mRNA_H-paniculata_contig3467.9246.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI) HSP 1 Score: 508 bits (1309), Expect = 2.580e-157 Identity = 409/1017 (40.22%), Postives = 471/1017 (46.31%), Query Frame = 1
Query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
+VVFGPGGMGFTLMKD VSRALVTRLAPGG AFRLGVRTGDYLVG+DGRR++DYDQLMLLLP RPLRLLFEGAGA LAA P A P+ + + DG D + GG G+E L + E +PR + A E V A++ VV +G VA R K E ANS + S + A + NG XXXX V S L EG+KV + +K +KWRKGLLRRRH DGSWTVRYSGGMEER V VDR+RLR E + S+ A G+ G+ EG XXXX XXXXXX G AA AWA A DR ++FRAPGE DDFF D +G D + + AL Y + ++ AP ME A G G +A P +SR V FPAG MGLTLTKE++GGCSVTKV PGGVA S G+ LG RVCAVNGQPSGTYE TMAVI GSPRPISI+FV G G GGR +GGGP TW DVG+ AT+G MDAANAVA EWG+G T GVL S A + PP PQGFRVHQKHSLMAIPTGVAGG+GNSL +H+T+A+DVSP+M TMSTKK L+D+PG GEFDV+FGE ELGMRLEERGSFK SVV K+TEGGQA+SLGVREGC V+G+NGE+YLSHAHTVATLKHARRP+ VRF+ PD G
Sbjct: 219 EVVFGPGGMGFTLMKDAVSRALVTRLAPGGMAFRLGVRTGDYLVGVDGRRLHDYDQLMLLLPRTPRPLRLLFEGAGAALAASPPAAPGFASAPTAVGEATAAAPDQRDG-------------------------------------------DSSXXXXXXXXXXXGGVRDGEEPPCPVVGVA----------------------------------------------------------------------------------------------------------------------LPEAVAEPSDRAQEDKPRQKEPAVVSEEGQPSDNAVNGAAVAAAAVVVEEGDIGAVATVEEVAVEARAKQESRETHAAANSFSSPSAAVEGEEAERTRESVAHNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGGKAEQGLGEGSKVAVQDKKKSSKWRKGLLRRRHGDGSWTVRYSGGMEERRVAVDRMRLRVPER--TSPPPXXXXXXXXXXXXXSTHVTAATGTSGERVEGRRRSRKAXXXXEEKISPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGWEAAASAPGAWAAADTAQDRHEDFRAPGELRDDFFADNDGSGSSSRGDEEAVSALAGYGRQDPGAAXXXXXXXXXXXXXXXXAPRRMEGFGGGGRGWRGEGEV----ASGGGGSVGKAAQQPV----KSRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMPSTGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAVEWGLGANTPGVLAGAHSSGAGDIPPAPQGFRVHQKHSLMAIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGEEVGEFDVRFGEGELGMRLEERGSFKASSVVVKITEGGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHARRPVVVRFRLPDASG 1064
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Match: W7TXK3_9STRA (Adp-ribosylation factor gtpase-activating (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXK3_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.410e-30 Identity = 105/297 (35.35%), Postives = 145/297 (48.82%), Query Frame = 1
Query: 2068 QSRELVVTFPAGSMGLTLTKELTGGCSVTKVAPGGVAQSNGIILGLRVCAVNGQPSGTYEQTMAVIAGSPRPISISFVEGGGTGGRPMPLGGGPGTPPQTWTDVGMIATVGLMDAANAVATEW-GIGTQTSGVLGQVDSASNSPPIPQGFRVHQKHSLM-----AIPTGVAGGYGNSLLRHKTYAIDVSPEMTTMSTKKVLADSPGLASGEFDVKFGERELGMRLEE------RGSFKMLSVVSKVTEGGQAISLGVREGCTVIGVNGEEYLSHAHTVATLKHARRPITVRFKAPDT 2922
Q+RE V F G MGLTL+K G VT VAP G A G+ +G + +++ Q Y+ MA + PRP+ + F R M GM +T G + A W G G SG G+ + + +V +H+ + A+P+ +A +S +Y + +TT K L + P +GEFD F E LGMRLEE G K + V +VT GG A S GVR+GC V+GVNGE ++SHAHTVATLKH +RP+ VRF+ P +
Sbjct: 171 QAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFR-------RRME---------------GMGSTEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFG----KSLQVLTRHASLGPGAAAVPS-LASASSSSFTSGGSYPLGGGSGLTT---KVPLTEDPD--AGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Match: A0A4D9D4X6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4X6_9STRA) HSP 1 Score: 137 bits (344), Expect = 6.750e-29 Identity = 102/292 (34.93%), Postives = 135/292 (46.23%), Query Frame = 1
Query: 2068 QSRELVVTFPAGSMGLTLTKELTGGCSVTKVAPGGVAQSNGIILGLRVCAVNGQPSGTYEQTMAVIAGSPRPISISF---VEGGGTGGRPMPLGGGPGTPPQTWTDVGMIATVGLMDAANAVATEWGIGTQTSGVLGQVDSASNSPPIPQGFRVHQKHSLMAIPTGVAGGYGNSLLRHKTYAIDVSPEMTTMSTKKVLADSPGLASGEFDVKFGERELGMRLEE------RGSFKMLSVVSKVTEGGQAISLGVREGCTVIGVNGEEYLSHAHTVATLKHARRPITVRFKAP 2916
Q+RE V F G MGLTL+K G VT VAP G A G+ +G + +++ Q Y+ MA + PRP+ + F +EG G+ R + GGP P W G ++ + A G G + + P + GG G ++TK L PG +GEFD F E LGMRLEE G K + V +VT GG A S GVR+GC V+GVNGE ++SHAHTVATLKH +RP+ VRF+ P
