mRNA_H-paniculata_contig3469.9249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3469.9249.1
Unique NamemRNA_H-paniculata_contig3469.9249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3469.9249.1 vs. uniprot
Match: D7FM05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM05_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 8.310e-37
Identity = 76/109 (69.72%), Postives = 90/109 (82.57%), Query Frame = 3 
Query:   54 MYGSTSSTTPATAQQSRRLLDDSLVVATETSGMADDVMGRLYGQRQALESSNMRVGEMREMTEEARVSLKEMERKAFMQKICLYSTIAVLAILILLVAYREITNDGKLF 380
            MYGST+ TTP++AQ SRRLLDDSL V  ETS MADDVM RL+GQR+ LES+  R+G+MR MT+EAR+ LKEME+KA  QKICLY TIA+L+ILI LV YRE+TN G LF
Sbjct:    1 MYGSTT-TTPSSAQ-SRRLLDDSLAVQNETSNMADDVMARLFGQRETLESAQQRLGDMRGMTDEARLHLKEMEQKALRQKICLYLTIALLSILICLVIYREVTNGGHLF 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3469.9249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM05_ECTSI8.310e-3769.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3469contigH-paniculata_contig3469:6299..10270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000410.1
Exons3
Model size745
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3469.9249.1prot_H-paniculata_contig3469.9249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3469 6352..9908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.142535-UTR-H-paniculata_contig3469:6298..63511622930070.142535-UTR-H-paniculata_contig3469:6298..6351Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3469 6299..6351 +
1691481134.7280297-UTR-H-paniculata_contig3469:6298..63511691481134.7280297-UTR-H-paniculata_contig3469:6298..6351Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3469 6299..6351 +
1622930070.1987903-UTR-H-paniculata_contig3469:9908..102701622930070.1987903-UTR-H-paniculata_contig3469:9908..10270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3469 9909..10270 +
1691481134.766198-UTR-H-paniculata_contig3469:9908..102701691481134.766198-UTR-H-paniculata_contig3469:9908..10270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3469 9909..10270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.1546702-CDS-H-paniculata_contig3469:6351..64261622930070.1546702-CDS-H-paniculata_contig3469:6351..6426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3469 6352..6426 +
1691481134.7378788-CDS-H-paniculata_contig3469:6351..64261691481134.7378788-CDS-H-paniculata_contig3469:6351..6426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3469 6352..6426 +
1622930070.1678045-CDS-H-paniculata_contig3469:8843..89301622930070.1678045-CDS-H-paniculata_contig3469:8843..8930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3469 8844..8930 +
1691481134.749351-CDS-H-paniculata_contig3469:8843..89301691481134.749351-CDS-H-paniculata_contig3469:8843..8930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3469 8844..8930 +
1622930070.1865003-CDS-H-paniculata_contig3469:9740..99081622930070.1865003-CDS-H-paniculata_contig3469:9740..9908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3469 9741..9908 +
