mRNA_H-paniculata_contig34727.9260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 5.840e-10 Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
+ ENQMVSAER+L YCKV QEASLES P KP WPAKG+I
Sbjct: 41 EVENQMVSAERVLGYCKVPQEASLESEPGCKPADGWPAKGDI 82
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 6.230e-10 Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1
Query: 43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
+ ENQMVSAER+L+YC+V QEASLES P KP WP+KGNI
Sbjct: 1056 EVENQMVSAERVLSYCRVPQEASLESDPGYKPADGWPSKGNI 1097
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI000771C577 (probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771C577) HSP 1 Score: 62.0 bits (149), Expect = 8.520e-10 Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 4 LIRVLGGGMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
L +L G+ + ENQM S ERIL YCK++QE LESTP++KPN +WP +G +
Sbjct: 983 LTGILQWGIRQVAVVENQMTSTERILEYCKLEQEPPLESTPDNKPNENWPTEGRV 1037
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 1.170e-9 Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1
Query: 43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
+ ENQMVS ER+L+YC+V QEASLES P +P+ WPAKGNI
Sbjct: 1137 EVENQMVSVERVLSYCRVPQEASLESEPGYQPSDGWPAKGNI 1178
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 1.590e-9 Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
+ ENQMVSAER+L YC+V QEASLES P KP WPAKG+I
Sbjct: 1157 EVENQMVSAERVLGYCRVPQEASLESEPGCKPADGWPAKGDI 1198
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI000625D44C (probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000625D44C) HSP 1 Score: 60.5 bits (145), Expect = 2.980e-9 Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 4 LIRVLGGGMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
L +L G+ + + ENQM S ER+L Y K++QE SLESTPE+KP +WP++G I
Sbjct: 984 LTGMLQWGVRQTAEMENQMTSVERVLEYSKLEQEPSLESTPENKPPKEWPSQGKI 1038
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 1.420e-8 Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
+ ENQMVSAER+L+YC+V QEA+L S P KP WPA+GNI
Sbjct: 1106 EVENQMVSAERVLSYCRVPQEAALASEPVYKPADGWPAEGNI 1147
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI001CA967D5 (ATP-binding cassette subfamily C member 4-like n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA967D5) HSP 1 Score: 57.8 bits (138), Expect = 2.660e-8 Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 4 LIRVLGGGMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
L +L G + + EN M S ERI+ YC ++QEA+LE+ PE+KP +DWP +G++
Sbjct: 969 LASMLQWGFKQTTEIENLMTSVERIMEYCDLEQEAALETKPENKPPVDWPKEGSV 1023
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI00143DE1EA (multidrug resistance-associated protein 4-like isoform X1 n=2 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DE1EA) HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7 Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1
Query: 25 GMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
GM + + ENQM S ER+L Y ++ E +LES+P+ KPN DWP +G +
Sbjct: 1072 GMRQSAELENQMTSVERVLEYSNIESEPALESSPDKKPNDDWPHEGKV 1119
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: A0A7S4DD06_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD06_HETAK) HSP 1 Score: 54.7 bits (130), Expect = 3.170e-7 Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1
Query: 43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
+ ENQMVS ER+LAYC+ QE LES P P DWP +G I
Sbjct: 60 EVENQMVSVERVLAYCRAPQEPPLESAPGKAPPADWPQRGEI 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34727.9260.1 >prot_H-paniculata_contig34727.9260.1 ID=prot_H-paniculata_contig34727.9260.1|Name=mRNA_H-paniculata_contig34727.9260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp MGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNIKback to top mRNA from alignment at H-paniculata_contig34727:312..482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34727.9260.1 ID=mRNA_H-paniculata_contig34727.9260.1|Name=mRNA_H-paniculata_contig34727.9260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig34727:312..482+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34727:312..482+ >mRNA_H-paniculata_contig34727.9260.1 ID=mRNA_H-paniculata_contig34727.9260.1|Name=mRNA_H-paniculata_contig34727.9260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig34727:312..482+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |