mRNA_H-paniculata_contig3472.9258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3472.9258.1
Unique NamemRNA_H-paniculata_contig3472.9258.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A6H5L3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y1_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 7.250e-111
Identity = 186/249 (74.70%), Postives = 201/249 (80.72%), Query Frame = 1 
Query:    4 EVMSLLPPDLPVKTLAPFLSSAVRHAEARRRSNQVMHQLCRADYVNVKFELIQLQGQVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFTSVRASLSG----GLGETGIDQG--FLEEYVLEDLEMSATDLGE 732
            +VM+LLPP +PV  L PFLSSAVRHAEARRRSNQV HQLCRADYVNVKFELIQLQGQVSRVPELSLASFP+LGTLLRTCPPV+LTDP+ADYGV CIKHVFESF+VLQFDV+N L+DQRLHNVLVKVECSDPDLYSIKTERH PALPPHGSGSCYTVL RS           STS    VG G VGG  GG    PSVLFMCELRFTS R    G    G+ E+  D+G  F+EEY+LEDLE+S  DLGE
Sbjct:  526 KVMALLPPSVPVAKLLPFLSSAVRHAEARRRSNQVTHQLCRADYVNVKFELIQLQGQVSRVPELSLASFPQLGTLLRTCPPVELTDPTADYGVGCIKHVFESFIVLQFDVTNRLRDQRLHNVLVKVECSDPDLYSIKTERHFPALPPHGSGSCYTVLSRSP----------STSG---VGRGSVGGIGGG----PSVLFMCELRFTSARIGSGGAQGIGMAESAYDKGGGFMEEYLLEDLELSPADLGE 757
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BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 3.130e-107
Identity = 183/249 (73.49%), Postives = 200/249 (80.32%), Query Frame = 1 
Query:    4 EVMSLLPPDLPVKTLAPFLSSAVRHAEARRRSNQVMHQLCRADYVNVKFELIQLQGQVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFTSVRASLSG----GLGETGIDQG--FLEEYVLEDLEMSATDLGE 732
            +VM+LLPP +PV  L PFLSSAVRHAEARRRSNQV HQLCRADYVNVKFELIQLQGQVSRVPELSLASFP+LGTLLRTCPPV+LTDP+ADYGV CIKHVFESF+VLQFDV+N L+DQRLHNVLVKVECSDPDLYSIKTERH PALPPHGSGSCYTVL RS              ++  VG G VGG  GG    PSVLFMCELRFTS R    G    G+ E+  D+G  F+EEY+LEDLE+S  DLGE
Sbjct: 1003 KVMALLPPSVPVSKLVPFLSSAVRHAEARRRSNQVTHQLCRADYVNVKFELIQLQGQVSRVPELSLASFPQLGTLLRTCPPVELTDPTADYGVGCIKHVFESFIVLQFDVTNRLRDQRLHNVLVKVECSDPDLYSIKTERHFPALPPHGSGSCYTVLARSP-------------SAGGVGRGSVGGIGGG----PSVLFMCELRFTSARIGSGGAQGIGMAESAYDKGGGFMEEYLLEDLELSPADLGE 1234
[Close]
BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A835YS55_9STRA (CNH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS55_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.150e-39
Identity = 105/266 (39.47%), Postives = 136/266 (51.13%), Query Frame = 1 
Query:    1 LEVMSLLPPDLPVKTLAPFLSSAVRHAEARRRSNQVMHQLCRADYVNVKFELIQLQGQVSRVPELSLA-SFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKD-----------------------QRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFTSVRASLSGGLGETGIDQGFLEEYVLEDLEMSATDL 726
            L+ +  LP D+P+  L+ F   AVRH E+R R  QV+H LCRAD+VNVK+ELIQLQ   SRVPEL+L+ SF  LG + R+    +L DP+A+ GV C +H   + VVLQFDVS+  +                         RL  V V  E SDPD+ ++  ER LPALPP G+GSCY VL R              +A+  VGA V                 CELR+  V        GE      + EE  LED+E++  DL
