mRNA_H-paniculata_contig3470.9256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3470.9256.1
Unique NamemRNA_H-paniculata_contig3470.9256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3470.9256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3470contigH-paniculata_contig3470:15966..17060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.0131638-CDS-H-paniculata_contig3470:15967..161401622930071.0131638-CDS-H-paniculata_contig3470:15967..16140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 15968..16140 -
1691481135.198459-CDS-H-paniculata_contig3470:15967..161401691481135.198459-CDS-H-paniculata_contig3470:15967..16140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 15968..16140 -
1622930071.0306685-CDS-H-paniculata_contig3470:16909..170601622930071.0306685-CDS-H-paniculata_contig3470:16909..17060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 16910..17060 -
1691481135.208081-CDS-H-paniculata_contig3470:16909..170601691481135.208081-CDS-H-paniculata_contig3470:16909..17060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 16910..17060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3470.9256.1prot_H-paniculata_contig3470.9256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3470 15968..17060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3470.9256.1

>prot_H-paniculata_contig3470.9256.1 ID=prot_H-paniculata_contig3470.9256.1|Name=mRNA_H-paniculata_contig3470.9256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
ALEAGAAQARKLEPKSGDGMTTASTTTKNKGDNSYNNTAPEEAGEGSNIH
GNVDERSTGFSAQVGVADEVLQPFWATPKGENWRVGFSPLGNGSTITATQ
GVRVRLGF
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mRNA from alignment at H-paniculata_contig3470:15966..17060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3470.9256.1 ID=mRNA_H-paniculata_contig3470.9256.1|Name=mRNA_H-paniculata_contig3470.9256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-paniculata_contig3470:15966..17060- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTTGAGGCAGGTGCAGCACAAGCCCGCAAGCTTGAACCAAAGAGTGG
AGATGGCATGACCACCGCCAGCACGACCACCAAGAACAAGGGCGACAACA
GTTATAACAACACCGCTCCCGAAGAGGCCGGCGAGGGCAGTAACATCCAT
GGTGAGGGGCAGGGGAGCAAGATACGCAAGGGCGTGGGGATTGTGCCGTA
GTTCACGGGGTTTACTTATCACCCTCGCCAAGGCGAGCGGATCACTTGCG
GATCTTTTAAATAGCGTGTCTCTATGTTATGTGTGCCTACTAGTGGTAAC
TTTAGTTCGATTTCCTTTTTCTCTTTCGAGGCGCGGGTTGTGCTGCAGGG
TTAGGGTTACCTCAGTTCAACTTGATACTCATTCGTAGAATTTTCGCCTT
TTCGTTTTTTGTTTCGATTTGTTTTGTTTTCCCATCGTTTTCGAAAAACT
AACATCGAACACCTTGTTTATTTGAATATAGGATTCTTTTTTACGTTTTT
TTTTTTTTTTACTCCATTGGTTGATCTTCAGTCATAGTTTTTCCGGAAAA
AAAAAGAAGAAAAAAAAAGGTATGGACAACGAAGGAGAGAAGTCCACATT
TTTATGAAGTTATCAGTTTTTCTTTTTTCCCCAAAATTTTGGTGATATCG
TATTTTCCAGGTGCTGATACTCGTTTTTTTGCCCGAAGGAGGGGACATTA
AATGTCGCCTATACTTGGCATCGTTTGATTTTAGCCACAGACTTAACACG
TATTGATAGACTCGTATCAACTATTTTTCAACACTTGATCATTTCTGCAG
TAGGAAGCGTCGTACTGGCATGACATAACGTCATCCCCCTCTACCGATGC
GGGTTAGGATTATCCGGAATATTTATTTCGTCCCAATTTTGTGTCATACT
CTTTATTGACACTCTCTTAGGGAATGTTGATGAGAGGTCCACTGGCTTTT
CAGCGCAAGTGGGGGTTGCTGATGAAGTCTTGCAGCCTTTCTGGGCTACC
CCGAAGGGGGAAAACTGGAGGGTGGGATTCTCTCCATTGGGTAATGGGTC
GACGATCACGGCTACTCAGGGGGTGAGAGTGCGTTTGGGTTTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3470:15966..17060-

>mRNA_H-paniculata_contig3470.9256.1 ID=mRNA_H-paniculata_contig3470.9256.1|Name=mRNA_H-paniculata_contig3470.9256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig3470:15966..17060- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTTGAGGCAGGTGCAGCACAAGCCCGCAAGCTTGAACCAAAGAGTGG
AGATGGCATGACCACCGCCAGCACGACCACCAAGAACAAGGGCGACAACA
GTTATAACAACACCGCTCCCGAAGAGGCCGGCGAGGGCAGTAACATCCAT
GGCGCTTGAGGCAGGTGCAGCACAAGCCCGCAAGCTTGAACCAAAGAGTG
GAGATGGCATGACCACCGCCAGCACGACCACCAAGAACAAGGGCGACAAC
AGTTATAACAACACCGCTCCCGAAGAGGCCGGCGAGGGCAGTAACATCCA
TGGGAATGTTGATGAGAGGTCCACTGGCTTTTCAGCGCAAGTGGGGGTTG
CTGATGAAGTCTTGCAGCCTTTCTGGGCTACCCCGAAGGGGGAAAACTGG
AGGGTGGGATTCTCTCCATTGGGTAATGGGTCGACGATCACGGCTACTCA
GGGGGTGAGAGTGCGTTTGGGTTTCGGAATGTTGATGAGAGGTCCACTGG
CTTTTCAGCGCAAGTGGGGGTTGCTGATGAAGTCTTGCAGCCTTTCTGGG
CTACCCCGAAGGGGGAAAACTGGAGGGTGGGATTCTCTCCATTGGGTAAT
GGGTCGACGATCACGGCTACTCAGGGGGTGAGAGTGCGTTTGGGTTTC
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