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Homology
BLAST of mRNA_H-paniculata_contig3466.9244.1 vs. uniprot
Match: D8LBP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP2_ECTSI) HSP 1 Score: 184 bits (467), Expect = 1.460e-46 Identity = 205/567 (36.16%), Postives = 268/567 (47.27%), Query Frame = 1
Query: 556 MACMLYLRKRGQA---------VRRGIPRDQGIVVQSTEPMRDEKPSSPMLL-TKVASIFSRAPPPCEPTSAPAPFGSVGGEISTVAKPTEMRVPPTTIPSRCYRSSPPTPFPFRMERDIVTFT-SQPEERGDSNAAIVQEAQRRARRRALTQCKRASAEEAQNLKDCEGAKKS-TPADVERLKASRRAAITRVAYRKQQEKAQKHEVERAAMXXXXXXXXELASKADAIRAVAAVRAANAVAENMRKERQLENTREEEARAKREKVAAVLARKDSEVLERERQVRNETIRRIXXXXXXXELERQREEDEQIERRRLYEAGERAAAAAPAGLGGLARPPMSLPQPVVQSARSFFSVGTRPSSRQSIGLDN-TGIIDDG------YNDADPTIV--ILNEISSEEAPDGSDEDRTRGRL------HHQNPSGQK--VAAHHPSRRNFSPDTDNAEDNGLLEGTTEQWATTTSTPVIIPKSTDGGNSRVGADGSAARKRAVLSP-EPSTGVLRGPEACLGAPTVSSASSSGSAG--SSVQGRRRVKTTPVWKRPVVPLSKPYVPVPRKN 2160
M CMLYLRK+ + V+ G V E ++E P + L +KV F+ PPP T APAPFGSVG T M PSR + PP+PF MER++ F S+P+++ ++A+V EAQRRARRRAL+ KR +AEE + E AKK T AD+ERLKASRRAA+ R A + Q+ XXXXXXXX R + AE ++ERQL R+ EA AKRE+VAAVLA +++ ERER+VRNET RI EL QR+EDE++E R+YEAGER +P + P P V SARSFFS+ S +++ DN G+ + DP + + + + + G +D + L HHQ + Q+ A H +P G V RK +LSP PS A A T +AS+ GS GRRR+ TTPVWKRP VPLSKPYVPVP+K+
Sbjct: 1 MECMLYLRKKARKKKVMTATTHVKDSATGQTGRVAALGESGKEEAPCAAALAPSKVECSFTPVPPPQSATMAPAPFGSVG---ETPKPAVTMSAGDRAPPSRT--TGPPSPFSAGMERELDVFVMSRPKDKSGMSSAVVLEAQRRARRRALSMQKRKTAEEERKAGALESAKKPPTVADIERLKASRRAALARAASQIQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSIVAAEKKQRERQLGLVRQAEAEAKRERVAAVLAYDEAQADERERRVRNETYARIRREERRRELALQRQEDERVEMMRMYEAGERYKGTSPVATV------LPAPVPAVHSARSFFSITDSASIAETVVGDNGPGVASSASRRRKTWRRVDPDHIEEVQDALEGACSNSGGAQDVRKAELDALKSTHHQPQANQQGSTPAQHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDDSGEMVTVSR---RLRKPPLLSPTRPSFSSRYARSASASATTGVAASAYGSRNRKQGALGRRRISTTPVWKRPAVPLSKPYVPVPQKD 553
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_003250.1 |
| Exons | 5 |
| Model size | 2184 |