1691481134.7580462-CDS-H-paniculata_contig3469:9740..99081691481134.7580462-CDS-H-paniculata_contig3469:9740..9908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3469 9741..9908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3469.9249.1

>prot_H-paniculata_contig3469.9249.1 ID=prot_H-paniculata_contig3469.9249.1|Name=mRNA_H-paniculata_contig3469.9249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MYGSTSSTTPATAQQSRRLLDDSLVVATETSGMADDVMGRLYGQRQALES
SNMRVGEMREMTEEARVSLKEMERKAFMQKICLYSTIAVLAILILLVAYR
EITNDGKLF*
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mRNA from alignment at H-paniculata_contig3469:6299..10270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3469.9249.1 ID=mRNA_H-paniculata_contig3469.9249.1|Name=mRNA_H-paniculata_contig3469.9249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3972bp|location=Sequence derived from alignment at H-paniculata_contig3469:6299..10270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTATGGCAGTAGAAGACGCCGCCGGCGACGCTTCGTAGGAGGATATAT
ATCATGTACGGTTCCACATCGTCAACCACACCTGCAACAGCGCAGCAAAG
CCGGAGACTACTAGATGACTCTCTCGTGGTGAGTCACTGCTCAAACTGCC
AATCGAACTAAATTGGGTTTGCAGTTGTATAATATCAAAACACATGTAAT
CAACAAGAAGCAACTACACACGCTCCAAACAGCATGAGTTTGCCAGCTGG
GTTGGCAGTCTCGCGAACGAAGTGTTCCCTGAGCTCTGGATAGGATTCCA
TGGTCGTTGGCCAGCTTCCGCGACCTCATGAAGTAGGTAATGCCCCAAGC
ACTTCTATAGAAAAATCTTACGTGCACCAAACATAGCTTGAGGCAATAAC
CGAGAAGACTGTGCTGTCAAGACGTCCGGCACTACTGATTGTATCGAAAA
AGTTTCGAGGCTGTCGAGCTTACATCGTTGCATACTGTGCTATCTTTTAT
TGGTGGATACAATCTATACCGCTATCACCTTTCACGGGATGAACTAGTCA
GTGTGTTTGTACACGGGCTTGAGGAGTTTCAGTTGGCAGGCGCCTGGTTT
CTCCGCACCTGGTGAAGGACGAAAGACAGAAAGAGATACACTCGTCCTCC
ACTCGGCTCAAAGAGGGTACAACGGCTGATGCTACTGTGAACCCCTGTCT
AATAAACACTTCAGGCTACCCGATGCCTACAACCGTTGTAGTGGTCCAAC
AAACGTTTGTTGATAAAAAAAGGCACATCAATAGCAAAGGGTAGTGTTTA
GTTCCCGCGTTTTGGTTCACAATCCCTCACCATCGTCCTACATTTTGTGA
ATAGCCATCCATGGGCCTCGGCCGTATTGAGGTCTTGTTTAGCGAGCATG
CCGAATAGACCCAAGTAGGGGTGACTAAGTTCATCTAACATGATAAAATA
ACCCAGAGGGCAGCACTATCCAGACAGTACAACATATTACCATTGATGTA
GGTTATGTTGCTGTACAGATTTCGTGTGAGGTGTGCTGAAAACAAATCAA
TATTTTCTCATGGGGATGTTTTGGTAGAATCCATTTTTCAAGTATCTTGT
CCTTGTGCTATTGCGAGTTTCAACACGCGTGACAAACCTGCTCTCTTTGC
ATACTCTTGTGAATGCGGGTGTGGTCCATAACACTGGTGTGGTGGCTACA
CGAAAATCAAGGCCCAAACCAAGTAGATTGATTTGATATGAGCGGTACAC
CCAGCGTTGTTGCGAAGGATGCTGGCACTGCGACATTTCGCCAACCCAGC
TCACGGCGGCCCCAGGACTGGAGTATGGCTACAGTTGTTCATGTCAGCGT
TCTGACGGATGCGCATATCTGAACACAGTTAGCGGTGCGCCTAGCCCCGA
TTGGCAGCCAAATTCTGGCGACAGCGACGACATGGATAAAGCGCCGGATA
TAGAAAATATATTTATCCCCTGATAGATTATTTGTATTCAGTGTCGGGTT
TCCTCGCACTTGTAAGCTGAACTACTCGATACAGGTTACGAGTTGGCTCG
TGAGACTCGACACACACTGGGGTATGTGCCTAATCTGGAGCTTGATCTTA
TGGGACATTTAATCCGCGTTATAAGAATTCCAAACGGCCCAATATATATA
ATATAATATATATATATATATGCTACTTTCTCTGTGAAGATGCTTCGTCG
TCATGACTTGATAAATTCATAAAATCATAAAATAAACCCACAGCTGTGGT
TTTCGCGCACACGACGCAAAAAACCGCATCTCAATCGACGACCTTGCTGT
GGAGTGTATTTATTGACAACATAGCCTATCAACACAAACTACTCGAATTT
AAAGTGGTCAATCAACACCAAAAACGCACCCAAAACTACTCGAATTTAGA
GTGCGGGAGAGGGCATCCTTTTCGAACGTAAATATCCTTCACACATCTGG
TCGTTAGGGGCATATTCCGCGTGGCATATTGCATTGGTTGTAGATCGTTG
TTGTAACCAGCATTCTTAGGGTCCCAAAGCACTCGAAACTTAGCTTTGCT
CGGCCTTTTTACCGTGTAGCTGTGAGCTGCACCAGTACATGATAAAAAGG
GACAACGTGGTTAACACAACAGCAGCAGCAGCAGCAGCGCTTCTTCGCGC
ATCCTACGCCAAACCACCCTTGAATATTACCAGGTGACGTTGGGTCTCTC
CATGGTTGTGTGTGTGTGTGTTTTTGGGGTGACGTCAACTATATTTTGTT
TCTTATTTGCCCCAAACCCTCTAAAAAGACGGCAAAAACACGTGGTCGAT
ACGAAATTTTAGGACATAATTACCGCCTTATTCAGGATAATTCAAGACTT
AGGCGCACCCCTGACAGTATAATCTACCCTGATATACCCGGGGTTTTTTT
GTACGAGGTAGTAAATAGTGTTCCCCCTACATTTCCATTGGTTTTCTCAC
GTTGCATTAATCCATTCTCAAGCTTATGGTGTTGAAGAAGTGTATTTTGG
CTCGCCTCTGAAAGCACCTATATAACACCCGTTTTTTCGTGACAGGTCGC
AACTGAGACTTCAGGCATGGCAGACGATGTAATGGGGCGATTATACGGGC
AAAGGCAGGCTTTAGAGTCTTCGAACATGCGGGTAAGTATAAGACCACGT
GGTCGGCCTGGTTGTTGTCATAGGGCTAGGACTGGGTCGTATCGTAGAAG
AATCCTAATAGTTAGCAACAGTTCACGAAAACGGGGAGACTACTGCTAGA
ATATTCGAATATTTGGCCAAGTATCAGCTGTTATATTTGCTTTACCGAAT
GTTTATAGGACAGACCATTAACGGTATGGCGTTTTTATTTCTGTTTTTTT
TCAAATGTAACAGCGACCACGTGCAGTGTCGGTGAGTGCACCGGGATCCC
AGTCCTCCAGGATTGTCCATTGGAACGAGCATTCGCGTGTCGTAGCCTCA
TTTGCGCTCTTGTGTGGTTCAGGACCTGTCTCGTCGAGATTAATCTATTA
GTAGTCAATTCTCGCGAACCTTCGATTCTGTTTTCAGGGTATATGATTGG
TCTCTAACCTGACACTTGAGAAGTTTTAGTTCCCCAACCAATCAGAGGCC
CTGGAAACAGAATTGAATCTCCGTGAGAACCGATAACTCGATCTCGAAAA
GACAGTGCATCTGCTATTGAATTTTAGCAGTGCAGCATTCACGTGGTTAA
GCGGCGATCTAGCAACAGCAACAACTTGCGCTTGGTCGATTTTGTTGCAA
AGCCAGGTTGGACAACTTGAAAGGATGACACACCAAGCACCAGAGATTGT
TTTAAGTTCCTCTCCGATTATGGAGGTCGATTTTGCGTTCGTTCCAACTG
GACACTGTACGTCCGATTTTTTTTCTTGTGCGGTTGCTCATGCTTTGTGC
TTCGCTCGTTTCCGTATTTATTGTTTACTCAACTCTTGCTAGGTAGGGGA
GATGCGAGAGATGACAGAAGAAGCTCGCGTTTCGTTAAAAGAGATGGAGC
GCAAGGCCTTCATGCAGAAGATTTGCCTCTACTCCACAATCGCGGTGCTG
GCGATACTCATCCTTTTGGTGGCCTACCGAGAAATCACGAACGATGGTAA
ACTGTTTTAGTCGCCAACGTGAGATGTGCGTGATGCTGTGCAGCTCTCAC
CAAAGCTGCCAATTGCAGGGAGAGCGAGAGGAAGGGAGAAGGGAGGATGT
TTGTGCCCCTCAACTACAGTATGTTTGAAATTGCAATCGCTCGCGCCCGG
TTAGGCCCTCGTAAACACCATGCTGCCGCGCGCCTACCGCTTTAGAATGC
ATCTCGACCGGTTGTCGTCGTTTACGGAAGTTATTCCGACTGCACCACGT
TGGGTTGGCGATGGCATGTTTCGTCGCGATTGCCTTCGTCCCTATTTGTC
CGTCCTTCCTATGTTTCCGTTGTTGTATGTTTCAATTCTTCGTTTTCTCT
GCGAGGGGTGTTAAGTATGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3469:6299..10270+

>mRNA_H-paniculata_contig3469.9249.1 ID=mRNA_H-paniculata_contig3469.9249.1|Name=mRNA_H-paniculata_contig3469.9249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig3469:6299..10270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGGTTCCACATCGTCAACCACACCTGCAACAGCGCAGCAAAGCCG
GAGACTACTAGATGACTCTCTCGTGATGTACGGTTCCACATCGTCAACCA
CACCTGCAACAGCGCAGCAAAGCCGGAGACTACTAGATGACTCTCTCGTG
GTCGCAACTGAGACTTCAGGCATGGCAGACGATGTAATGGGGCGATTATA
CGGGCAAAGGCAGGCTTTAGAGTCTTCGAACATGCGGGTCGCAACTGAGA
CTTCAGGCATGGCAGACGATGTAATGGGGCGATTATACGGGCAAAGGCAG
GCTTTAGAGTCTTCGAACATGCGGGTAGGGGAGATGCGAGAGATGACAGA
AGAAGCTCGCGTTTCGTTAAAAGAGATGGAGCGCAAGGCCTTCATGCAGA
AGATTTGCCTCTACTCCACAATCGCGGTGCTGGCGATACTCATCCTTTTG
GTGGCCTACCGAGAAATCACGAACGATGGTAAACTGTTTTAGGTAGGGGA
GATGCGAGAGATGACAGAAGAAGCTCGCGTTTCGTTAAAAGAGATGGAGC
GCAAGGCCTTCATGCAGAAGATTTGCCTCTACTCCACAATCGCGGTGCTG
GCGATACTCATCCTTTTGGTGGCCTACCGAGAAATCACGAACGATGGTAA
ACTGTTTTAG
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