR FLL         AR  E   +L IGD VKVEADRGEDLG V    PL E   AL+      A +      XXXXXX                                        ERE           RI+  A + E+A L+EK  +EE++L VC+ KV  R LPM+++DAEFQ+DRHKL  +F+A+ RIDFRELVRDLFA+YKTRIW
Sbjct:   14 YTVRFKRGTRAFLL---------ARSCER--SLTIGDYVKVEADRGEDLGVVVAIAPLPEAGAALRPPTAGHAGRXXXXXXXXXXXXG--------------------------------------CERE-----------RILRGATDEEIAVLKEKMADEERVLAVCRAKVVQRGLPMEVMDAEFQYDRHKLTFYFQADGRIDFRELVRDLFALYKTRIW 175
[Close]
BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: A0A7S3DVM7_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DVM7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.990e-29
Identity = 94/237 (39.66%), Postives = 116/237 (48.95%), Query Frame = 1 
Query:  670 VVYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDTQPSS 1380
            VVY VKFKR  R F+LG   +             L IG  VKVEADRGEDLG V   +P  ++  A + +  A        GG                                                          +KRII  A   E++ L  K  EEE++L++C+ KVR R LPM +VDAE+QFDRHKL  FFEAE R+DFRELVRDLF++YKTRIWMQQ+ DK+T  SS
Sbjct:  592 VVYNVKFKRTQRNFVLGPRITR-----------DLKIGTYVKVEADRGEDLGIVIGKVPADKFNFASRTQYTAGMGPPGGMGGSSAAD-----------------------------------------------------LKRIIRLATHDEVSLLGVKRDEEEELLKICRGKVRQRGLPMNVVDAEYQFDRHKLTFFFEAEGRVDFRELVRDLFSMYKTRIWMQQL-DKNTATSS 763
[Close]
BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: A0A7S2EDV8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EDV8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.550e-28
Identity = 93/238 (39.08%), Postives = 116/238 (48.74%), Query Frame = 1 
Query:  670 VVYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDTQPSSG 1383
            VVY VKFKR  R+F+LG+                + IG  VKVEADRGEDLG V   +P +E   A  +         A +G                                                   T       +KRII  A   E++ L  K  EE+++L++C+ KVR R LPM +VDAE+QFDRHKL  FFEAE RIDFRELVRDLF++YKTRIWMQQ+ DK+   S G
Sbjct:  199 VVYNVKFKRTQRSFILGQRIPR-----------DIKIGCYVKVEADRGEDLGIVLSKMP-AEKFNASGRSSFRMGVGSAPSGVSLPGIGEISPSIGGVVPI-------------------------------STTPGGAADLKRIIRLATHDEVSLLVVKREEEDELLKICRAKVRQRGLPMNVVDAEYQFDRHKLTFFFEAEGRIDFRELVRDLFSIYKTRIWMQQL-DKNGVGSGG 392
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BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: A0A418AIP1_9STRA (PSP1 C-terminal domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AIP1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.170e-28
Identity = 81/231 (35.06%), Postives = 110/231 (47.62%), Query Frame = 1 