Sbjct:  944 LKALDALPGDVPLARLSGFFGPAVRHHESRLRQAQVVHSLCRADFVNVKYELIQLQSSASRVPELALSLSFAHLGRVRRSSAATELADPAAECGVLCTRHAVGAHVVLQFDVSSRSRAARRAGGGAAVAPAGSAGVAAGAVHRLARVTVHCESSDPDVVAVAAERSLPALPPGGTGSCYVVLAR-----------GPAAAAAGVGASV----------------SCELRYAVVPLEGGXXXGE------YEEECPLEDVEITPEDL 1176
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BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A7S3JUX9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUX9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.620e-23
Identity = 86/256 (33.59%), Postives = 128/256 (50.00%), Query Frame = 1 
Query:    7 VMSLLPPDLPVKTLAPFLSSAVRHAEARRRSNQVMHQLCRADYVNVKFELIQLQ----GQVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFES-FVVLQFDVSNSL-KDQRLHNVLVKVEC-SDPDLYSIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFT--------SVRASLSGGLGET-GIDQGFLEEYVLEDLEMSATDL 726
            +  +LP ++    +  FL+    ++E    S  +  QL R  +VN+K+EL QLQ     +++ VPEL+     RLG + R+ PP+DL     +Y V+C +HVFES ++VLQF V+NS  +  +LHNV VKVE   D DLY+ + E  L  LP + +GSCY V           +T+ + + S                      F  ELRF         S R   +GG G T G+   +LEE  L++ E+S  D+
Sbjct: 1149 IEDILPENVLTARIGTFLNHLYNYSEYEMHSAAIEKQLLRVQFVNLKYELTQLQLRQQSKIATVPELA-----RLGRVKRSLPPIDLGAEDPNYHVACTRHVFESGYLVLQFHVTNSAPQGTKLHNVRVKVESLGDADLYAHEAEIPLKVLPNNTTGSCYVVF-------RTFSTVGTVTTS----------------------FAAELRFAVTQEQYGDSHREVTTGGPGSTPGLGPTYLEEIPLQNFELSTADI 1370
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BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A7S2UYE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYE1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.660e-19
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:  271 DYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGSCYTVLVR 480
            ++ V+C++H++ + VVLQF V+N +K  RL NV V VECSDPDLY++K+ER LPAL    +GSCYTVL R
Sbjct:    8 EFSVTCVRHLYTAHVVLQFSVTNHVKTHRLQNVRVMVECSDPDLYTVKSERALPALAHQATGSCYTVLQR 77
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BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A7S2S5Q9_9STRA (Coatomer subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5Q9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.100e-18
Identity = 64/187 (34.22%), Postives = 93/187 (49.73%), Query Frame = 1 
Query:  175 VSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPA--LPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSV--LFMCELRFTSVRASLSGGLGETGIDQGFLEEYVLEDLEMSATD 723
            V  VPEL+     +LG + R+  PV+LT+   +Y V C+KH+ + +VVLQFDV+N++ +QRL  V V +E ++P+LY  +    +P   L     GSC+  L R+                                +VP V  +F CEL+F  V    S G  E G ++GF E Y LEDLE+   D
