mRNA_H-paniculata_contig3468.9247.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3468.9247.1
Unique NamemRNA_H-paniculata_contig3468.9247.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5JR26_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR26_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.550e-43
Identity = 76/146 (52.05%), Postives = 99/146 (67.81%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCN-RAPPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            +V+A++GQ      RS S ENVT+V TINAAGA + P  I+KGQR    WV +   PPG++Y  T+SS M G V++  ++ F + +    L DGKPH LVLDGHASHV++D++K  +  NIHL QLPSH SH+TQP DV  FG FK
Sbjct:  120 RVVAERGQPVVAQMRSTSRENVTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGDVFIKYIQNFHKQLGERNLLDGKPHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFK 265          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 6.570e-43
Identity = 79/146 (54.11%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCNR-APPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            KVIA+ GQK  G  RSNS ENVTVV TI+ AGA + P  IYKGQR+QA WV  R  PP +  A TDSS M+G  +++ ++ F   + +  L +G PH L LDGHASHVT +++K   E NI L+Q+PSHSSH+ QP DV +FG FK
Sbjct:    2 KVIAESGQKVVGAMRSNSRENVTVVVTISTAGATLAPWIIYKGQRLQADWVEGRNGPPNARLAVTDSSFMQGIAFVNYVRDFHRQLLDRDLINGTPHVLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPLDVGSFGSFK 147          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.940e-42
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCN-RAPPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            +V+A++GQ      RS S EN T+V TINAAGA + P  I+KGQR    WV +   PPG++Y  T+SS M G V++  +K F + + +  L DGKPH LVLDGHASHVT+D++K  +  NIHL QLPSH SH+TQP DV  FG FK
Sbjct:  196 RVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFK 341          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5JRL2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL2_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.430e-42
Identity = 74/146 (50.68%), Postives = 98/146 (67.12%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCN-RAPPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            +V+A++GQ      RS S EN T++ TINAAGA + P FI+KGQR    WV +   PPG++   T+SS M G V++  +K F + + +  L DGKPH LVLDGH SHV++D++K  +  NIHL QLPSH SH+TQP DV  FG FK
Sbjct:   41 RVVAERGQPVVAQMRSTSRENCTIITTINAAGAVLAPTFIFKGQRFNGDWVADLNGPPGAFNDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHTSHVSLDVIKLVISLNIHLVQLPSHMSHITQPLDVAGFGCFK 186          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.600e-42
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCNR-APPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            KVIA+ GQK  G  RSNS +NVTVV TI+AAGA + P  IYKGQR+QA WV  R  PP +  A TDSS M+G+V+++ ++ F   + + GL +G PH LVLDGHASHVT +++K   + NI L+Q+PSHSSH+ QP DV +FG FK
Sbjct:  190 KVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFK 335          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.050e-41
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCNR-APPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            KVI + GQK  G  RSNS ENVTVV TI+AAGA + P  IYKGQR+QA WV  R  PP +  A  DSS M+G+V+++ ++ F   + + GL +G PH LVLDGHASHVT +++K   + NI L+Q+PSHSSH+ QP DV +FG FK
Sbjct:  182 KVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFK 327          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.820e-41
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCNR-APPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            K  A+ GQK     RSNS EN TVV TI+A GA   P  I+KGQR+Q  W   R  P  + Y  TDSS M+G V++  +K F + +++ G+ DGKPH LVLDGHASHV+ +++K  ME NI LFQLPSH+SH+TQP DV AFG FK
Sbjct:  176 KAFAEAGQKVVESMRSNSLENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVLDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFK 321          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5JR11_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR11_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.460e-41
Identity = 74/146 (50.68%), Postives = 95/146 (65.07%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCNR-APPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            +V A++GQ      R+NS EN T+V TINAAGA + P  I+KG R    W+ +R  PPG+ Y  T+SS M G V++  +K F E +    L DGKPH LVLDGHASHV+ ++++     NIHL QLPSH SH+TQP DV  FG FK
Sbjct:  118 RVFAEQGQPVVPQMRANSRENCTIVTTINAAGAVLDPTVIFKGVRFNQDWIADRNGPPGATYTCTESSFMCGDVFIKYIKNFHEQLRRRNLLDGKPHVLVLDGHASHVSFEVIQLAKSLNIHLVQLPSHMSHVTQPLDVAGFGCFK 263          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 8.470e-41
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCNR-APPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            K IA+ GQK  G  RSNS E VTVV TI+AAGA + P  IYKGQR+QA WV  R  PP +  A TDSS M+G+V+++ ++ F   + + GL +G PH LVLDGHASHVT +++K   + NI L+Q+PSHSSH+ QP DV +FG FK