Query:  676 YEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDT 1368
            YEV+FKR+ + F  G         RG        +GD VKVE DRGED+G V   +     +                                                                 +++  +T     +KRI+  A+E E   L ++ +EE+++L VC+TKVR R LPM ++DAE+QFDRHKL  +FEA+RRIDFRELVRDLFA+YKTRIW+QQV  K +
Sbjct:   18 YEVQFKRSRKDFFAG--------IRGYN------VGDYVKVEGDRGEDVGHVLGVVSFDHSI-----------------------------------------------------------------KKKVDLTHTAMGVKRIMRLASEAECDLLRQQHKEEQEVLHVCRTKVRQRMLPMNVIDAEYQFDRHKLTFYFEADRRIDFRELVRDLFAIYKTRIWLQQVVPKSS 169
[Close]
BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: B8BVJ8_THAPS (PSP1 C-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVJ8_THAPS)

HSP 1 Score: 124 bits (311), Expect = 3.590e-28
Identity = 83/228 (36.40%), Postives = 118/228 (51.75%), Query Frame = 1 
Query:  670 VVYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQV 1353
            +VY VKFKR+ R F+LG+  +             + +G  VKVEADRGEDLG V+  + + +YL + +    +K+     +G                                             E   +  V+     +KRI+  A   E++ LE K  +E+ +L++C+TK   R LPM +VDAE+QFDR+KL  FFEA+ RIDFRELVRDLF++YKTRIWMQQ+
Sbjct:  108 LVYNVKFKRSQRNFILGQRITR-----------DVKLGCYVKVEADRGEDLGIVFSIVSMEKYLASNR----SKSDNDTGSG---------------------------------------------EGPDQPAVSAG--DLKRIMRVATNDEISLLEVKREDEDALLKICRTKAHQRGLPMTVVDAEYQFDRNKLTFFFEADTRIDFRELVRDLFSIYKTRIWMQQL 273
[Close]
BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Match: B5Y510_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y510_PHATC)

HSP 1 Score: 130 bits (326), Expect = 7.100e-28
Identity = 96/245 (39.18%), Postives = 119/245 (48.57%), Query Frame = 1 
Query:  670 VVYEVKFKRATRTFLLGEGFSAGCGARGSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAKIAENGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRNRSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQVKDKDTQPSSG---VPTS 1395
            VVY VKFKR+ R F+LG   S             L IG  VKVEADRGEDLG V   +P   Y  + +    +       + G                                                    +  +  +K II  A   E++ L  K  EEE++L++C+ KVR R LPM +VDAE+QFDRHKL  FFEAE R+DFRELVRDLF++YKTRIWMQQ+ DK T  SS    VPTS
Sbjct:  624 VVYNVKFKRSQRNFVLGPRISR-----------DLKIGTYVKVEADRGEDLGIVVGMVPAERYSFSSRSSFSSGVGPAPSSIG----------------------------------------------------SSNIADLKCIIRLATHDEVSLLTIKRDEEEELLKICRGKVRQRGLPMHVVDAEYQFDRHKLTFFFEAEGRVDFRELVRDLFSMYKTRIWMQQL-DKTTSTSSPAMMVPTS 804
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3475.9265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEP0_ECTSI4.080e-6447.40PSP1 C-terminal domain-containing protein n=2 Tax=... [more]
A0A836CPR8_9STRA1.170e-3240.97PSP1 C-terminal conserved region-domain-containing... [more]
A0A7S2RAB1_9STRA8.730e-3240.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5K311_9PHAE3.910e-3038.27PSP1 C-terminal domain-containing protein n=1 Tax=... [more]
A0A835ZJM0_9STRA4.540e-3042.79PSP1 C-terminal conserved region-domain-containing... [more]
A0A7S3DVM7_9STRA4.990e-2939.66Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S2EDV8_9STRA1.550e-2839.08Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A418AIP1_9STRA3.170e-2835.06PSP1 C-terminal domain-containing protein n=1 Tax=... [more]
B8BVJ8_THAPS3.590e-2836.40PSP1 C-terminal domain-containing protein n=1 Tax=... [more]
B5Y510_PHATC7.100e-2839.18Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3475contigH-paniculata_contig3475:1745..7547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue6.9e-62
Seed eggNOG ortholog2880.D8LEP0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PSP1 C-terminal conserved region
EggNOG OGsCOG1774@1,KOG4679@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1783
Cds size1782
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3475.9265.1prot_H-paniculata_contig3475.9265.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3475 1745..7547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.5017397-CDS-H-paniculata_contig3475:1744..21971622930072.5017397-CDS-H-paniculata_contig3475:1744..2197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 1745..2197 -
1691481135.8339574-CDS-H-paniculata_contig3475:1744..21971691481135.8339574-CDS-H-paniculata_contig3475:1744..2197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 1745..2197 -
1622930072.5263069-CDS-H-paniculata_contig3475:2765..28141622930072.5263069-CDS-H-paniculata_contig3475:2765..2814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 2766..2814 -
1691481135.8458447-CDS-H-paniculata_contig3475:2765..28141691481135.8458447-CDS-H-paniculata_contig3475:2765..2814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 2766..2814 -
1622930072.5474312-CDS-H-paniculata_contig3475:3834..39651622930072.5474312-CDS-H-paniculata_contig3475:3834..3965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 3835..3965 -
1691481135.8554742-CDS-H-paniculata_contig3475:3834..39651691481135.8554742-CDS-H-paniculata_contig3475:3834..3965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 3835..3965 -
1622930073.4066126-CDS-H-paniculata_contig3475:4684..48431622930073.4066126-CDS-H-paniculata_contig3475:4684..4843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 4685..4843 -
1691481135.8651376-CDS-H-paniculata_contig3475:4684..48431691481135.8651376-CDS-H-paniculata_contig3475:4684..4843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 4685..4843 -
1622930073.6318057-CDS-H-paniculata_contig3475:5840..60351622930073.6318057-CDS-H-paniculata_contig3475:5840..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 5841..6035 -
1691481135.8747013-CDS-H-paniculata_contig3475:5840..60351691481135.8747013-CDS-H-paniculata_contig3475:5840..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 5841..6035 -
1622930073.6549194-CDS-H-paniculata_contig3475:6752..75471622930073.6549194-CDS-H-paniculata_contig3475:6752..7547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 6753..7547 -
1691481135.8840864-CDS-H-paniculata_contig3475:6752..75471691481135.8840864-CDS-H-paniculata_contig3475:6752..7547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3475 6753..7547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3475.9265.1

>prot_H-paniculata_contig3475.9265.1 ID=prot_H-paniculata_contig3475.9265.1|Name=mRNA_H-paniculata_contig3475.9265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=594bp
FVPIPEPSVPPGFAMSEAQSRSSPERQRSSMTSVEFSAQGRSASSKISMD
CADDCARRSTVSEQSMQGATVATAAVVQRARVSSGELSEVVSVTVSNPSS
RNAVSPNPQPPAPKNSVEWLQRLQRARRNTPSVITKDSASGSTFSTSCGS
VSSLVPSVASREFATPAPAIGAIAVGGSSCFVSVESVGLAATVRVSPNAF
VATCPAPNCPGTESCLPGATPDMVVYEVKFKRATRTFLLGEGFSAGCGAR
GSEHGATLCIGDRVKVEADRGEDLGTVYRTLPLSEYLVALQKEKLAKAAK
IAENGGGGKGGAGGEGEGGKKKRSKAKKHEEDGGKGASSKTATQQQQQHD
EAEREKTVTCPVRAIKRIIGRANETELAHLEEKTREEEQILRVCQTKVRN
RSLPMKIVDAEFQFDRHKLVLFFEAERRIDFRELVRDLFAVYKTRIWMQQ
VKDKDTQPSSGVPTSPFPDDGSSGITVSDSQPTTTTNTAATTPLSIAAVA
PPSAASRPSAARADVIVSTSPDHHADHDSGYGSSNSGSSNSNSSSRSGGS
DSSGTTREPRVGDVSYLGHDGVLGATVSFDSDDRHAGGGGRGVA
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mRNA from alignment at H-paniculata_contig3475:1745..7547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3475.9265.1 ID=mRNA_H-paniculata_contig3475.9265.1|Name=mRNA_H-paniculata_contig3475.9265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5803bp|location=Sequence derived from alignment at H-paniculata_contig3475:1745..7547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGTACCGATCCCAGAGCCTAGTGTTCCACCAGGTTTTGCGATGTCTGA
GGCGCAATCTCGCTCTTCTCCCGAGCGGCAACGGTCATCCATGACCTCCG
TCGAATTTTCCGCGCAAGGCCGCAGTGCCTCGTCGAAGATCAGCATGGAC
TGCGCGGACGATTGCGCACGGCGATCAACTGTCAGTGAACAGAGTATGCA
GGGAGCGACAGTAGCGACGGCGGCGGTGGTCCAGCGTGCGCGAGTCAGCA
GCGGAGAACTGTCGGAGGTTGTCAGCGTTACGGTATCAAATCCTTCCTCG
CGGAATGCAGTATCGCCAAACCCACAACCACCAGCGCCCAAAAACTCGGT
GGAGTGGCTACAGAGGCTTCAGCGCGCGAGAAGGAACACCCCCTCTGTTA
TCACGAAGGATTCTGCGTCTGGCTCTACCTTTTCTACCTCCTGTGGCTCG
GTGTCGTCTCTGGTGCCCTCTGTAGCCAGCAGGGAGTTCGCAACCCCCGC
CCCCGCCATCGGAGCTATCGCTGTTGGCGGCAGCAGCTGCTTCGTCTCTG
TCGAGTCAGTGGGTTTGGCGGCGACTGTCCGGGTGTCTCCAAACGCGTTT
GTCGCAACGTGCCCGGCCCCTAATTGTCCGGGAACGGAGAGTTGTTTACC
CGGTGCCACGCCGGACATGGTGGTGTACGAGGTTAAGTTCAAGCGCGCGA
CGAGAACGTTTCTACTTGGAGAGGGTTTTAGTGCTGGTTGTGGTGCGAGG
GGAAGCGAGCACGGTGCCACCCTTTGCATTGGTGACCGCGTAAAGGTGAG
CGTGTTGGATTATTAGTATTTGTGTCATGGCGGGATCAATGTTTTCTTGC
GTAAAATTGAATTTGGGCGAGCGAGCGCACAAACGTTTTTGGGGTGCGTG
GTGGGACACGTTGAGCCACATTTAGATGTTTCCATCTTGGGTGAGCATTT
ACTGTAGGGATAATCTCACAGACTCACCCATTTTTGTGCACTAGTGACAT
TGGTGTATAGAAATTGAAAATCCACGCTCGTCCGAGAATTGAGGTATTCA
GGCAATCCATTTGTTCTCAAAACATGGCAAGGAATCTAATAATATCGAGA
ATGTATCCCTTGGGAGAAACGGTAAACAGTATTTTGCTGCGTTTTGCCTT
ATAATTAGTACCTCATTCGTCAAGGCGAGAAAGAAATAAGGTAGATTGTT
GAGGTATAACTTTTGCCGAATGCTAACTTTCTGAAGGAGACCCGATCTTA
TGGACCCACTAGCTCGGCGTGATGGTTGTGGAGAGATGTATGTGACACGC
TGAAACCTTAGCACAATATTGATTATTCCAATGGCAAATGTGAAAGAGCT
TGTTCGGTTTGCCCGTGTACGACCAGGCGTAACCTCACAAATCTAGGCAC
CCTCCCCCAAAGATTCAACGCCGCTCCCCCGGCGACACGGCCGCCCGCTA
TCCCCCTTCCCTTGCCTTGGGCTGCCTACTGCGCCCCTTCCTTCCAAACG
GTTGCATCCCAGGTGGAAGCCGACCGTGGTGAAGATTTGGGAACGGTTTA
CCGCACCCTCCCACTTTCGGAGTACCTTGTGGCGCTGCAAAAAGAGAAGC
TGGCCAAAGCTGCCAAGATAGCAGAGAATGGCGGCGGAGGCAAGGGCGGT
GCCGGCGGGGAGGGTGAAGGTGGAAAGAAGAAGCGCTCCAAGGCTAAGAA
GCATGAGGTATTATCCATATGCGATGTGTACGATGCGTTGGCTTAGTTTT
GGTTTTTGCTCTGGTTTTCCTTCGCTACATACTGTACTATATAGGCATGG
AAGAGTGGATGTCTCAATGACTGCCCCCCTTTACGCGGCGGATTTTGAAC
TGTTTGGATCCGCCCTTGGAAAAACGCGCCTGCCCTTGTATATTTGCTAA
CTAGATAGTTTCTGCAAGATATTCTGCTTCCTTTCCCCTACCCCCGAAGC
GTTACATTTTTAGCCCATAAATTCTTTTTTTCTGTTACGGGATTTCTGGC
CAACATTAGAGGTATTCTCTCGCTGACAGTTGGGCGGGCTTTATCTCGTC
GTGTCGATTTTTGCGTTTCAGTGCTATGGTGGCAGGTTACTACCTCGATC
ATACAGGTAGTTTGTTCACCACGTTTCATTTAAGGATGATGCTACCTAAG
ACCTCCCACGAGAAACGGTTTGATACGTTGCATTCCTTGGCAATAATGGG
ACTAACGTCGACCGTCATCGCGTTAAGTATTATTTGACATGGCCTTGCTC
CGCATTGCGACGTTGAGGTGGCGCATGACATCAACATGATGGCCCTCTTT
AGGCACCCCTTTCGTTGCTTTGATCGTCTCTTCCTGCCATAGAGGGTACT
TCGTTTTTCACACAAGGGTGATGGCTCTTCTGGCACTGGTGATATCTCAT
CGCTATCTTCGAGATTACCAACCAATTATTGTTCAATTAAGCCACCGGAA
GCCTTTACGCACAGATAGACCGAAACAAAACAACAGTTAACGTCAACTGA