Sbjct:  674 VYAVPELA-----QLGRVFRSSAPVELTESETEYVVRCVKHIMDDYVVLQFDVTNTIAEQRLEEVTVGLEGNEPELYGDEEALSVPCATLVYSTPGSCFVALARNT-------------------------------EVPVVPAIFSCELKFRVVEVDPSTGEVE-GDEEGFAENYPLEDLEILPAD 823
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BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A448Z3S0_9STRA (Coatomer subunit gamma n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3S0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.020e-17
Identity = 65/193 (33.68%), Postives = 92/193 (47.67%), Query Frame = 1 
Query:  145 KFELIQLQGQVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFTSVRASLSGGLGETGIDQGFLEEYVLEDLEMSATD 723
            K E +     +  +PEL+      LG   R+  PV LT+   +Y V C KH+F+S VVLQF V N++++QRL NV V ++ S+ ++++   E     +    + +C+TVL R+   S    T N                           F CELRFT V    S G  E G    F EEY LEDLE+S +D
Sbjct:  672 KKESVDPAAVIYAIPELA-----SLGRAFRSAAPVMLTESETEYVVQCTKHIFQSHVVLQFSVQNTIEEQRLDNVTVLIDDSESEVFTASGEIATDGVSYGETKNCFTVLERNTDESLPLTTSN---------------------------FTCELRFTVVEVDPSTGEEEGGT---FEEEYPLEDLEISTSD 829
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BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A7S2G1B7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G1B7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.450e-17
Identity = 62/195 (31.79%), Postives = 95/195 (48.72%), Query Frame = 1 
Query:  151 ELIQLQGQVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLY----SIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFTSVRASLSGGLGETGIDQGFLEEYVLEDLEMSATD 723
            E++     V  +PEL       LG + R+C PV+LT+   +Y V C+KH+ +  VVLQFDV+N++ +Q+L +V +KVE S+P+LY    SIK ++ +  +     GSC+ VL R+ P +                             +    F CEL F  V      G  E G + GF E Y +E L+++  D
Sbjct:  106 EVVDAAAAVYAIPELG-----ELGRVFRSCAPVELTESETEYVVKCVKHILDGHVVLQFDVTNTIAEQQLVDVSMKVENSEPELYDEILSIKCDKLVYGV----QGSCFVVLARN-PEA----------------------------PISHASFNCELEFRVVEVDPDTGDIE-GDEDGFEENYPVETLDLNTAD 261
[Close]
BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: F0WG92_9STRA (Coatomer subunit gamma n=5 Tax=Albugo TaxID=65356 RepID=F0WG92_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.400e-15
Identity = 64/229 (27.95%), Postives = 100/229 (43.67%), Query Frame = 1 
Query:   43 TLAPFLSSAVRHAEARR--RSNQVMHQLCRADYVNVKFELIQLQGQVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFTSVRASLSGGLGETGIDQGFLEEYVLEDLEMSATD 723
            T  P    ++ H EA    RS     ++     + +   L Q Q + +      +  F  LG L R+  P++LT+   +Y VSC+KHVF  ++VLQ+ V+N++ DQ L NV + +     D++ + +   +  L    S SCY  L                                G G  P+V    EL+F     + + G  E   D GF EEY LED+E++A+D