Sbjct:  182 KAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFK 327          
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.050e-40
Identity = 77/146 (52.74%), Postives = 98/146 (67.12%), Query Frame = 1
Query:   10 KVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQAAWVCNR-APPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHALVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK 444
            K  A+ GQK     RSNS EN TVV TI+A GA   P  I+KGQR+Q  W   R  P  + Y  TDSS M+G V++  +K F + +++ G+ DGKPH LVLDGHASHV+ + +K  M+ NI LF+LPSH+SH+TQP DV AFG FK
Sbjct:    2 KAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFK 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3468.9247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR26_9PHAE1.550e-4352.05DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5K717_9PHAE6.570e-4354.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYX7_9PHAE3.940e-4252.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL2_9PHAE4.430e-4250.68DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JK80_9PHAE7.600e-4255.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5E2_9PHAE1.050e-4154.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS6_9PHAE1.820e-4154.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JR11_9PHAE6.460e-4150.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
B2KWI5_ECTSI8.470e-4154.79Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KGL1_9PHAE1.050e-4052.74DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3468contigH-paniculata_contig3468:6745..7188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score100.1
Seed ortholog evalue8.9e-19
Seed eggNOG ortholog7029.ACYPI47057-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Jerky protein homolog-like
EggNOG OGs3A3P5@33154,3BQDY@33208,KOG3105@1,KOG3105@2759
COG Functional cat.B
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.0278997-CDS-H-paniculata_contig3468:6744..71881622930070.0278997-CDS-H-paniculata_contig3468:6744..7188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3468 6745..7188 -
1691481134.6844795-CDS-H-paniculata_contig3468:6744..71881691481134.6844795-CDS-H-paniculata_contig3468:6744..7188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3468 6745..7188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3468.9247.1prot_H-paniculata_contig3468.9247.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3468 6745..7188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3468.9247.1

>prot_H-paniculata_contig3468.9247.1 ID=prot_H-paniculata_contig3468.9247.1|Name=mRNA_H-paniculata_contig3468.9247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
TSDKVIADKGQKTTGVKRSNSSENVTVVATINAAGAKMPPLFIYKGQRVQ
AAWVCNRAPPGSWYAATDSSSMEGSVYLSVMKKFKELINNSGLNDGKPHA
LVLDGHASHVTIDMLKYDMEHNIHLFQLPSHSSHMTQPFDVCAFGLFK
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mRNA from alignment at H-paniculata_contig3468:6745..7188-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3468.9247.1 ID=mRNA_H-paniculata_contig3468.9247.1|Name=mRNA_H-paniculata_contig3468.9247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig3468:6745..7188- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCTGACAAGGTCATCGCCGACAAGGGTCAGAAAACGACTGGCGTGAA GCGCTCAAACTCTTCGGAGAATGTGACGGTTGTGGCAACGATCAACGCAG CCGGCGCCAAGATGCCTCCGTTGTTCATCTACAAGGGACAGCGGGTGCAG GCGGCCTGGGTCTGTAACCGCGCCCCCCCCGGTTCGTGGTACGCCGCGAC TGACTCCTCGTCCATGGAAGGGTCGGTCTACCTCAGCGTCATGAAGAAAT TCAAGGAGCTCATCAACAATAGCGGTCTAAATGATGGCAAGCCCCACGCC CTTGTCCTCGACGGGCACGCTTCGCATGTTACCATCGACATGTTGAAGTA CGACATGGAGCACAACATCCACCTGTTCCAGCTACCGTCACACTCCTCCC ACATGACGCAACCCTTCGACGTTTGCGCGTTCGGTCTCTTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3468:6745..7188-

>mRNA_H-paniculata_contig3468.9247.1 ID=mRNA_H-paniculata_contig3468.9247.1|Name=mRNA_H-paniculata_contig3468.9247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig3468:6745..7188- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCTGACAAGGTCATCGCCGACAAGGGTCAGAAAACGACTGGCGTGAA
GCGCTCAAACTCTTCGGAGAATGTGACGGTTGTGGCAACGATCAACGCAG
CCGGCGCCAAGATGCCTCCGTTGTTCATCTACAAGGGACAGCGGGTGCAG
GCGGCCTGGGTCTGTAACCGCGCCCCCCCCGGTTCGTGGTACGCCGCGAC
TGACTCCTCGTCCATGGAAGGGTCGGTCTACCTCAGCGTCATGAAGAAAT
TCAAGGAGCTCATCAACAATAGCGGTCTAAATGATGGCAAGCCCCACGCC
CTTGTCCTCGACGGGCACGCTTCGCATGTTACCATCGACATGTTGAAGTA
CGACATGGAGCACAACATCCACCTGTTCCAGCTACCGTCACACTCCTCCC
ACATGACGCAACCCTTCGACGTTTGCGCGTTCGGTCTCTTCAAGACGTCT
GACAAGGTCATCGCCGACAAGGGTCAGAAAACGACTGGCGTGAAGCGCTC
AAACTCTTCGGAGAATGTGACGGTTGTGGCAACGATCAACGCAGCCGGCG
CCAAGATGCCTCCGTTGTTCATCTACAAGGGACAGCGGGTGCAGGCGGCC
TGGGTCTGTAACCGCGCCCCCCCCGGTTCGTGGTACGCCGCGACTGACTC
CTCGTCCATGGAAGGGTCGGTCTACCTCAGCGTCATGAAGAAATTCAAGG
AGCTCATCAACAATAGCGGTCTAAATGATGGCAAGCCCCACGCCCTTGTC
CTCGACGGGCACGCTTCGCATGTTACCATCGACATGTTGAAGTACGACAT
GGAGCACAACATCCACCTGTTCCAGCTACCGTCACACTCCTCCCACATGA
CGCAACCCTTCGACGTTTGCGCGTTCGGTCTCTTCAAG
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