GTTGCTGTTGTGAAGATATTTGTGTCGCCGCTCTCAGAAAGTAGCTCCAA
AAGCGAACCTGACGTCTCAAATCGACTTCATCGAAAAGATGCGTCTCGTG
CTTCAAGCCCTCAACGTAGGGCTGGCTAGGTCTTATTTCAGGGTTCGACG
CTGTTATCTCGCCGTTGACCATCACACCATCACCTCTCTCCTTTCTCCTG
CAAGGAGGACGGAGGGAAGGGTGCCTCATCCAAGACTGCGACACAGCAGC
AGCAGCAGCACGACGAGGCAGAGCGAGAAAAGACAGTCACCTGCCCCGTG
AGGGCCATCAAGCGGATCATCGGGAGGGCCAACGAGACAGAGCTCGCCCA
TCTGGAGGAAAAGGTACAGTAATTAAAAATGTTGTAGTGGTGCAATGGTA
CAGTCTGAGAGAACAAATATACTACTGTACAGTTGAAGGATTCATATGTA
AACATAATAACGGCACAGTTAATGGGGGGGGGGGGGTAAATGCGTAGAGG
TGTAACTGTTAGGTTGAATGGAATGAAGGTGTACGAAGCAGTGTTTAACT
ATACCGTACGATATTGTTTTGTTTAGGAACATCTCTATTCGTTGCCTATA
ACGTTCAAGCTTGCTGTGCTCTCACCGCCTAGTTGGAGTTTAACTGGTGT
TTTTTTTTATGTAGTGGCGAATGCAAGGTCCCTATATGGTGAGTCAATGT
CGTATTTGCGTGTCCCAATTTTTGTTGTCTTCCCTCTCTTGCTGCAAGCT
TGTAGATCTTGCCCGTACGACGTCGATACGAAGTGGAGGCATTGCCAAAG
TACGCGATGAAAACGTTCATTATGTCAGCCCGCGCAACGCCCATTATACT
GTTCACTCCCCCTCCCCCCGTTCGCCCAATCACCACATCATATCACCCCA
CAACACGTACCACTATTTTCCCATCAATCGAGGCCATAGCGAACCAGAAT
TTTTACAGGGAAAGCCGACGGTTTGCAGACTACTTCACGCTGTGGTGCAT
GATTGATGGATACATGAATACCCACCAACCATCTACCTCCCTCGCGCTTT
TATGATTCTCACCGCTCGAAATGGTCCGACAGACGCGGGAAGAGGAGCAG
ATACTTCGCGTGTGCCAGACCAAAGTGCGTAACCGCAGCCTTCCCATGAA
GATCGTCGACGCCGAGTTCCAGTTCGATCGACACAAGCTTGTCCTCTTCT
TCGAGGCGGAGAGGTATTGACTGTCGCTGAACAGCGTGCTGCGTGCTGTG
TTCAAATGCGCCGAGCTGAACTGAGTCATGCTAAGAGCTGTGCCGTGCTG
TGCTGTAGTTTCGAGGTCGAATCCCTCAGGTAGCGACAGGATCGTTTCCT
CTTTCGTTCCACAACCCTAAAGTCGCTTCTTCTTTATCAAAGGGTTTGCT
TTCATCTGGGCGTGTGGCACCCGTCTCTAGCTATTATTCATCTCACTGAG
AAAAACTACCACTCTTGGTATATCTGCGGTCCGAGGTCGTTTCCGTACCT
TCAACTTCGCATACCATGGGAGGCGAACGAATTAAATTAGTAGGGCCCCC
CAGTGAAGTCCTCCGATGAAGCCATCCTAAAAAAGGGCACCGCCCGCGTG
GCCACAGAGGGGAATGATCCCATCCTTGATAAGGCAGTGCATTATACTGC
TGAATTCGTGTGAATACCGAATGCCCAATGATAAACAACAAAGTTCACAT
CTCAGAGCACTGTAGCGCTCTGCGAGCTGTAAACTTGCGCGAGACTCACG
TCGTTGGCCGATCGCTCTGTTTCTCTTTTTTTTCCCCCTCTTATCTTATG
CTATTTTTGCATGCGTCCAACGCCAGTCCGGTGACCTTCTCTACTCACCT
CTTTATTGTGTTACCCTTTGACGATCTCCACACGTATTTCTTACGAAAGA
CCCACTATAACACTGCAATTTTCACGTCTGAGAGTACTGTAGCACAGTGC
AAGTTGTAAAATTTATGTTGTTGGCCAATTGATCACCCCCCCCCCCCGAT
CGGTTATCGAAAATTGCTCTGATAGGAACGAAGCTCCGCCCTCCCGAGGA
TGCGCCATTAATGGTCTAACAACAACGACATGCACACATGAGTACGCCCC
CCCTCCCCCTCCTCCCTCTTCCTCTGCGCTATTTTCGCATGCGTCCAACG
CCAGTCCGATGACCTTCTCTTCTCATTCCTCTATTGTTTTTCGCCCTTTG
ACGATCTCCGCATGTACTACAACACCTCCACAGGCGCATAGATTTCCGCG
AGCTGGTCCGCGACTTGTTCGCCGTTTACAAGGTGAGTTTCTCGGTCAAC
GTTACAGTAGTGGCAGAGCTATGCTGAAGTGGGCCTCTCATATATTTTTC
ACCTATAGAGCATGCGACGGTTTCAGGGCTAGGGTTATTTAGGGTCGTTC
CAATCGTTGCCCTTTTCTCTGTTTTTTTCGATTTTCATCGTTCACGTTTT
TTTCGCTCTTGAGAAAATCGGGAGTGAACAACAAGGACTACATTTCCGAA
CCTGTTAGCTCCCTAGTTCCAAATTTCCATTTTCTAAAGGAAAAGATAGG
GTTCCGATTGTCTGGTGAAATTGAGAAAAGCCGGATACCGAAGAGCTGTA
TCGTTCAAACCAGAACCAATAGGGCTGAGGTTAGGATAATGCTTTGATTT
TTCCTTACTCTACGGTAGAAACATATGACCATATGTTTGGGTCACCCACC
GATGCCTCGGAAATATGCGTTTGATATCACGGTGTAGCATAATACATGAG
CCTTGGAGAGTTGTGTCGTAGCACCCCACCTTATCCTCCCCCTACCCCCC
CTACCGTTCACCCTCCCTGTTTTAACCTACCACTGCTAATTGTCCGCCAG
ACACGCATCTGGATGCAGCAGGTGAAGGATAAAGATACACAACCTTCCTC
CGGTGTCCCCACATCTCCTTTCCCGGACGATGGCAGCAGCGGCATCACCG
TAAGCGATAGTCAGCCCACCACCACCACCAACACCGCTGCCACCACACCG
CTTTCCATCGCTGCCGTCGCTCCCCCATCAGCTGCATCGCGACCGTCCGC
AGCAAGGGCGGATGTTATAGTTAGTACTTCGCCGGATCACCACGCTGACC
ACGACTCGGGATACGGTAGCAGTAACAGCGGGAGCAGCAACAGCAACAGC
AGCAGCAGAAGCGGTGGTAGCGACAGCTCCGGTACGACCCGTGAGCCCCG
AGTCGGAGATGTCTCTTACCTGGGACATGATGGCGTGCTCGGAGCTACCG
TGAGCTTCGATAGTGACGATCGTCACGCGGGCGGAGGAGGGCGGGGTGTG
GCT
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Coding sequence (CDS) from alignment at H-paniculata_contig3475:1745..7547-

>mRNA_H-paniculata_contig3475.9265.1 ID=mRNA_H-paniculata_contig3475.9265.1|Name=mRNA_H-paniculata_contig3475.9265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3564bp|location=Sequence derived from alignment at H-paniculata_contig3475:1745..7547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGTACCGATCCCAGAGCCTAGTGTTCCACCAGGTTTTGCGATGTCTGA
GGCGCAATCTCGCTCTTCTCCCGAGCGGCAACGGTCATCCATGACCTCCG
TCGAATTTTCCGCGCAAGGCCGCAGTGCCTCGTCGAAGATCAGCATGGAC
TGCGCGGACGATTGCGCACGGCGATCAACTGTCAGTGAACAGAGTATGCA
GGGAGCGACAGTAGCGACGGCGGCGGTGGTCCAGCGTGCGCGAGTCAGCA
GCGGAGAACTGTCGGAGGTTGTCAGCGTTACGGTATCAAATCCTTCCTCG
CGGAATGCAGTATCGCCAAACCCACAACCACCAGCGCCCAAAAACTCGGT
GGAGTGGCTACAGAGGCTTCAGCGCGCGAGAAGGAACACCCCCTCTGTTA
TCACGAAGGATTCTGCGTCTGGCTCTACCTTTTCTACCTCCTGTGGCTCG
GTGTCGTCTCTGGTGCCCTCTGTAGCCAGCAGGGAGTTCGCAACCCCCGC
CCCCGCCATCGGAGCTATCGCTGTTGGCGGCAGCAGCTGCTTCGTCTCTG
TCGAGTCAGTGGGTTTGGCGGCGACTGTCCGGGTGTCTCCAAACGCGTTT
GTCGCAACGTGCCCGGCCCCTAATTGTCCGGGAACGGAGAGTTGTTTACC
CGGTGCCACGCCGGACATGGTGGTGTACGAGGTTAAGTTCAAGCGCGCGA
CGAGAACGTTTCTACTTGGAGAGGGTTTTAGTGCTGGTTGTGGTGCGAGG
GGAAGCGAGCACGGTGCCACCCTTTGCATTGGTGACCGCGTAAAGTTCGT
ACCGATCCCAGAGCCTAGTGTTCCACCAGGTTTTGCGATGTCTGAGGCGC
AATCTCGCTCTTCTCCCGAGCGGCAACGGTCATCCATGACCTCCGTCGAA
TTTTCCGCGCAAGGCCGCAGTGCCTCGTCGAAGATCAGCATGGACTGCGC
GGACGATTGCGCACGGCGATCAACTGTCAGTGAACAGAGTATGCAGGGAG
CGACAGTAGCGACGGCGGCGGTGGTCCAGCGTGCGCGAGTCAGCAGCGGA
GAACTGTCGGAGGTTGTCAGCGTTACGGTATCAAATCCTTCCTCGCGGAA
TGCAGTATCGCCAAACCCACAACCACCAGCGCCCAAAAACTCGGTGGAGT
GGCTACAGAGGCTTCAGCGCGCGAGAAGGAACACCCCCTCTGTTATCACG
AAGGATTCTGCGTCTGGCTCTACCTTTTCTACCTCCTGTGGCTCGGTGTC
GTCTCTGGTGCCCTCTGTAGCCAGCAGGGAGTTCGCAACCCCCGCCCCCG
CCATCGGAGCTATCGCTGTTGGCGGCAGCAGCTGCTTCGTCTCTGTCGAG
TCAGTGGGTTTGGCGGCGACTGTCCGGGTGTCTCCAAACGCGTTTGTCGC
AACGTGCCCGGCCCCTAATTGTCCGGGAACGGAGAGTTGTTTACCCGGTG
CCACGCCGGACATGGTGGTGTACGAGGTTAAGTTCAAGCGCGCGACGAGA
ACGTTTCTACTTGGAGAGGGTTTTAGTGCTGGTTGTGGTGCGAGGGGAAG
CGAGCACGGTGCCACCCTTTGCATTGGTGACCGCGTAAAGGTGGAAGCCG
ACCGTGGTGAAGATTTGGGAACGGTTTACCGCACCCTCCCACTTTCGGAG
TACCTTGTGGCGCTGCAAAAAGAGAAGCTGGCCAAAGCTGCCAAGATAGC
AGAGAATGGCGGCGGAGGCAAGGGCGGTGCCGGCGGGGAGGGTGAAGGTG
GAAAGAAGAAGCGCTCCAAGGCTAAGAAGCATGAGGTGGAAGCCGACCGT
GGTGAAGATTTGGGAACGGTTTACCGCACCCTCCCACTTTCGGAGTACCT
TGTGGCGCTGCAAAAAGAGAAGCTGGCCAAAGCTGCCAAGATAGCAGAGA
ATGGCGGCGGAGGCAAGGGCGGTGCCGGCGGGGAGGGTGAAGGTGGAAAG
AAGAAGCGCTCCAAGGCTAAGAAGCATGAGGAGGACGGAGGGAAGGGTGC
CTCATCCAAGACTGCGACACAGCAGCAGCAGCAGCACGACGAGGCAGAGC
GAGAAAAGACAGTCACCTGCCCCGTGAGGGCCATCAAGCGGATCATCGGG
AGGGCCAACGAGACAGAGCTCGCCCATCTGGAGGAAAAGGAGGACGGAGG
GAAGGGTGCCTCATCCAAGACTGCGACACAGCAGCAGCAGCAGCACGACG
AGGCAGAGCGAGAAAAGACAGTCACCTGCCCCGTGAGGGCCATCAAGCGG
ATCATCGGGAGGGCCAACGAGACAGAGCTCGCCCATCTGGAGGAAAAGAC
GCGGGAAGAGGAGCAGATACTTCGCGTGTGCCAGACCAAAGTGCGTAACC
GCAGCCTTCCCATGAAGATCGTCGACGCCGAGTTCCAGTTCGATCGACAC
AAGCTTGTCCTCTTCTTCGAGGCGGAGAGACGCGGGAAGAGGAGCAGATA
CTTCGCGTGTGCCAGACCAAAGTGCGTAACCGCAGCCTTCCCATGAAGAT
CGTCGACGCCGAGTTCCAGTTCGATCGACACAAGCTTGTCCTCTTCTTCG
AGGCGGAGAGGCGCATAGATTTCCGCGAGCTGGTCCGCGACTTGTTCGCC
GTTTACAAGGCGCATAGATTTCCGCGAGCTGGTCCGCGACTTGTTCGCCG
TTTACAAGACACGCATCTGGATGCAGCAGGTGAAGGATAAAGATACACAA
CCTTCCTCCGGTGTCCCCACATCTCCTTTCCCGGACGATGGCAGCAGCGG
CATCACCGTAAGCGATAGTCAGCCCACCACCACCACCAACACCGCTGCCA
CCACACCGCTTTCCATCGCTGCCGTCGCTCCCCCATCAGCTGCATCGCGA
CCGTCCGCAGCAAGGGCGGATGTTATAGTTAGTACTTCGCCGGATCACCA
CGCTGACCACGACTCGGGATACGGTAGCAGTAACAGCGGGAGCAGCAACA
GCAACAGCAGCAGCAGAAGCGGTGGTAGCGACAGCTCCGGTACGACCCGT
GAGCCCCGAGTCGGAGATGTCTCTTACCTGGGACATGATGGCGTGCTCGG
AGCTACCGTGAGCTTCGATAGTGACGATCGTCACGCGGGCGGAGGAGGGC
GGGGTGTGGCTACACGCATCTGGATGCAGCAGGTGAAGGATAAAGATACA
CAACCTTCCTCCGGTGTCCCCACATCTCCTTTCCCGGACGATGGCAGCAG
CGGCATCACCGTAAGCGATAGTCAGCCCACCACCACCACCAACACCGCTG
CCACCACACCGCTTTCCATCGCTGCCGTCGCTCCCCCATCAGCTGCATCG
CGACCGTCCGCAGCAAGGGCGGATGTTATAGTTAGTACTTCGCCGGATCA
CCACGCTGACCACGACTCGGGATACGGTAGCAGTAACAGCGGGAGCAGCA
ACAGCAACAGCAGCAGCAGAAGCGGTGGTAGCGACAGCTCCGGTACGACC
CGTGAGCCCCGAGTCGGAGATGTCTCTTACCTGGGACATGATGGCGTGCT
CGGAGCTACCGTGAGCTTCGATAGTGACGATCGTCACGCGGGCGGAGGAG
GGCGGGGTGTGGCT
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