Sbjct: 747 QAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRRRMEGMGSTERAV---GGPRAPGPRWLGSGASSS-----GSGGKAFAGGFGKSLQVLTRHASLGPGTAAAPSLXXXXXXXXXXXXXXPLGGGSG-------------------LTTKVPLTQDPG--TGEFDAWFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLP 1009
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Match: A0A7S2XZL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL0_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.430e-25 Identity = 67/139 (48.20%), Postives = 85/139 (61.15%), Query Frame = 1
Query: 2539 MAIPTGVAGGYGNSL-------------LRHKTYAIDVSPEMTTMSTKKVLADSPGLASGEFDVKFGERELGMRLEER--GSFKMLSVVSKVTEGGQAISLGVREGCTVIGVNGEEYLSHAHTVATLKHARRPITVRFK 2910
MA P VAGG+G +L + + + + MT M+TKK L GL GE DV FG LG+RLEER G M+SVV+ VTE GQA GV G T+IG+NGE++LSHAHTV+TLKH +RPI+VR +
Sbjct: 22 MAAPPAVAGGFGKTLNVDSGDNEANPDSMENAEGSSGGAASMTGMTTKKELGS--GLEDGEVDVTFGPGPLGLRLEERPGGGGAMISVVTSVTEAGQADKQGVEVGSTIIGLNGEQFLSHAHTVSTLKHGKRPISVRLR 158
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Match: A0A8J2SXS4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXS4_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 3.490e-17 Identity = 53/100 (53.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 2620 EMTTMSTKKVLADSPGLASGEFDVKFGERELGMRLEERGSFKMLSVVSKVTEGGQAISLGVREGCTVIGVNGEEYLSHAHTVATLKHARRPITVRFKAPD 2919
E+ ST KV SP A+ E+DV F LG RLEERG +S+V+ V GQA + GVR G V+GVNGE YLSHAHT ATLKH RRP+ +R + D
Sbjct: 447 ELDDGSTTKVGLPSPDDAN-EYDVTFESGPLGFRLEERGGLVAVSLVTSVDAAGQAAAAGVRAGDVVLGVNGERYLSHAHTAATLKHGRRPVELRLRHSD 545
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Match: A0A835ZHI9_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI9_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.920e-14 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 2716 MRLEER---------GSFKMLSVVSKVTEGGQAISLGVREGCTVIGVNGEEYLSHAHTVATLKHARRPITVRFK 2910
MR+EE+ GS + +VV++V+E GQA GV+ GC ++GVNGE+YL HAH VA LKH RRP+TVR +
Sbjct: 1 MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLR 74
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Match: A0A7R9U3N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N9_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.940e-5 Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 1
Query: 10 FGPGGMGFTLMKDGVSRALVTRLAPGGTAFRLGVRTGDYLVGLDGRRVYDYDQLMLLLPYATRPLRLLF------EGAG------ADLAAPVADADPVQPSTSRGSMEKRGNS 312
FG G MG L + RA V+ + P G A G+R GD++ G++G+RV DYD++M L+ RP+ + F +GAG A A+ D V+ STS + R S
Sbjct: 169 FGEGRMGLRLTRAKNMRATVSMITPNGNADVQGLRVGDFVCGVNGKRVGDYDEVMELVQRLKRPVSITFRRITRCDGAGSGQDPEARKASEARDDQAVRRSTSSECLTSRAAS 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3467.9246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3467.9246.1 >prot_H-paniculata_contig3467.9246.1 ID=prot_H-paniculata_contig3467.9246.1|Name=mRNA_H-paniculata_contig3467.9246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=973bp MGFTLMKDGVSRALVTRLAPGGTAFRLGVRTGDYLVGLDGRRVYDYDQLMback to top mRNA from alignment at H-paniculata_contig3467:6411..16939- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3467.9246.1 ID=mRNA_H-paniculata_contig3467.9246.1|Name=mRNA_H-paniculata_contig3467.9246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10529bp|location=Sequence derived from alignment at H-paniculata_contig3467:6411..16939- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3467:6411..16939- >mRNA_H-paniculata_contig3467.9246.1 ID=mRNA_H-paniculata_contig3467.9246.1|Name=mRNA_H-paniculata_contig3467.9246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5838bp|location=Sequence derived from alignment at H-paniculata_contig3467:6411..16939- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |