mRNA_H-paniculata_contig3466.9243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A6H5KPI6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPI6_9PHAE) HSP 1 Score: 473 bits (1216), Expect = 1.780e-145 Identity = 306/633 (48.34%), Postives = 377/633 (59.56%), Query Frame = 3
Query: 1422 RDVPRFLRPVMLMLTMSILAIVGTTIEHGGWKRMGMLGLHS----------------VFCPAVHAAGGAQLPEAVVDDIFDRADKDHDGVIADEEIQYLVEGAGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKN-EGEGSLSFPVHKFVLRRAPLEQREATSAVLGAGQWTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHSSAAEIDVVVATDDCVE-----FWWLGSGGAS----------IAGLDYLLGIVVAILSLILGTAYVTCYAAPP---RRVRPEALRSLS-------------------KSDRGNSQEGGAVSVTG------AAVI--------KGSSSSPRS-STGASGGGLSTSSIPREPSIVNSSRRLLRTESVPVKKYNANHEVVTGTLSERRVNGSGXXXXXXXXXXXXXXXGGLDSRPEISAAIA-SMRKEAARRLMTR-QSTSHEDKELCKLCGREWKWFNRRGKHTCCNCHELFCDK--CGVVSHTFWACPVGGSCTCSEC 3101
R+VPRFLRPVM++LT+S+LAI G +F PA +AAGG QLPEAVVDDIF+ ADKD +GVI DEEIQYLVE AGGSRLDDASEI AGVASVIKNLD NADH LSRSDL +W RLGTLLTVDE A+WV+HA QLPQ+VAD F +NMVTGYDFPELAA+QG LLEQDLGITRPAF++ LVRSM+WKLWGMGEEPAAP G RAT+++CGA+SLEW++ LSFPVHK VLRRA L G W TVM G FFD+ ++PGA YRY+LQAWNALGHS + E+DVV +++DC FW G G + GL + VA+ S + + R + + S +S+R Q G A++ T AA + +G +SSP+S + SG G + PR + + S R + + + A+ +V S XXXXXXXXXXXX G+ S AAI S+R+E A+R+M S+S +DK++CK CG+EW+W+ RRGKHTCC CHE FCD+ CG SH F ACPVGG+C CS C
Sbjct: 11 REVPRFLRPVMVLLTLSLLAIGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGPAAYAAGGVQLPEAVVDDIFEHADKDKNGVIGDEEIQYLVERAGGSRLDDASEIEAGVASVIKNLDRNADHALSRSDLNVYWDRLGTLLTVDEAAQWVLHAAQLPQEVADAFVNNMVTGYDFPELAARQGALLEQDLGITRPAFKRNLVRSMQWKLWGMGEEPAAPAGLRATSSACGAVSLEWDQTCPANSELSFPVHKHVLRRALLGAEGERD-----GGWVTVMAGPGGTFFDAGLQPGAAYRYALQAWNALGHSGSVEVDVVASSEDCAPGRTSWFWSPGGGXXXXXXXXXXXXXVGGLVVATAVTVAVASCLRALSXXXXXXXXXXVRRGASGDVVGSXXXXXXXXXXXXXXXXXXXRRESERMRQQPGAAITGTAGNSAMAAAAVSDRDGDKSRGGASSPKSVHSNGSGWGDRERAEPRTKMLGSGSTRPVSSRRTKERLRRASSDV-----SPPXXXXXXXXXXXXXXXXXXLARAGVSS-----AAIGDSVRRERAKRMMMYGHSSSRDDKDVCKECGKEWRWY-RRGKHTCCKCHEQFCDRKECGSHSHAFGACPVGGTCMCSSC 627
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S4V3N0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V3N0_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.450e-43 Identity = 99/284 (34.86%), Postives = 151/284 (53.17%), Query Frame = 3
Query: 1572 GGAQLPEAVVDDIFDRADKDHDGVIADEEI-QYLVEGAGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKFVLRRAPLE------QREATSAVLGAG--------------------QWTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHSSAAEIDV 2342
G EA F D+D DG++ E+ +L E GG+ D +E+ GV +++ LD N D L +SD+ +WK L +LL DEVA+WVVHAVQLP+ + + FR NMVTGYDFPEL G+ + +LGI R +FRK++VR + ++ G+G P P + SC +++ W+++ EG FPVH + ++R + R+ + G G W T+ G + F DS ++ G Y Y +QAWN++G S+ A +D+
Sbjct: 128 GDKHRDEASAFSFFSSVDEDGDGMLEPPEVANFLRESIGGTAFDTQAEVETGVNKIMEKLDRNHDLGLDKSDVEAYWKHLESLLNADEVADWVVHAVQLPEYLGNIFRENMVTGYDFPELVENDGEAIRTELGIERSSFRKKIVRHIHARMLGIGSTPTIPSEIKHKLESCSTVNISWDRSTAEG---FPVHSYRIKRRAVGLHDGDGPRKVITLDAGPGTHHMVNSPSNVQSLSLPLASDWATIYVGGESEFVDSGLELGHNYVYRVQAWNSVGRSAWATVDI 408
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S1VXY7_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VXY7_9STRA) HSP 1 Score: 176 bits (446), Expect = 9.010e-42 Identity = 98/262 (37.40%), Postives = 141/262 (53.82%), Query Frame = 3
Query: 1611 FDRADKDHDGVIADEEIQYLVEGAGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKFVLRRAPLEQREATSAVLGAG------------------QWTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHSSAAEIDV 2342
FD DKD DG I EE+ ++ G L+ + + V +V+ LD N D+ L +D+ +W +L TLLT +EVAEW+V+AVQLP V F + VTGYDFPE+ GK+L DLGI++ +FR ++VR M+ ++ G+G P P F SC A+SL WE+ G FPVH + ++R + T A+ G W T+ G+D F DS ++ G Y Y +QAWN++G S ID+
Sbjct: 111 FDSIDKDGDGQIEPEEVAMFLKNQIGE-LETQQAVDSEVVTVMARLDQNHDNGLGMADMHEYWMQLETLLTAEEVAEWIVYAVQLPGSVGKMFLEHSVTGYDFPEIVENGGKILSDDLGISKSSFRNKIVRQMQARMLGIGGNPEMPSKFDFKLQSCNAVSLSWERATGR---VFPVHSYRIQRRGINLFGNTQAIENGGTTANGHGVYYSAAIGSNSDWKTIYVGNDLEFVDSSLETGHNYMYRIQAWNSVGKSGWEIIDL 368
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S2KT34_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KT34_9STRA) HSP 1 Score: 174 bits (442), Expect = 4.520e-41 Identity = 102/296 (34.46%), Postives = 149/296 (50.34%), Query Frame = 3
Query: 1623 DKDHDGVIADEEIQYLVEGA-GGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKFVLRRAPLEQR-----------------EATSAVLGAGQ----------------------------WTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHSSAAEIDVV--VATDDCV 2366
D + DGV+ E+ + + GGS D +E+ V ++ LD N D L SD+ +HWK+L ++LTVDEV +WV++AVQLP+ VA+ F + VTGYDFPEL G + +LGI + +FRK+L+RS+ KL G+G P P F+ SC ++L W+K ++SFPVH + ++R + QR +A + G G+ W TV G D F DS ++ Y Y LQAWN +GHS A D+ + DC+
Sbjct: 127 DTNRDGVVKPNEMANFIRNSIGGSAFDTETEVNFEVERIMGELDQNQDENLDLSDVFSHWKQLESVLTVDEVKDWVLYAVQLPEKVANTFVEHSVTGYDFPELIENDGDAMRVELGIEKQSFRKKLLRSIHAKLLGIGSVPTTPPSFKHNLESCSVVNLTWKK---PAAISFPVHSYRVQRRAVSQRRPTRNNLDFCEEKRNEIDAVQDIFGEGKCNTYLSDKEAHEQNDKFISKEYSASSADWVTVYIGVDTSFLDSNLEHDHKYVYRLQAWNPIGHSPWATRDIYSSLKRSDCL 419
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: B8C5W8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5W8_THAPS) HSP 1 Score: 173 bits (438), Expect = 7.580e-40 Identity = 96/265 (36.23%), Postives = 144/265 (54.34%), Query Frame = 3
Query: 1602 DDIFDRADKDHDGVIADEEI-QYLVEGAGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKFVLRRAPLEQRE-----------------ATSAVLGAGQWTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHSSAAEIDV 2342
D F D DHDG++ EE+ +L + GGS+ D S + V++V+K LD N D + SD+L +W +L +LLT +EV+EWVV+AVQLP+ V F N +TGYDFPE+ G++L +LGI + +FR ++VR M+ ++ G+G P P F +C A+S WE++ FPVH + ++R + E T + W TV G + F DS V+ G Y Y +QAWN++G S +D+
Sbjct: 81 DTFFHSLDSDHDGILEPEEVASFLKDQIGGSQFDTQSAVDKEVSTVMKRLDQNHDG-IEMSDVLDYWMQLESLLTAEEVSEWVVYAVQLPKTVGKIFLENGITGYDFPEIVENGGEVLLNELGIDKTSFRNKIVRQMQARMLGIGSIPDKPTQFYYKLDNCKAVSFTWERSSAR---VFPVHSYRIQRRAINLFENGSTNENNMPIANDFSMVTYPPVSTSDWKTVYVGGENEFVDSSVETGHNYIYRIQAWNSVGRSGWEVVDL 341
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S1B4T7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4T7_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.090e-39 Identity = 98/264 (37.12%), Postives = 138/264 (52.27%), Query Frame = 3
Query: 1611 FDRADKDHDGVIADEEIQYLV-EGAGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKFVLRR--------------------------APLEQREATSAVLGAGQWTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHS 2321
F D DHD I EE+ V + GG++ D EI + V ++ K+LDLN D +S D+ HW +L LLT DEVAEWV +AVQLP++VA+ FR N VTG+DF EL G+ LE+ LGI + FRK+L+R +K ++ G+G P + + + SC ++S W+K G FPVH + ++R P E L W V G+D F D+ ++ G Y Y +QAWNA+G S