| Cds size | 2184 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3466.9244.1 >prot_H-paniculata_contig3466.9244.1 ID=prot_H-paniculata_contig3466.9244.1|Name=mRNA_H-paniculata_contig3466.9244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=728bp
MQPQPCTQRPRSPPPFPQSSPPPLHERERFVVCTYPPQQGDPSFDLGNLS LIDRARALCAAADGVQRATIEASRRIAAIHNRSSKRPGIRENEKPKKPPK EPPDICARPPSDVPPPRGEGWRRVGPVTAVRGSNRLSAPPQTRRALTRNV EVFVGGKKYCIVPADIEPGGGFCVTLDRDFEGETNMACMLYLRKRGQAVR RGIPRDQGIVVQSTEPMRDEKPSSPMLLTKVASIFSRAPPPCEPTSAPAP FGSVGGEISTVAKPTEMRVPPTTIPSRCYRSSPPTPFPFRMERDIVTFTS QPEERGDSNAAIVQEAQRRARRRALTQCKRASAEEAQNLKDCEGAKKSTP ADVERLKASRRAAITRVAYRKQQEKAQKHEVERAAMEEAKRREAELASKA DAIRAVAAVRAANAVAENMRKERQLENTREEEARAKREKVAAVLARKDSE VLERERQVRNETIRRIRREEKRRELERQREEDEQIERRRLYEAGERAAAA APAGLGGLARPPMSLPQPVVQSARSFFSVGTRPSSRQSIGLDNTGIIDDG YNDADPTIVILNEISSEEAPDGSDEDRTRGRLHHQNPSGQKVAAHHPSRR NFSPDTDNAEDNGLLEGTTEQWATTTSTPVIIPKSTDGGNSRVGADGSAA RKRAVLSPEPSTGVLRGPEACLGAPTVSSASSSGSAGSSVQGRRRVKTTP VWKRPVVPLSKPYVPVPRKNGCCFIVR* back to topmRNA from alignment at H-paniculata_contig3466:9946..13432- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3466.9244.1 ID=mRNA_H-paniculata_contig3466.9244.1|Name=mRNA_H-paniculata_contig3466.9244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3487bp|location=Sequence derived from alignment at H-paniculata_contig3466:9946..13432- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCAACCTCAACCTTGTACGCAGAGGCCAAGATCGCCGCCACCTTTTCC
ACAATCTTCTCCACCTCCCCTACATGAACGAGAAGTAAGTTCTATTGGGT
AGAGCTGGTAGTCGAATATTGGAGTTGCGAGTCCGGGAATGCAGCCGATC
GGTCGAATCTGGAGTACAAACTTAACCACAAGATTTGGCCTGGAAATTTG
CAGATTCGGCGGTATGGTGATGTGGTCTACTCGCTCGGTGTTTCCCCTGA
ATAGTTCGCCTCTGCCTACTTCCTTCTGTTACCTCCTATGAACACTACTG
CACACAACAGGCAGCAAGCCCTATACTTGTAAAGCAGGATAGCATGGGTG
CCGCTCGGGATACGTTCGCTTGTACTGAACAAATCCCCCTAAGGTCCACC
AGCGTTTCGTCGTATGTACGTATCCCCCCCAGCAAGGTGATCCATCTTTC
GACTTGGGAAACCTCAGTCTCATCGACAGAGCACGTGCTCTCTGCGCAGC
TGCCGATGGTGTACAAAGGGCTACGATAGAGGCCAGTCGCCGTATTGCCG
CCATCCACAATAGAAGTTCAAAACGACCAGGTATAAGAGAAAATGAAAAG
CCAAAAAAGCCGCCGAAAGAGCCCCCAGATATTTGCGCCCGGCCACCGTC
AGATGTACCCCCTCCACGAGGAGAGGGATGGAGACGAGTTGGTCCGGTGA
CGGCTGTTCGCGGTTCGAACAGACTATCTGCACCGCCTCAAACGCGCCGG
GCACTTACGCGTAACGTTGAAGTATTTGTGGGCGGCAAGAAATACTGTAT
TGTCCCGGCGGATATTGAGCCGGGTGGTGGCTTCTGCGTAACGTTAGACC
GGGATTTTGAGGGCGAAACGAATATGGCGTGTATGTTGTATTTACGGAAG
CGGGGCCAAGCAGTACGACGAGGAATTCCGCGCGATCAGGGCATAGTGGT
ACAATCAACGGAACCAATGCGAGATGAGAAACCCAGCTCGCCGATGTTGC
TAACTAAGGTGAGGACGAGCGTTGTTTGCTATCCAAAGTGTAGGTATAGT
ATACTCTGTAATTGTAAATAACTATCCATGCATCTACATCGGTGTGAATT
CAATAACGTCGATTAATCCGACTAGTACGCACCTCGAGGATGAAATTTAA
TCAAAAACAACTGGTCTAACCTAGTCGCCATTCACTCCTTCTCCGATCCT
CATATTAGTTTCTACTCTATACAGGTGGCTTCGATATTTTCCCGCGCTCC
TCCTCCATGCGAACCCACCTCTGCTCCGGCTCCGTTCGGCTCGGTAGGGG
GGGAAATTTCAACCGTTGCCAAACCAACTGAGATGCGCGTACCACCGACA
ACGATCCCTTCAAGGTGCTATCGTTCCTCACCACCAACTCCTTTTCCGTT
CCGCATGGAACGAGATATTGTTACGTTCACGAGTCAGCCTGAGGAGAGAG
GGGATTCCAATGCCGCCATCGTTCAAGAAGCACAGCGAAGAGCTCGTCGT
CGGGCCTTGACACAGTGCAAACGAGCGTCGGCGGAAGAAGCGCAGAACTT
AAAGGACTGTGAGGTGGGTATGTGCTTGTTTCGGAGGGCGGATATCATCA
GTATCACTGCTCAACAGTTCAGAAGGAAAAGCTTCCAAACTAGCGCACCG
CCGCGACACTCGCTTCAATAGGTGTCAGGGTACTACGGGAACGGGCAAGT
TGAAGGTTCAACCACGCTTGCTTGAGATGGTCAGATTGCCTATGTCAAGA
GGATGGAAGGAAGTGCCAGTCTGGTGTGCAATAATCGACTTTTTAGTACG
TTGACGCTGCAGAGTTGACCACGATCAACCCATGTTCATCCTTGTCAGTG
AACAAAAAGCAACAAAAAGATTAATCTGTGTCAGAGCGTCATGGGATTGC
TGATGCATGTTCTTGATTTTCCTTCCACGCCAGCAAAAACCCAAAGCCTG
TTCGTGCTCTCCGGTTCTCGTCGGGAACACTTTCCTCAATCTGAAGGGAG
CGAAGAAATCCACCCCAGCAGACGTGGAGAGATTGAAGGCTTCTCGTCGA
GCGGCCATAACAAGGGTAGCATATAGAAAACAGCAAGAAAAGGCGCAAAA
ACACGAGGTCGAGCGGGCCGCAATGGAAGAAGCAAAGCGAAGGGAAGCTG
AGCTTGCCTCAAAGGCAGACGCTATAAGAGCGGTGGCCGCGGTTCGCGCA
GCGAACGCGGTTGCAGAAAATATGCGGAAAGAGCGACAACTAGAAAACAC
TAGGGAAGAAGAAGCGCGCGCAAAGCGAGAAAAAGTCGCGGCGGTGCTCG
CACGCAAGGATTCCGAAGTACTTGAGCGAGAGCGCCAAGTTAGGAACGAA
ACGATCAGGAGGATTAGGCGCGAGGAGAAGAGACGAGAGCTAGAGCGACA
GCGTGAAGAGGATGAACAGATAGAGAGGAGGCGGTTGTACGAAGCGGGGG
AGAGGGCGGCGGCGGCGGCCCCTGCCGGGCTTGGGGGACTCGCAAGACCG
CCGATGTCGTTGCCGCAGCCGGTCGTCCAGTCTGCTCGATCCTTTTTTAG
CGTGGGCACTCGTCCGTCATCCCGGCAGTCCATTGGGTTGGACAACACTG
GAATTATTGATGACGGATATAATGATGCGGACCCAACAATAGTCATTTTG
AACGAAATTTCATCTGAAGAAGCACCGGACGGCAGCGATGAAGATAGAAC
GAGGGGTAGATTGCACCACCAAAATCCCTCGGGACAAAAAGTCGCTGCGC
ATCACCCCTCGAGAAGGAATTTTTCTCCTGATACTGACAACGCGGAGGAT
AACGGTTTACTGGAAGGAACCACAGAGCAATGGGCGACGACGACCTCAAC
ACCGGTGATTATTCCGAAGAGCACAGACGGCGGGAATAGTCGGGTCGGTG
CGGATGGCTCGGCCGCGAGAAAGAGAGCGGTGGACGCCGCGGAAGAAAAC
AAATACTTGCGGCGACATAATCGACAACGGGGAGTGTACAGTCAGATCTG
TCGGCAAGACCAGCAGCGCCCAAAACCGCAACAAAGAAGCAACGACGGCG
GCGGCGGGAACCAGCATAACACTCGTTCTCCTCATGGCGCAGGGCGGGGA
GCATCCACAATAGATGGCGGAAGCTGCCACTGCATCGGCGACCAAGAGCC
TCCGAGCACAGACACTACGAGATACGGCCAAAACAGCAACAACCGATGTG
CGTCTGAGTCTGGGCGGGTTGAAAGGCGCCACGGTGATCGCGAGAAAGAG
ATAGGGGCTTCCAAGGTTTTGTCACCCGAGCCGTCGACGGGGGTACTGAG
GGGCCCTGAGGCTTGTTTGGGTGCGCCTACGGTCAGCAGCGCTTCGAGTA
GCGGTAGTGCGGGGTCATCGGTGCAAGGCAGGAGGAGGGTAAAGACGACC
CCTGTGTGGAAGCGGCCTGTTGTTCCACTGAGCAAGCCATATGTGCCTGT
GCCACGCAAGAATGGTTGCTGTTTCATTGTGCGATAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig3466:9946..13432- >mRNA_H-paniculata_contig3466.9244.1 ID=mRNA_H-paniculata_contig3466.9244.1|Name=mRNA_H-paniculata_contig3466.9244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4368bp|location=Sequence derived from alignment at H-paniculata_contig3466:9946..13432- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCAACCTCAACCTTGTACGCAGAGGCCAAGATCGCCGCCACCTTTTCC ACAATCTTCTCCACCTCCCCTACATGAACGAGAAATGCAACCTCAACCTT GTACGCAGAGGCCAAGATCGCCGCCACCTTTTCCACAATCTTCTCCACCT CCCCTACATGAACGAGAACGTTTCGTCGTATGTACGTATCCCCCCCAGCA AGGTGATCCATCTTTCGACTTGGGAAACCTCAGTCTCATCGACAGAGCAC GTGCTCTCTGCGCAGCTGCCGATGGTGTACAAAGGGCTACGATAGAGGCC AGTCGCCGTATTGCCGCCATCCACAATAGAAGTTCAAAACGACCAGGTAT AAGAGAAAATGAAAAGCCAAAAAAGCCGCCGAAAGAGCCCCCAGATATTT GCGCCCGGCCACCGTCAGATGTACCCCCTCCACGAGGAGAGGGATGGAGA CGAGTTGGTCCGGTGACGGCTGTTCGCGGTTCGAACAGACTATCTGCACC GCCTCAAACGCGCCGGGCACTTACGCGTAACGTTGAAGTATTTGTGGGCG GCAAGAAATACTGTATTGTCCCGGCGGATATTGAGCCGGGTGGTGGCTTC TGCGTAACGTTAGACCGGGATTTTGAGGGCGAAACGAATATGGCGTGTAT GTTGTATTTACGGAAGCGGGGCCAAGCAGTACGACGAGGAATTCCGCGCG ATCAGGGCATAGTGGTACAATCAACGGAACCAATGCGAGATGAGAAACCC AGCTCGCCGATGTTGCTAACTAAGCGTTTCGTCGTATGTACGTATCCCCC CCAGCAAGGTGATCCATCTTTCGACTTGGGAAACCTCAGTCTCATCGACA GAGCACGTGCTCTCTGCGCAGCTGCCGATGGTGTACAAAGGGCTACGATA GAGGCCAGTCGCCGTATTGCCGCCATCCACAATAGAAGTTCAAAACGACC AGGTATAAGAGAAAATGAAAAGCCAAAAAAGCCGCCGAAAGAGCCCCCAG ATATTTGCGCCCGGCCACCGTCAGATGTACCCCCTCCACGAGGAGAGGGA TGGAGACGAGTTGGTCCGGTGACGGCTGTTCGCGGTTCGAACAGACTATC TGCACCGCCTCAAACGCGCCGGGCACTTACGCGTAACGTTGAAGTATTTG TGGGCGGCAAGAAATACTGTATTGTCCCGGCGGATATTGAGCCGGGTGGT GGCTTCTGCGTAACGTTAGACCGGGATTTTGAGGGCGAAACGAATATGGC GTGTATGTTGTATTTACGGAAGCGGGGCCAAGCAGTACGACGAGGAATTC CGCGCGATCAGGGCATAGTGGTACAATCAACGGAACCAATGCGAGATGAG AAACCCAGCTCGCCGATGTTGCTAACTAAGGTGGCTTCGATATTTTCCCG CGCTCCTCCTCCATGCGAACCCACCTCTGCTCCGGCTCCGTTCGGCTCGG TAGGGGGGGAAATTTCAACCGTTGCCAAACCAACTGAGATGCGCGTACCA CCGACAACGATCCCTTCAAGGTGCTATCGTTCCTCACCACCAACTCCTTT TCCGTTCCGCATGGAACGAGATATTGTTACGTTCACGAGTCAGCCTGAGG AGAGAGGGGATTCCAATGCCGCCATCGTTCAAGAAGCACAGCGAAGAGCT CGTCGTCGGGCCTTGACACAGTGCAAACGAGCGTCGGCGGAAGAAGCGCA GAACTTAAAGGACTGTGAGGTGGCTTCGATATTTTCCCGCGCTCCTCCTC CATGCGAACCCACCTCTGCTCCGGCTCCGTTCGGCTCGGTAGGGGGGGAA ATTTCAACCGTTGCCAAACCAACTGAGATGCGCGTACCACCGACAACGAT CCCTTCAAGGTGCTATCGTTCCTCACCACCAACTCCTTTTCCGTTCCGCA TGGAACGAGATATTGTTACGTTCACGAGTCAGCCTGAGGAGAGAGGGGAT TCCAATGCCGCCATCGTTCAAGAAGCACAGCGAAGAGCTCGTCGTCGGGC CTTGACACAGTGCAAACGAGCGTCGGCGGAAGAAGCGCAGAACTTAAAGG ACTGTGAGGGAGCGAAGAAATCCACCCCAGCAGACGTGGAGAGATTGAAG GCTTCTCGTCGAGCGGCCATAACAAGGGTAGCATATAGAAAACAGCAAGA AAAGGCGCAAAAACACGAGGTCGAGCGGGCCGCAATGGAAGAAGCAAAGC GAAGGGAAGCTGAGCTTGCCTCAAAGGCAGACGCTATAAGAGCGGTGGCC GCGGTTCGCGCAGCGAACGCGGTTGCAGAAAATATGCGGAAAGAGCGACA ACTAGAAAACACTAGGGAAGAAGAAGCGCGCGCAAAGCGAGAAAAAGTCG CGGCGGTGCTCGCACGCAAGGATTCCGAAGTACTTGAGCGAGAGCGCCAA GTTAGGAACGAAACGATCAGGAGGATTAGGCGCGAGGAGAAGAGACGAGA GCTAGAGCGACAGCGTGAAGAGGATGAACAGATAGAGAGGAGGCGGTTGT