mRNA_H-paniculata_contig3470.9253.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3470.9253.1
Unique NamemRNA_H-paniculata_contig3470.9253.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3470.9253.1 vs. uniprot
Match: A0A6H5JD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD01_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.710e-26
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = 3 
Query:    3 LYFGMEKFLPYFDFVGDFQHIQEHSEALLRRAGIWEDFGASGWGPDGKDMFFQRTTVQGHATGSSHS 203
            L+FG++KFLPYFDFVGDF+H+QEHSE  L+RAG+W++FGASGWG  G+  FFQR+TV+GHATGS  S
Sbjct:  945 LFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWKEFGASGWGRWGQAAFFQRSTVRGHATGSHDS 1011
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BLAST of mRNA_H-paniculata_contig3470.9253.1 vs. uniprot
Match: D8LIV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.380e-19
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 3 
Query:    3 LYFGMEKFLPYFDFVGDFQHIQEHSEALLRRAGIWEDFGASGWGPDGKDMFFQ 161
            L+FG++KFLPYFDFVGDF+H+QEHSE  L+RAG+WE FGASGWG  G+  FFQ
Sbjct:  868 LFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEKFGASGWGRWGQAAFFQ 920
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BLAST of mRNA_H-paniculata_contig3470.9253.1 vs. uniprot
Match: A0A835YWJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.480e-7
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:   15 MEKFLPYFDFVGDFQHIQEHSEALLRRAGIWEDFGASGWGPD 140
            M+KFLPY +F+ ++  +Q H   +L + G+WE +GASGWG D
Sbjct:  768 MDKFLPYMNFIAEYTQVQHHVREMLEKVGMWEQYGASGWGRD 809
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BLAST of mRNA_H-paniculata_contig3470.9253.1 vs. uniprot
Match: A0A7S2WKE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKE2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.770e-6
Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 3 
Query:   15 MEKFLPYFDFVGDFQHIQEHSEALLRRAGIWEDFGASGWGP-DGKDMFFQRTTV 173
            +E+    + F G+F+ + EH  A L +AG+W++FG SGWGP +   MF + +  
Sbjct:   95 IEELFHLYSFFGNFERLPEHGRAFLTQAGLWKEFGESGWGPGENVSMFHENSAA 148
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BLAST of mRNA_H-paniculata_contig3470.9253.1 vs. uniprot
Match: A0A7S2WJM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJM7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.090e-5
Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 3 
Query:   15 MEKFLPYFDFVGDFQHIQEHSEALLRRAGIWEDFGASGWGP-DGKDMFFQRTTV 173
            +E+    + F G+F+ + EH  A L +AG+W++FG SGWGP +   MF + +  
Sbjct:  259 IEELFHLYSFFGNFERLPEHGRAFLTQAGLWKEFGESGWGPGENVSMFHENSAA 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3470.9253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JD01_9PHAE7.710e-2670.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIV5_ECTSI2.380e-1971.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWJ0_9STRA1.480e-747.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WKE2_9STRA7.770e-637.04Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WJM7_9STRA2.090e-537.04Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3470contigH-paniculata_contig3470:2978..3929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.8592386-CDS-H-paniculata_contig3470:2977..30211622930070.8592386-CDS-H-paniculata_contig3470:2977..3021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 2978..3021 -
