mRNA_H-paniculata_contig3470.9255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3470.9255.1
Unique NamemRNA_H-paniculata_contig3470.9255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3470.9255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3470contigH-paniculata_contig3470:10557..11777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.9175584-CDS-H-paniculata_contig3470:10558..107781622930070.9175584-CDS-H-paniculata_contig3470:10558..10778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 10559..10778 -
1691481135.180435-CDS-H-paniculata_contig3470:10558..107781691481135.180435-CDS-H-paniculata_contig3470:10558..10778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 10559..10778 -
1622930070.9374125-CDS-H-paniculata_contig3470:11655..117771622930070.9374125-CDS-H-paniculata_contig3470:11655..11777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 11656..11777 -
1691481135.189547-CDS-H-paniculata_contig3470:11655..117771691481135.189547-CDS-H-paniculata_contig3470:11655..11777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 11656..11777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3470.9255.1prot_H-paniculata_contig3470.9255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3470 10559..11777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3470.9255.1

>prot_H-paniculata_contig3470.9255.1 ID=prot_H-paniculata_contig3470.9255.1|Name=mRNA_H-paniculata_contig3470.9255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
DDIFFRAYGHDLPESENKWNTLAHRAPAAPLLHLAMEYSSGAVSTWLLLE
VCGDIENGGKSVAWCRRVILEDDQTKGGTVKGITHDEAEEQTVGKDRSET
LDAEVHESRRQRRW
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mRNA from alignment at H-paniculata_contig3470:10557..11777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3470.9255.1 ID=mRNA_H-paniculata_contig3470.9255.1|Name=mRNA_H-paniculata_contig3470.9255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1221bp|location=Sequence derived from alignment at H-paniculata_contig3470:10557..11777- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACATCTTCTTCCGAGCCTATGGCCACGATCTTCCCGAGAGTGAAAA
CAAGTGGAACACCTTGGCTCATAGGGCCCCCGCCGCTCCTCTGTTGCACC
TCGCCATGGAATATTCCTCGGGGTGAGTGTGTATCGTTACCCCGGCGTCA
TTTTTTCCTACCTGTTTTAGTTCGTTCGTTCATTATATATATATATATAT
ACGCGATTTAAAATTTAAAAAAAGAAGAATTCGTTTCATTTATAGTGATA
TATAAAGCGGTGGTAGTACATAAATAGCCAAATATGTTATCCTCCATTTT
TTGGCTGTTATTATCAAGTCTGTACACCGATACAAGCGCAAGGTGATGCA
GGTCAGTCACGATGGCACTATGCGGTTGTGATTTGTGGTGACTTGACCTA
CCTTTGTACAACACAATTTATTGAGACGTTCGTTGTAGACTTCAGGTGTG
TAAAATCGTGGAAGAAACGCAAAGCAGCAGGTGAACAATAATGGTTGTTT
CAATATATTGTCATTTTACGCTTTCCTTGGACCCTCTTCGAAAACAAAGG
AAGAAGATCGATGTCCGTCCATTTTTGTTGGGTGCTGCTGCTGTTTTTGC
TATGCACCACGTTCTTGGCGGCTACTTGCCATAACGATTTTTCAGCCCTC
TAGACCTCACGATGCTTTTGTATAGAATATTTTTATTGCAGAAAATATTT
TTGAAAATCGTTTACGTTGTTGTATCGAAAAATTTACTCGCCTGGTGATA
ATTTTGGACACGAATTAATCATGGCCCTCCTCCTTAGTGAGAGTGCATTA
TGTTGAGCGTGTGCAGTTTCCGAACATAGTTCACGGTCAGCGATAGCTGT
TCGATCTAGTATCAGATTGCCCCGGTCACATGATGTAGACGGTTGGCACA
CATTTGTGTGCTCTAGCTTTGTTTCGTGGAACTACGCCACTCTACTCCAG
TACCGTAACCCGCCCGCCCATCCTCTGTTGCATTCTTTCTTTTTCTCAGA
GCTGTCTCTACATGGCTTCTGCTGGAGGTCTGCGGGGATATCGAAAATGG
TGGGAAGAGTGTAGCGTGGTGTCGTCGCGTTATCCTGGAAGATGACCAAA
CTAAGGGGGGCACGGTAAAGGGTATAACGCATGATGAAGCTGAAGAACAA
ACAGTCGGGAAGGATCGAAGTGAGACGCTTGACGCCGAGGTGCACGAAAG
TCGACGGCAACGACGGTGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig3470:10557..11777-

>mRNA_H-paniculata_contig3470.9255.1 ID=mRNA_H-paniculata_contig3470.9255.1|Name=mRNA_H-paniculata_contig3470.9255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig3470:10557..11777- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGACATCTTCTTCCGAGCCTATGGCCACGATCTTCCCGAGAGTGAAAA
CAAGTGGAACACCTTGGCTCATAGGGCCCCCGCCGCTCCTCTGTTGCACC
TCGCCATGGAATATTCCTCGGGGACGACATCTTCTTCCGAGCCTATGGCC
ACGATCTTCCCGAGAGTGAAAACAAGTGGAACACCTTGGCTCATAGGGCC
CCCGCCGCTCCTCTGTTGCACCTCGCCATGGAATATTCCTCGGGAGCTGT
CTCTACATGGCTTCTGCTGGAGGTCTGCGGGGATATCGAAAATGGTGGGA
AGAGTGTAGCGTGGTGTCGTCGCGTTATCCTGGAAGATGACCAAACTAAG
GGGGGCACGGTAAAGGGTATAACGCATGATGAAGCTGAAGAACAAACAGT
CGGGAAGGATCGAAGTGAGACGCTTGACGCCGAGGTGCACGAAAGTCGAC
GGCAACGACGGTGGAGCTGTCTCTACATGGCTTCTGCTGGAGGTCTGCGG
GGATATCGAAAATGGTGGGAAGAGTGTAGCGTGGTGTCGTCGCGTTATCC
TGGAAGATGACCAAACTAAGGGGGGCACGGTAAAGGGTATAACGCATGAT
GAAGCTGAAGAACAAACAGTCGGGAAGGATCGAAGTGAGACGCTTGACGC
CGAGGTGCACGAAAGTCGACGGCAACGACGGTGG
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