Sbjct:  606 TSGPLTFDSLPHVEAPEVARSTNADEEVTEESDIGM---LNQQQPEDAASDLYKIPQFADLGALFRSSKPIELTEAETEYVVSCVKHVFPGYIVLQYKVTNTVDDQLLSNVHINLSLDSDDVWQVHSVIPVKELRYGNSASCYVCLEYI-----------------------------GDGSYPAVQLANELKFKVHEVNTTSGEAE---DDGFDEEYPLEDVEVAASD 799
[Close]
BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Match: A0A267FPE6_9PLAT (Coatomer subunit gamma n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FPE6_9PLAT)

HSP 1 Score: 84.0 bits (206), Expect = 7.990e-15
Identity = 57/184 (30.98%), Postives = 90/184 (48.91%), Query Frame = 1 
Query:  172 QVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFESFVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGSCYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCELRFTSVRASLSGGLGETGIDQGFLEEYVLEDLEMSATD 723
            Q++ VPELS      LG+L ++  PV LT+   +Y V+C+KH F  +++LQFD+ N+L DQRL +V   V+C   + + +      PALP +   +CY+V    RP   +A +++                             C LRF  V        G+   D+G+ +EYVLE+L++   D
Sbjct:  617 QLASVPELSA-----LGSLFKSSEPVRLTEEETEYSVTCVKHAFSDYLLLQFDLLNTLPDQRLEDV--HVDCVPSEDWELVKVIPAPALPYNTPATCYSVF---RPTEPSACSLS-----------------------------CTLRF--VVKDCDPATGQPDSDEGYADEYVLEELDIGVCD 759
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3472.9258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3Y1_9PHAE7.250e-11174.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8R8_ECTSI3.130e-10773.49CNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YS55_9STRA1.150e-3939.47CNH domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3JUX9_9STRA1.620e-2333.59Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2UYE1_9STRA3.660e-1957.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2S5Q9_9STRA4.100e-1834.22Coatomer subunit gamma n=1 Tax=Rhizochromulina mar... [more]
A0A448Z3S0_9STRA1.020e-1733.68Coatomer subunit gamma n=1 Tax=Pseudo-nitzschia mu... [more]
A0A7S2G1B7_9STRA3.450e-1731.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0WG92_9STRA2.400e-1527.95Coatomer subunit gamma n=5 Tax=Albugo TaxID=65356 ... [more]
A0A267FPE6_9PLAT7.990e-1530.98Coatomer subunit gamma n=4 Tax=Macrostomum lignano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3472contigH-paniculata_contig3472:658..5504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.5
Seed ortholog evalue2e-92
Seed eggNOG ortholog2880.D7G8R8
Preferred nameVPS39
KEGG koko:K17267,ko:K20183
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005911,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008593,GO:0009056,GO:0009267,GO:0009506,GO:0009605,GO:0009705,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023056,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032006,GO:0032008,GO:0032879,GO:0032889,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042594,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044087,GO:0044088,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048475,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055044,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0099022,GO:0099023,GO:0140056,GO:1902500,GO:1902531,GO:1902533,GO:1902774,GO:1903432,GO:1904263,GO:1990126,GO:1990816
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759,KOG2063@1,KOG2063@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons5
Model size735
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3472.9258.1prot_H-paniculata_contig3472.9258.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3472 667..5504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.2571495-UTR-H-paniculata_contig3472:657..6661622930071.2571495-UTR-H-paniculata_contig3472:657..666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3472 658..666 +
1691481135.2969186-UTR-H-paniculata_contig3472:657..6661691481135.2969186-UTR-H-paniculata_contig3472:657..666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3472 658..666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.3050961-CDS-H-paniculata_contig3472:666..7621622930071.3050961-CDS-H-paniculata_contig3472:666..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 667..762 +
1691481135.3193507-CDS-H-paniculata_contig3472:666..7621691481135.3193507-CDS-H-paniculata_contig3472:666..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 667..762 +
1622930071.3368008-CDS-H-paniculata_contig3472:1481..16541622930071.3368008-CDS-H-paniculata_contig3472:1481..1654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 1482..1654 +
1691481135.3312707-CDS-H-paniculata_contig3472:1481..16541691481135.3312707-CDS-H-paniculata_contig3472:1481..1654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 1482..1654 +
1622930071.3539238-CDS-H-paniculata_contig3472:2218..23291622930071.3539238-CDS-H-paniculata_contig3472:2218..2329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 2219..2329 +
1691481135.3447332-CDS-H-paniculata_contig3472:2218..23291691481135.3447332-CDS-H-paniculata_contig3472:2218..2329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 2219..2329 +
1622930071.3760376-CDS-H-paniculata_contig3472:3765..39901622930071.3760376-CDS-H-paniculata_contig3472:3765..3990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 3766..3990 +
1691481135.3546834-CDS-H-paniculata_contig3472:3765..39901691481135.3546834-CDS-H-paniculata_contig3472:3765..3990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 3766..3990 +