1691481135.1570363-CDS-H-paniculata_contig3470:2977..30211691481135.1570363-CDS-H-paniculata_contig3470:2977..3021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 2978..3021 -
1622930070.8776226-CDS-H-paniculata_contig3470:3766..39291622930070.8776226-CDS-H-paniculata_contig3470:3766..3929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 3767..3929 -
1691481135.169774-CDS-H-paniculata_contig3470:3766..39291691481135.169774-CDS-H-paniculata_contig3470:3766..3929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3470 3767..3929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3470.9253.1prot_H-paniculata_contig3470.9253.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3470 2978..3929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3470.9253.1

>prot_H-paniculata_contig3470.9253.1 ID=prot_H-paniculata_contig3470.9253.1|Name=mRNA_H-paniculata_contig3470.9253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
SFISGWRSSCPILISWETSNTSKSTPKRCSGEQAYGKISAHQAGDPMART
CSSKGQQFKVTPPAVAIPR
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mRNA from alignment at H-paniculata_contig3470:2978..3929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3470.9253.1 ID=mRNA_H-paniculata_contig3470.9253.1|Name=mRNA_H-paniculata_contig3470.9253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=952bp|location=Sequence derived from alignment at H-paniculata_contig3470:2978..3929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTTATTTCGGGATGGAGAAGTTCTTGCCCTATTTTGATTTCGTGGGA
GACTTCCAACACATCCAAGAGCACTCCGAAGCGCTGCTCCGGCGAGCAGG
CATATGGGAAGATTTCGGCGCATCAGGCTGGGGACCCGATGGCAAGGACA
TGTTCTTCCAAAGGTTTGAGGGGATTCATGTACTTGGACTAACTATGGCA
GCGACTGAAGCAATTGAAGCGATTCATTCTTTTTTTGCCAAATCGACGAC
AAACGCTTGGTTTTAGGTTGGTTGGTTCCGCGATTGCACAAGTAGCCACA
TCTTAGAATGGTCGATCGACCAAAGATATTAACTCGGAAGTTACTTTGTA
ATCACAGTTTCTCTCAATAATTTTCAAGGTATACCCTCTTGAAAGTATAC
ATTTCTGAATTCGGTCACTGACGCCTGTGTGATCATCTACGGTCTGTCGT
TTCATGAAGTTGCAGACGGCAAGGCATCCACGTTTGTATTCATACTCACG
AGTTATTGTGATCGCCCCCACCTTTTTTTTTGGCTTTAGGTGGCGAACTG
ACCGAGACGCTCGTTATTTATGTTTCTATGGAAATGTGTTGTATTTTTTG
TTGGTGCAAATTGATGGCCTTTGGGCCTTGTGCTACGATTTGTAGTGTAT
CAATGCCTTGCAACACGTGACGATATGACGATAGTTTGGCCCGTATCAAT
GCCGGTCACACTGGGATGACCTCCATAGGTTCTAGTTAACGCATCTCAGG
GAAGTATTCAGGGAAAAAAGGGGAAGCCTCCACGGTAATAGTGGCATCTC
TTTCCCCCACTGGGCCCCGTCGACATCGTGTATACTGCGCATGATTATGG
TGTGACCCTTGGCTTCCCTGCCAATGCCGTGCTTTTCATTCCTTTGCTGT
GCGTGCAGGACAACAGTTCAAGGTCACGCCACCGGCAGTAGCCATTCCAA
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig3470:2978..3929-

>mRNA_H-paniculata_contig3470.9253.1 ID=mRNA_H-paniculata_contig3470.9253.1|Name=mRNA_H-paniculata_contig3470.9253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig3470:2978..3929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTTATTTCGGGATGGAGAAGTTCTTGCCCTATTTTGATTTCGTGGGA
GACTTCCAACACATCCAAGAGCACTCCGAAGCGCTGCTCCGGCGAGCAGG
CATATGGGAAGATTTCGGCGCATCAGGCTGGGGACCCGATGGCAAGGACA
TGTTCTTCCAAAGAGCTTTATTTCGGGATGGAGAAGTTCTTGCCCTATTT
TGATTTCGTGGGAGACTTCCAACACATCCAAGAGCACTCCGAAGCGCTGC
TCCGGCGAGCAGGCATATGGGAAGATTTCGGCGCATCAGGCTGGGGACCC
GATGGCAAGGACATGTTCTTCCAAAGGACAACAGTTCAAGGTCACGCCAC
CGGCAGTAGCCATTCCAAGAGACAACAGTTCAAGGTCACGCCACCGGCAG
TAGCCATTCCAAGA
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