mRNA_H-paniculata_contig34740.9264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34740.9264.1
Unique NamemRNA_H-paniculata_contig34740.9264.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.130e-47
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = 1
Query:   70 QAYRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            +AYR +VR+D RFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSW Q TRLNLPAWLGV +ALS +AS+ DG+  L  MY++WPFFATN+
Sbjct:  731 EAYRDIVRRDERFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWTQ-TRLNLPAWLGVADALSELASTDDGKATLRSMYDEWPFFATNI 830          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA)

HSP 1 Score: 168 bits (425), Expect = 6.660e-46
Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 1
Query:   52 LLAWRLQAYRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            L A   +AYR +VR+DPRFVPY RTATPELELG+LNIGSRPAKRRPTGGVE+LRAIPWVFSW Q TRLNLPAWLGVG+AL+ +AS+ +G+  L  MYE WPFFATN+
Sbjct:  724 LSAVSCEAYRGIVRKDPRFVPYLRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQ-TRLNLPAWLGVGDALADVASTAEGKADLRGMYEDWPFFATNI 829          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.700e-45
Identity = 77/101 (76.24%), Postives = 91/101 (90.10%), Query Frame = 1
Query:   70 QAYRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            +AYR +VR+D RFVPYFRTATPELELG+LNIGSRPAKRRPTGGVE+LRAIPWVFSW Q TRLNLPAWLGVG+AL+++AS+ +G+  L  MYE+WPFF TN+
Sbjct:  730 EAYREIVRKDARFVPYFRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQ-TRLNLPAWLGVGDALAAVASTPEGKADLRNMYEQWPFFETNI 829          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 2.070e-44
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:   73 AYRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            AYR +VR+DPRFVPYFRTATPELELG LNIGSRPAKRRPTGGVE+LRAIPWVFSW Q TRLNLPAWLGVG+AL+++AS+++G   L  MY  WPFF TN+
Sbjct:  731 AYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQ-TRLNLPAWLGVGDALAAVASTKEGVENLSTMYATWPFFKTNI 829          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A4D9DCS6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCS6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.630e-41
Identity = 72/99 (72.73%), Postives = 79/99 (79.80%), Query Frame = 1
Query:   76 YRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            YR+ VRQDPRFVPYFR ATPE ELGS NIGSRP KRRP GGVETLRAIPWVFSW Q TRL+L AWLGVGEAL ++ +S +    L EMY+ WPF  TNM
Sbjct:   12 YRATVRQDPRFVPYFRAATPEQELGSANIGSRPQKRRP-GGVETLRAIPWVFSWTQ-TRLHLSAWLGVGEALEAVMASPEHASTLAEMYKHWPFLHTNM 108          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.700e-40
Identity = 72/99 (72.73%), Postives = 84/99 (84.85%), Query Frame = 1
Query:   76 YRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            YR++VR DP+FV YFR +TPELELG+LNIGSRPAKRRPTGGVETLRAIPWVF+W Q TRLNLPAWLGVG+ALS++A     +  L EMY +WPFF TN+
Sbjct:  695 YRNIVRHDPKFVGYFRASTPELELGALNIGSRPAKRRPTGGVETLRAIPWVFAWTQ-TRLNLPAWLGVGDALSAVAKKD--KATLQEMYAQWPFFRTNI 790          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A448ZPD7_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPD7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.140e-39
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   73 AYRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            AYRS+V +DPRFVPYFR+ATPELEL +LNIGSRPAKR+PTGGVE+LRAIPW FSW Q TRLNLP WLGVGEA   + +S DG+  L EMY +WP F T +