1622930071.4058077-CDS-H-paniculata_contig3472:5383..55041622930071.4058077-CDS-H-paniculata_contig3472:5383..5504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 5384..5504 +
1691481135.3629339-CDS-H-paniculata_contig3472:5383..55041691481135.3629339-CDS-H-paniculata_contig3472:5383..5504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3472 5384..5504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3472.9258.1

>prot_H-paniculata_contig3472.9258.1 ID=prot_H-paniculata_contig3472.9258.1|Name=mRNA_H-paniculata_contig3472.9258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=242bp
MSLLPPDLPVKTLAPFLSSAVRHAEARRRSNQVMHQLCRADYVNVKFELI
QLQGQVSRVPELSLASFPRLGTLLRTCPPVDLTDPSADYGVSCIKHVFES
FVVLQFDVSNSLKDQRLHNVLVKVECSDPDLYSIKTERHLPALPPHGSGS
CYTVLVRSRPHSSNAATMNSTSASLAVGAGVVGGTMGGGGDVPSVLFMCE
LRFTSVRASLSGGLGETGIDQGFLEEYVLEDLEMSATDLGE*
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mRNA from alignment at H-paniculata_contig3472:658..5504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3472.9258.1 ID=mRNA_H-paniculata_contig3472.9258.1|Name=mRNA_H-paniculata_contig3472.9258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4847bp|location=Sequence derived from alignment at H-paniculata_contig3472:658..5504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGGTTATGTCTCTGCTACCCCCAGACCTTCCGGTGAAAACGCTCGC
GCCATTCTTGAGCTCGGCGGTGCGGCATGCCGAAGCAAGAAGACGCAGCA
ATCAGGTATGCATGTGCATGTATTATTGTTCTTGCACGCTCTTGGCGCGT
AGTCGTTTGCTATTCTCTTTTGCGTTTACTTGGATTACCCGACTCCAATC
CTGTGGTTACTTTCGTTTCGTGATGCTTTTTGCAGTGAAACATTGGAAAA
TGGCCCGGTTATTCTCCACTACCGTGTGGAAGGAGATGATAATTAACTAA
CAGTAGGGTGACTACATCAATAAAGTATACTATCATGACAATGTGAACGA
GATGGCAAAAAACAAGGTACATCATGGTGTTAACAAGGTATGTCGTAAAA
CTCCGCCCCTGCCTCGGTTGGTTCTTTGAGTGACGACGAATTGTGAATTA
TTCAATCCCCGTTGCTTGTGCCCCTTCCTTCCAAAAGTACTCTCAACACG
ACTCGAAACTTTGGCGTCCGCAGCACTCTGTTTACCTGAAAAGACAGACA
TATTCGGTTATTGGCTCGTGTAGTACCGTGACTGACATCACACCCAGCCT
GGTATCGTCATATACCAAATTGGCAGCACAAAACACGCGAGTGATGGACA
GTTCGATAATGCATGAGCTTATTAAAAATAAAATGCAAGACAGTCAAACT
GAACAAATAGGACCCACCTATATTCCCTTTTTTTTTGGGGGGGGGGGAGG
GTTCCATTAATAACCTCGAACCTTCTTGTCATGATTGGCAGTTGATTTGA
CACATGACGACCAACGACGAACAGGTGATGCATCAGCTGTGTCGAGCAGA
CTACGTGAACGTCAAATTCGAGCTAATTCAGCTTCAGGGCCAAGTCAGCA
GGGTGCCAGAGCTCTCCCTGGCATCGTTCCCAAGACTGGGCACTCTGCTG
AGAACGTGCCCCCCCGTTGACCTCACAGACCCCTCCGCAGACTACGGGTG
GGTGCTGGTCTTTTTATGCTGCCATTCTTTCGGCCGGTATAGATGCATGT
ACACCCGGTGGAGCCAATCCTACCTATTAGAGATCTTTTGTCTTGTTCGG
GTGACCACCTCCAAATGGCCGGTGAATTGTCTTTTGTCAGTTTGTCAGTT
TGTCAATTTGTCGCTCACCAAAGAAATTAGCTCTGCAAACGATCCATGGT
TGGTACGTACGTACGTCCGTCCACTTGGCTTGCAAAAAATTCGATTTGAT
TGATATGTTTTTTCGAAAATCTGTATCGTTGTTGCGTGGGCGTGTATTGT
GGGCTCGAAAGAAATGGATTGGTGTCGCTATGGTGTGATTTTGTCTTGCG