ACGAAGCGGGGGAGAGGGCGGCGGCGGCGGCCCCTGCCGGGCTTGGGGGA CTCGCAAGACCGCCGATGTCGTTGCCGCAGCCGGTCGTCCAGTCTGCTCG ATCCTTTTTTAGCGTGGGCACTCGTCCGTCATCCCGGCAGTCCATTGGGT TGGACAACACTGGAATTATTGATGACGGATATAATGATGCGGACCCAACA ATAGTCATTTTGAACGAAATTTCATCTGAAGAAGCACCGGACGGCAGCGA TGAAGATAGAACGAGGGGTAGATTGCACCACCAAAATCCCTCGGGACAAA AAGTCGCTGCGCATCACCCCTCGAGAAGGAATTTTTCTCCTGATACTGAC AACGCGGAGGATAACGGTTTACTGGAAGGAACCACAGAGCAATGGGCGAC GACGACCTCAACACCGGTGATTATTCCGAAGAGCACAGACGGCGGGAATA GTCGGGTCGGTGCGGATGGCTCGGCCGCGAGAAAGAGAGCGGGAGCGAAG AAATCCACCCCAGCAGACGTGGAGAGATTGAAGGCTTCTCGTCGAGCGGC CATAACAAGGGTAGCATATAGAAAACAGCAAGAAAAGGCGCAAAAACACG AGGTCGAGCGGGCCGCAATGGAAGAAGCAAAGCGAAGGGAAGCTGAGCTT GCCTCAAAGGCAGACGCTATAAGAGCGGTGGCCGCGGTTCGCGCAGCGAA CGCGGTTGCAGAAAATATGCGGAAAGAGCGACAACTAGAAAACACTAGGG AAGAAGAAGCGCGCGCAAAGCGAGAAAAAGTCGCGGCGGTGCTCGCACGC AAGGATTCCGAAGTACTTGAGCGAGAGCGCCAAGTTAGGAACGAAACGAT CAGGAGGATTAGGCGCGAGGAGAAGAGACGAGAGCTAGAGCGACAGCGTG AAGAGGATGAACAGATAGAGAGGAGGCGGTTGTACGAAGCGGGGGAGAGG GCGGCGGCGGCGGCCCCTGCCGGGCTTGGGGGACTCGCAAGACCGCCGAT GTCGTTGCCGCAGCCGGTCGTCCAGTCTGCTCGATCCTTTTTTAGCGTGG GCACTCGTCCGTCATCCCGGCAGTCCATTGGGTTGGACAACACTGGAATT ATTGATGACGGATATAATGATGCGGACCCAACAATAGTCATTTTGAACGA AATTTCATCTGAAGAAGCACCGGACGGCAGCGATGAAGATAGAACGAGGG GTAGATTGCACCACCAAAATCCCTCGGGACAAAAAGTCGCTGCGCATCAC CCCTCGAGAAGGAATTTTTCTCCTGATACTGACAACGCGGAGGATAACGG TTTACTGGAAGGAACCACAGAGCAATGGGCGACGACGACCTCAACACCGG TGATTATTCCGAAGAGCACAGACGGCGGGAATAGTCGGGTCGGTGCGGAT GGCTCGGCCGCGAGAAAGAGAGCGGTTTTGTCACCCGAGCCGTCGACGGG GGTACTGAGGGGCCCTGAGGCTTGTTTGGGTGCGCCTACGGTCAGCAGCG CTTCGAGTAGCGGTAGTGCGGGGTCATCGGTGCAAGGCAGGAGGAGGGTA AAGACGACCCCTGTGTGGAAGCGGCCTGTTGTTCCACTGAGCAAGCCATA TGTGCCTGTGCCACGCAAGAATGGTTGCTGTTTCATTGTGCGATAAGTTT TGTCACCCGAGCCGTCGACGGGGGTACTGAGGGGCCCTGAGGCTTGTTTG GGTGCGCCTACGGTCAGCAGCGCTTCGAGTAGCGGTAGTGCGGGGTCATC GGTGCAAGGCAGGAGGAGGGTAAAGACGACCCCTGTGTGGAAGCGGCCTG TTGTTCCACTGAGCAAGCCATATGTGCCTGTGCCACGCAAGAATGGTTGC TGTTTCATTGTGCGATAA back to top
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