Sbjct: 57 FSAVDTDHDDTIDLEELSNFVGKVIGGTQFDTPLEIQSEVNAMFKSLDLNHDKRISFKDVKEHWNKLECLLTADEVAEWVKYAVQLPENVANTFRDNAVTGFDFSELVVNNGEALERYLGIEKELFRKKLLRLIKARMLGVGTVPDSVLNIKHSVDSCSSVSFTWDKPIARG---FPVHSYRIQRRAIMKVPRFIAVDSTGAQNKSVDLDATPNESTVVAQIKLSDENWADVFIGADTEFVDTGLELGYSYIYRIQAWNAVGRS 317
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S4R769_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R769_9STRA) HSP 1 Score: 163 bits (413), Expect = 9.990e-39 Identity = 94/273 (34.43%), Postives = 144/273 (52.75%), Query Frame = 3
Query: 1590 EAVVDDIFDRADKDHDGVIADEEI-QYLVEGAGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKFVLRRAPL---EQREATSAVLGA------------------GQWTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHSSAAEIDV 2342
EA F D D DG++ +E+ +L E GGS D +E+ AGV V++ LD N D L +SD+ W +L +LL DEVA+WV++AVQLP+ + + FR N VTGYDFPEL G+ ++ +L I + +FR++L+ +K L G+G P P + S +S W+K+ E SFPVH + ++R + + + T V+ + +W TV G + F DS ++ G Y Y QAWN++G S + +
Sbjct: 110 EASAFSFFRSVDHDGDGMLEPQELGNFLSESIGGSAFDTQAEVEAGVNKVMEKLDRNHDSGLDKSDVDAFWVQLESLLNADEVADWVIYAVQLPEYLGNIFRENSVTGYDFPELIENGGEAMQTELRIEQSSFRRKLIWHIKACLLGVGSTPTVPTKIKHKLESFSTVSFSWDKSTAE---SFPVHSYRIQRRAVGLHDDGDGTRKVVNSHHTADPPSTVQPLSSPPTSEWVTVYVGGECEFVDSGLELGHNYVYRAQAWNSIGRSDWVTVKI 379
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S4R8Z4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R8Z4_9STRA) HSP 1 Score: 164 bits (414), Expect = 7.280e-38 Identity = 95/280 (33.93%), Postives = 144/280 (51.43%), Query Frame = 3
Query: 1590 EAVVDDIFDRADKDHDGVIADEEI-QYLVEGAGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKFVLRRAPL---EQREATSAVLG-------------------------AGQWTTVMQGSDRGFFDSRVKPGAGYRYSLQAWNALGHSSAAEIDV 2342
EA F D D DG++ +E+ +L E GGS D +E+ AGV V++ LD N D L +SD+ W +L +LL DEVA+WV++AVQLP+ + + FR N VTGYDFPEL G+ ++ +L I + +FR++L+ +K +L G+G P P + S +S W+K+ E SFPVH + ++R + + T V+ +W TV G + F DS ++ G Y Y QAWN++G S +D+
Sbjct: 110 EASAFSFFRSVDHDGDGMLEPQELGNFLSESIGGSAFDTQAEVEAGVNKVMEKLDRNHDSGLDKSDVDAFWVQLESLLNADEVADWVIYAVQLPEYLGNIFRENSVTGYDFPELIENGGEAMKTELRIEQSSFRRKLIWHIKARLLGVGSTPTVPSKMKYKLESSSTVSFSWDKSSAE---SFPVHIYRIQRRDVGLHHDGDGTRKVVNHLAARPRTHQTADPPSTVQRLSSPSTSEWVTVYVGGECEFVDSGLELGHNYVYRAQAWNSIGRSDWVTVDI 386
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S3V9U2_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9U2_9STRA) HSP 1 Score: 160 bits (406), Expect = 3.750e-36 Identity = 89/203 (43.84%), Postives = 121/203 (59.61%), Query Frame = 3
Query: 1563 HAAGGAQLPEAVVDDIFDRADKDHDGVIADEE-IQYLVEGAGGSRLDD-ASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNTSCGALSLEWEKNEGEGSLSFPVHKF-VLRR 2162
H G A F+ D+D DG I E I +++E GGS DD +E+ V ++KNLDLN D L D+ ++W++L +LLTVDEVA+WVVHAVQLP + D R VTGYDFPEL GK L +L IT +FR +++R M+ ++ G+G P P G AT SC A+ L W++ +G FPVHK+ V+RR
Sbjct: 205 HTIGDEHRSSASSTSFFNFVDRDGDGKIRRPELIDFVMENIGGSDFDDEVNEVKPEVDRMMKNLDLNNDDGLDTGDVTSYWEKLESLLTVDEVADWVVHAVQLPSYIGDIVRDKHVTGYDFPELVEDNGKALVDELHITEKSFRTKIIRLMQARMLGIGSVPRKPSGIVATVESCEAIKLTWDRTLADG---FPVHKYRVMRR 404
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Match: A0A7S2CAD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAD4_9STRA) HSP 1 Score: 139 bits (351), Expect = 2.090e-33 Identity = 79/207 (38.16%), