mRNA_H-paniculata_contig34727.9260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34727.9260.1
Unique NamemRNA_H-paniculata_contig34727.9260.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.840e-10
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            + ENQMVSAER+L YCKV QEASLES P  KP   WPAKG+I
Sbjct:   41 EVENQMVSAERVLGYCKVPQEASLESEPGCKPADGWPAKGDI 82          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.230e-10
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            + ENQMVSAER+L+YC+V QEASLES P  KP   WP+KGNI
Sbjct: 1056 EVENQMVSAERVLSYCRVPQEASLESDPGYKPADGWPSKGNI 1097          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI000771C577 (probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771C577)

HSP 1 Score: 62.0 bits (149), Expect = 8.520e-10
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 LIRVLGGGMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            L  +L  G+ +    ENQM S ERIL YCK++QE  LESTP++KPN +WP +G +
Sbjct:  983 LTGILQWGIRQVAVVENQMTSTERILEYCKLEQEPPLESTPDNKPNENWPTEGRV 1037          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.170e-9
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            + ENQMVS ER+L+YC+V QEASLES P  +P+  WPAKGNI
Sbjct: 1137 EVENQMVSVERVLSYCRVPQEASLESEPGYQPSDGWPAKGNI 1178          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.590e-9
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            + ENQMVSAER+L YC+V QEASLES P  KP   WPAKG+I
Sbjct: 1157 EVENQMVSAERVLGYCRVPQEASLESEPGCKPADGWPAKGDI 1198          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI000625D44C (probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000625D44C)

HSP 1 Score: 60.5 bits (145), Expect = 2.980e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    4 LIRVLGGGMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            L  +L  G+ +  + ENQM S ER+L Y K++QE SLESTPE+KP  +WP++G I
Sbjct:  984 LTGMLQWGVRQTAEMENQMTSVERVLEYSKLEQEPSLESTPENKPPKEWPSQGKI 1038          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            + ENQMVSAER+L+YC+V QEA+L S P  KP   WPA+GNI
Sbjct: 1106 EVENQMVSAERVLSYCRVPQEAALASEPVYKPADGWPAEGNI 1147          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI001CA967D5 (ATP-binding cassette subfamily C member 4-like n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA967D5)

HSP 1 Score: 57.8 bits (138), Expect = 2.660e-8
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 LIRVLGGGMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            L  +L  G  +  + EN M S ERI+ YC ++QEA+LE+ PE+KP +DWP +G++
Sbjct:  969 LASMLQWGFKQTTEIENLMTSVERIMEYCDLEQEAALETKPENKPPVDWPKEGSV 1023          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: UPI00143DE1EA (multidrug resistance-associated protein 4-like isoform X1 n=2 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DE1EA)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   25 GMGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            GM +  + ENQM S ER+L Y  ++ E +LES+P+ KPN DWP +G +
Sbjct: 1072 GMRQSAELENQMTSVERVLEYSNIESEPALESSPDKKPNDDWPHEGKV 1119          
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Match: A0A7S4DD06_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD06_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 3.170e-7
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   43 QTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNI 168
            + ENQMVS ER+LAYC+  QE  LES P   P  DWP +G I
Sbjct:   60 EVENQMVSVERVLAYCRAPQEPPLESAPGKAPPADWPQRGEI 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34727.9260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LSW5_ECTSI5.840e-1071.43ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6H5JDL0_9PHAE6.230e-1069.05ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
UPI000771C5778.520e-1050.91probable multidrug resistance-associated protein l... [more]
D8LSW4_ECTSI1.170e-966.67Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDN6_9PHAE1.590e-969.05ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
UPI000625D44C2.980e-950.91probable multidrug resistance-associated protein l... [more]
D8LSW3_ECTSI1.420e-864.29Multidrug resistance-associated protein-like prote... [more]
UPI001CA967D52.660e-845.45ATP-binding cassette subfamily C member 4-like n=1... [more]
UPI00143DE1EA1.270e-747.92multidrug resistance-associated protein 4-like iso... [more]
A0A7S4DD06_HETAK3.170e-757.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34727contigH-paniculata_contig34727:312..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue5.1e-08
Seed eggNOG ortholog2880.D8LSW5
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size171
Cds size144
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.6109862-UTR-H-paniculata_contig34727:311..3381622930071.6109862-UTR-H-paniculata_contig34727:311..338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34727 312..338 +
1691481135.461463-UTR-H-paniculata_contig34727:311..3381691481135.461463-UTR-H-paniculata_contig34727:311..338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34727 312..338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.623629-CDS-H-paniculata_contig34727:338..4821622930071.623629-CDS-H-paniculata_contig34727:338..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34727 339..482 +
1691481135.4737024-CDS-H-paniculata_contig34727:338..4821691481135.4737024-CDS-H-paniculata_contig34727:338..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34727 339..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34727.9260.1prot_H-paniculata_contig34727.9260.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34727 339..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34727.9260.1

>prot_H-paniculata_contig34727.9260.1 ID=prot_H-paniculata_contig34727.9260.1|Name=mRNA_H-paniculata_contig34727.9260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MGKRLQTENQMVSAERILAYCKVDQEASLESTPEDKPNMDWPAKGNIK
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mRNA from alignment at H-paniculata_contig34727:312..482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34727.9260.1 ID=mRNA_H-paniculata_contig34727.9260.1|Name=mRNA_H-paniculata_contig34727.9260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig34727:312..482+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACTAATACGAGTTCTTGGTGGGGGGATGGGGAAACGCTTACAGACTGA AAATCAGATGGTGTCTGCCGAGCGCATTCTGGCGTATTGCAAGGTGGATC AAGAAGCTAGCCTGGAATCCACACCGGAGGACAAGCCAAACATGGATTGG CCTGCCAAGGGTAACATAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34727:312..482+

>mRNA_H-paniculata_contig34727.9260.1 ID=mRNA_H-paniculata_contig34727.9260.1|Name=mRNA_H-paniculata_contig34727.9260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig34727:312..482+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAACGCTTACAGACTGAAAATCAGATGGTGTCTGCCGAGCGCAT
TCTGGCGTATTGCAAGGTGGATCAAGAAGCTAGCCTGGAATCCACACCGG
AGGACAAGCCAAACATGGATTGGCCTGCCAAGGGTAACATAAAGATGGGG
AAACGCTTACAGACTGAAAATCAGATGGTGTCTGCCGAGCGCATTCTGGC
GTATTGCAAGGTGGATCAAGAAGCTAGCCTGGAATCCACACCGGAGGACA
AGCCAAACATGGATTGGCCTGCCAAGGGTAACATAAAG
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