Sbjct:  771 AYRSIVSEDPRFVPYFRSATPELELSNLNIGSRPAKRKPTGGVESLRAIPWNFSWTQ-TRLNLPTWLGVGEAFEKILASDDGD-KLREMYREWPSFRTTV 868          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A7S2YQX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQX4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.100e-38
Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = 1
Query:   73 AYRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFF 360
            +YRSVVR D RFVPYFR+ATPELEL +LNIGSRPAKR+ TGGVE+LRAIPW F+W Q TR NLP+WLGVG+ALS +  S+D    LH+MYE W  F
Sbjct:  108 SYRSVVRGDERFVPYFRSATPELELSNLNIGSRPAKRKATGGVESLRAIPWNFAWTQ-TRSNLPSWLGVGDALSEVLESEDSA-TLHDMYENWGSF 201          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: W7TGA1_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGA1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.370e-38
Identity = 72/99 (72.73%), Postives = 79/99 (79.80%), Query Frame = 1
Query:   76 YRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFATNM 372
            YR+ VRQDPRFVPYFR ATPE ELGS NIGSRP KRRP GGVETLRAIPWVFSW Q TRL+L AWLGVGEAL ++ +S +    L EMY+ WPF  TNM
Sbjct:  745 YRATVRQDPRFVPYFRAATPEQELGSANIGSRPQKRRP-GGVETLRAIPWVFSWTQ-TRLHLSAWLGVGEALEAVMASPEHASTLAEMYKHWPFLHTNM 841          
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Match: A0A7S3H8Y1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Y1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.630e-38
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   73 AYRSVVRQDPRFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSMASSQDGEGVLHEMYEKWPFFAT 366
            AYR++VR+DPRFVPYFRT TPELEL  LN+GSRP KR P GGVE+LRAIPWVF+W Q TRLNLP WLGVGEAL+    +     +L EMY+ WP+F T
Sbjct:  213 AYRAIVREDPRFVPYFRTTTPELELAGLNVGSRPGKRNPKGGVESLRAIPWVFAWTQ-TRLNLPTWLGVGEALNKELKTDPA--LLKEMYQDWPWFRT 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34740.9264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUD4_9PHAE2.130e-4779.21Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum ... [more]
A0A0A0V6T3_SACJA6.660e-4674.77Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina... [more]
A0A097IUC8_9PHAE1.700e-4576.24Phosphoenolpyruvate carboxylase n=2 Tax=Scytosipho... [more]
D8LTN1_ECTSI2.070e-4477.00Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus... [more]
A0A4D9DCS6_9STRA2.630e-4172.73Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YNR8_9STRA1.700e-4072.73Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema ... [more]
A0A448ZPD7_9STRA2.140e-3971.00Phosphoenolpyruvate carboxylase n=1 Tax=Pseudo-nit... [more]
A0A7S2YQX4_9STRA2.100e-3869.79Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
W7TGA1_9STRA6.370e-3872.73Phosphoenolpyruvate carboxylase n=1 Tax=Nannochlor... [more]
A0A7S3H8Y1_9STRA7.630e-3867.35Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34740contigH-paniculata_contig34740:1096..2176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue3.3e-38
Seed eggNOG ortholog2880.D8LTN1
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.phosphoenolpyruvate carboxylase activity
EggNOG OGs2QPVS@2759,COG2352@1
EC4.1.1.31
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930072.2500396-CDS-H-paniculata_contig34740:1095..13381622930072.2500396-CDS-H-paniculata_contig34740:1095..1338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34740 1096..1338 +
1691481135.7602117-CDS-H-paniculata_contig34740:1095..13381691481135.7602117-CDS-H-paniculata_contig34740:1095..1338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34740 1096..1338 +
1622930072.2728403-CDS-H-paniculata_contig34740:2044..21761622930072.2728403-CDS-H-paniculata_contig34740:2044..2176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34740 2045..2176 +
1691481135.777514-CDS-H-paniculata_contig34740:2044..21761691481135.777514-CDS-H-paniculata_contig34740:2044..2176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34740 2045..2176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34740.9264.1prot_H-paniculata_contig34740.9264.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34740 1096..2176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34740.9264.1

>prot_H-paniculata_contig34740.9264.1 ID=prot_H-paniculata_contig34740.9264.1|Name=mRNA_H-paniculata_contig34740.9264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
PPLSSTLTFTAVLCPTILLAWRLQAYRSVVRQDPRFVPYFRTATPELELG
SLNIGSRPAKRRPTGGVETLRAIPWVFSWAQQTRLNLPAWLGVGEALSSM
ASSQDGEGVLHEMYEKWPFFATNMG
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mRNA from alignment at H-paniculata_contig34740:1096..2176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34740.9264.1 ID=mRNA_H-paniculata_contig34740.9264.1|Name=mRNA_H-paniculata_contig34740.9264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-paniculata_contig34740:1096..2176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCTTGTCTTCGACGCTCACCTTCACTGCTGTACTTTGCCCTACCAT ACTCTTGGCCTGGCGGCTCCAGGCCTACCGTTCGGTGGTAAGGCAAGATC CTCGCTTTGTGCCATACTTCAGGACAGCCACTCCCGAGTTGGAGCTGGGA TCCCTTAACATTGGCTCGCGTCCAGCTAAGAGGAGGCCAACCGGTGGAGT GGAAACCCTTCGCGCTATTCCATGGGTGTTCTCGTGGGCACAGGTGAGAG GGACGACGCTGGCTGTCTGGGATTCACTGAAATTTTCGGAATAATTCGTA GTGCTGGTCATGTAGAAAATATCATTTTCTCATTTTGCTTTGTCTCGCGT CTTTTCACTCTGAATACGAGATTGGGTTTGTTCGCGTTTTTTTTTTTTTA ATGTTACAAATATTATTGTGTAGGTGGTGAAATTGTGGCATCCGCAATAA GATATAAAGTCAAGAAATTTTAACCTAAGCAAAAATATGAATATTTGCAA ATGTTTTTCACATAGGGGTGGGTACTTATTCATGTGTCCGCTCATTCTGA AACTCCGGTGAACACTTTCAGTTTTTGGTGGAAACAATTTTCAAGTATTC GTATTTTTCCGGGGGGTGGAAAATTTGAACATTTTCATCGTTTTTTGGTC CTTGACATCCTGCGGCGCACAGTACCGTTCATACTTCTTCAAAATTCAAT GTGATGCGTCACTGGAATCCCTCAAGCCAACGGTCAGAGGGTAGCAGAAC GAATGGCGGGTGCAAAGCGGCAAGCGCCGCGCACAGCAGAGCGCGGAGGC GTGGTGTACATGCGTTCTAGCTTATGATCTACTTTGACCGCCAACGGCAT CCATTTACTTCCAAATCAAGCGTGATGTCGCTCTTCTCCTTTCATCAATA CGCACGACTTAGGCCGTTTGTCATGCCTACCAAAAAAATCCCTCACGAGC AGACCCGACTCAACCTTCCGGCGTGGCTTGGCGTGGGTGAAGCATTGTCG TCGATGGCCTCCAGCCAAGACGGCGAAGGGGTCCTGCATGAGATGTACGA GAAATGGCCGTTCTTCGCTACCAACATGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig34740:1096..2176+

>mRNA_H-paniculata_contig34740.9264.1 ID=mRNA_H-paniculata_contig34740.9264.1|Name=mRNA_H-paniculata_contig34740.9264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig34740:1096..2176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCTTGTCTTCGACGCTCACCTTCACTGCTGTACTTTGCCCTACCAT
ACTCTTGGCCTGGCGGCTCCAGGCCTACCGTTCGGTGGTAAGGCAAGATC
CTCGCTTTGTGCCATACTTCAGGACAGCCACTCCCGAGTTGGAGCTGGGA
TCCCTTAACATTGGCTCGCGTCCAGCTAAGAGGAGGCCAACCGGTGGAGT
GGAAACCCTTCGCGCTATTCCATGGGTGTTCTCGTGGGCACAGCCACCCT
TGTCTTCGACGCTCACCTTCACTGCTGTACTTTGCCCTACCATACTCTTG
GCCTGGCGGCTCCAGGCCTACCGTTCGGTGGTAAGGCAAGATCCTCGCTT
TGTGCCATACTTCAGGACAGCCACTCCCGAGTTGGAGCTGGGATCCCTTA
ACATTGGCTCGCGTCCAGCTAAGAGGAGGCCAACCGGTGGAGTGGAAACC
CTTCGCGCTATTCCATGGGTGTTCTCGTGGGCACAGCAGACCCGACTCAA
CCTTCCGGCGTGGCTTGGCGTGGGTGAAGCATTGTCGTCGATGGCCTCCA
GCCAAGACGGCGAAGGGGTCCTGCATGAGATGTACGAGAAATGGCCGTTC
TTCGCTACCAACATGGGTCAGACCCGACTCAACCTTCCGGCGTGGCTTGG
CGTGGGTGAAGCATTGTCGTCGATGGCCTCCAGCCAAGACGGCGAAGGGG
TCCTGCATGAGATGTACGAGAAATGGCCGTTCTTCGCTACCAACATGGGT
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