TGTGTAGGGATTAATGGCGTCATCCTGCTCATTCATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTGC
TTGTCTGTATGCTACGTACGTCTGATAACTTAAGTGTTATTCCCTTGTAT
ATTGCTTTTGTTGCTTCGTCCTTGCTTGTTCGGCGCGGTGTGCGTACGTC
ATTGCGTATAGGGTGAGCTGCATCAAGCATGTGTTCGAGTCCTTCGTGGT
GCTACAGTTCGACGTGTCCAACTCCCTTAAGGACCAGCGCTTGCATAATG
TTCTCGTTAAGGTCGAGTGCAGGTGAAGACAACCATTTTGAACGAAAAAA
AAAAGAAAAAGATTCCCTCTTGGAGGGTTTACATGCGTTGTAGGCGGTGC
TTACTCTACCCGAATGCGGATGCAAACGAACATCGAACGAGGTAATTAAA
GCGGCGCAAAAGCCAACAAGCAGCGATAGAGCACTCGGCATGCTTGTCGT
CAGTTCTACACTAGTGCCAAATAGAAAACACATGGTAGAGCTTCTACTAC
CGTAGTTCGTTCAGAAAGAAGGCGTTTCTGTGGTGTAAGCTTTCTCTACC
CCAGCCACGATATTATCGGCACAAGTACTTGAACTGTGATGTCATAATAC
ACGGTCGGAAAAGCTTGTCGATCAACAAATCAATCTCCTTAGCAAGATAT
GTCCCATGACACACTCAATTCTGTTCTCATGACTACGTCGGTGTCGAGAT
AATCGCTCTTTCGAGCAATAGTCATACTCCTGTGCGGGTATTCCCAGGTA
TTATTCCGGTAAATGCTTCGAGAGCATCGTTGAACATATATTTTCACGAA
AGGCACCTACAAGCGCAGAGAAATCGATGTTGATGATGACGTTTGGTGTT
AACATACGTCGTACGTTGCTGGGGTCCTACTCTATTTAGTACATGCCTAC
GCTTAGGTGCAAATACCCCCCTTCCTCCTTGGACGAATACGAATGAATAG
TTTAGACAATTTTTTTAAAGCTTTGGTTGGGTTTCAGCTATGTGCGGGAT
GGGTGACCGCAAGGGGCCCGCAGGATCTATATTGCTGAATCTCTCCCCCC
CCCCCTCCCCCCCTTAACCCACCGAACCCCATTTTTGATCAAGCAAACAA
ATTGAAATAAACATGCATTCGCTAATTTCGATGCAGATTCCGAATCTGGA
AGGATTTTTAAAAAACTCGAACTCTAGGTACGTCGAGTTTTCAAATATAT
ATATATTTTATGTATATGTATATGTATATGTATATGTATATGTATATATA
TATATATTATGATCCCTTTCACCCCCTGTTCAGTCGTGTTAGTTACCTGT
ATTCTCTGCAGTCGTAGATGGTATAGGATGCATGGGATAAACGTGCTCAC
ACTGAACCTTGTGGCGAGCACTGTTGAGTTTTCGTCTTGAAACATTGGAT
TATGACTATTTGTATACGTACTACTATCATTTTACCTCAGCAGGACTTGT
TGTTATACGTACAGAAAATCTTGTAGAATAATAAAAGTGCCAGATTGACT
TCCTTTTTTTTATTTTTTTGCACGCGTGTGTTCGTCCGCTTTGTCGTTTT
CCACGATACCTTGTAATTGATATTGGCTTGATACTGTCGAAGACGCGTAG
TCAATAAGGGCTAACAACTACAACATGCAAAAACATGAGCACTCCACCCC
CCTTAATTCCCCACCTGTACCCCTCTCCTCTTGACACACGCCACGTCGTC
GTCTCCAGTGATCCAGATCTCTACTCAATCAAAACAGAGAGACATCTCCC
CGCTCTGCCCCCGCATGGGTCAGGGTCTTGCTATACTGTCCTGGTCAGGT
CTCGACCTCACAGCTCTAATGCTGCGACGATGAACAGCACGAGTGCCAGC
CTTGCGGTCGGCGCAGGGGTTGTCGGTGGGACGATGGGGGGTGGGGGAGA
TGTTCCCTCAGTGCTGTTCATGTGCGAGCTCAGGTGAGAGAGTAGGAAAG
ACGATTAAGGAGGGGGTTATTGTGTACAGCATTGGCGTCATTTTTTGCCT
CTCGTTTTTATCGGTAATGTCGAAGACGGGTCGATGTATAACATGGTCGA
TATCATGCCTTAGGCCAGGGCACGGGGACGTCCAATGGCGTACGTCATTT
ATTGCAAACTCTCTTGTGATCATTATATCATATCATCATCACGACATTGG
CGCAAGGTGTTGTAGTAATATTGATATTGGTAGAACCCTAGAAGGTATTG
TAGGTGTATATGTTACTTACCCACTTGAGAATTTAGTCGCAACCCCAAGT
CGGCATTTTGTTGTGAGATTCATTCGTTTGTTTGTTTTTTATCGGAGTGT
TTTCGGGCTTAGGGTTGAATCGTGTGTGTGTGTGTACACTTGCCGAAAAC
GCGTCGTCGCAAACGGCGCAGAGGCCACGAACCCTATGCGGTTGGGAAAG
AAGGTTGGGGTTGGTTGGGAAGTAGTTCGGCGTTGATTCGACTCTCATAG
CGGGACCACTTGGCGTTTAACATCAACATGAGAACAACGGTTCGTGTGTC
GATATTGTTTTGTTCTTGTTCTTTCCGGAAGGGGAACGTTTTTAGGCACC
GTTCCTACATGCGCGTGTTTGCGTGCTAAAGGGTCAGTAAGCCAAACCCA
CTGTGGGGGACCTTTTCCCCTGTCTTACCCGTCTATCATGAAGGACGTCA
TTTGGGGTCAGTGCAAGCTGACTCGTGTGAGTATACTTTGATCATGCGTT
TGACTTTGCATTGTGAATTACGTCCGGTCGTTCGAAACTGTCACACATAT
GGCATTTTCATTTTAGGGTCAAGTAGGGCTATTCGGGCGGGCGAGGGGGG
GGGAGGGCGGGGGGGGCTACAGTTACGCTTGTCGTCCGCCGTTTTGTCAT
CGACTTGATCCAATCACAACGGCTTGCTGTACTCGCAAGTGAGCAGTGTC
TGTGAAGATCCGTTGTTTTGAAACTTTGCTTTGAGCACAGATTTAAATTT
TGTTCCGAGACTACGACCATCTTGTCGAAGCGTATTAATTAATAAGATGG
TATGAAACCTCTTTTCTTTTCCCCCTGTAGAGTATACTTTTTTTTTTCAA
CGTTAAGGGTAACTCGTTCTGCACTCAAGTGTTATATTCGTTTGGCTGGT
CAAATTTGACCGTCGTTAACAGGGATTAACGAACACCTTGTTTGTGATCT
GTAGCAGCATTTTATCTGTAGGGGTCACTAATCGACCAAAGTATTGCACT
AGATGGATACAGGTTTTAGAAGTTGTGTTGTGCCTCCGACATAACGCCTT
AAATGGGCGTACACTCTGTACGTACCATTGTATCTCACTGTTGCTGCATT
GCTTGCTTGACCCTCTTCTCGGGCAGATTCACCTCGGTGCGCGCGAGCCT
ATCTGGCGGTCTTGGCGAGACGGGGATAGACCAAGGCTTTTTGGAGGAAT
ACGTTTTGGAAGACTTGGAGATGTCAGCAACGGACCTGGGCGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3472:658..5504+

>mRNA_H-paniculata_contig3472.9258.1 ID=mRNA_H-paniculata_contig3472.9258.1|Name=mRNA_H-paniculata_contig3472.9258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at H-paniculata_contig3472:658..5504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCTGCTACCCCCAGACCTTCCGGTGAAAACGCTCGCGCCATTCTT
GAGCTCGGCGGTGCGGCATGCCGAAGCAAGAAGACGCAGCAATCAGATGT
CTCTGCTACCCCCAGACCTTCCGGTGAAAACGCTCGCGCCATTCTTGAGC
TCGGCGGTGCGGCATGCCGAAGCAAGAAGACGCAGCAATCAGGTGATGCA
TCAGCTGTGTCGAGCAGACTACGTGAACGTCAAATTCGAGCTAATTCAGC
TTCAGGGCCAAGTCAGCAGGGTGCCAGAGCTCTCCCTGGCATCGTTCCCA
AGACTGGGCACTCTGCTGAGAACGTGCCCCCCCGTTGACCTCACAGACCC
CTCCGCAGACTACGGGTGATGCATCAGCTGTGTCGAGCAGACTACGTGAA
CGTCAAATTCGAGCTAATTCAGCTTCAGGGCCAAGTCAGCAGGGTGCCAG
AGCTCTCCCTGGCATCGTTCCCAAGACTGGGCACTCTGCTGAGAACGTGC
CCCCCCGTTGACCTCACAGACCCCTCCGCAGACTACGGGGTGAGCTGCAT
CAAGCATGTGTTCGAGTCCTTCGTGGTGCTACAGTTCGACGTGTCCAACT
CCCTTAAGGACCAGCGCTTGCATAATGTTCTCGTTAAGGTCGAGTGCAGG
GTGAGCTGCATCAAGCATGTGTTCGAGTCCTTCGTGGTGCTACAGTTCGA
CGTGTCCAACTCCCTTAAGGACCAGCGCTTGCATAATGTTCTCGTTAAGG
TCGAGTGCAGTGATCCAGATCTCTACTCAATCAAAACAGAGAGACATCTC
CCCGCTCTGCCCCCGCATGGGTCAGGGTCTTGCTATACTGTCCTGGTCAG
GTCTCGACCTCACAGCTCTAATGCTGCGACGATGAACAGCACGAGTGCCA
GCCTTGCGGTCGGCGCAGGGGTTGTCGGTGGGACGATGGGGGGTGGGGGA
GATGTTCCCTCAGTGCTGTTCATGTGCGAGCTCAGTGATCCAGATCTCTA
CTCAATCAAAACAGAGAGACATCTCCCCGCTCTGCCCCCGCATGGGTCAG
GGTCTTGCTATACTGTCCTGGTCAGGTCTCGACCTCACAGCTCTAATGCT
GCGACGATGAACAGCACGAGTGCCAGCCTTGCGGTCGGCGCAGGGGTTGT
CGGTGGGACGATGGGGGGTGGGGGAGATGTTCCCTCAGTGCTGTTCATGT
GCGAGCTCAGATTCACCTCGGTGCGCGCGAGCCTATCTGGCGGTCTTGGC
GAGACGGGGATAGACCAAGGCTTTTTGGAGGAATACGTTTTGGAAGACTT
GGAGATGTCAGCAACGGACCTGGGCGAATAAATTCACCTCGGTGCGCGCG
AGCCTATCTGGCGGTCTTGGCGAGACGGGGATAGACCAAGGCTTTTTGGA
GGAATACGTTTTGGAAGACTTGGAGATGTCAGCAACGGACCTGGGCGAAT
AA
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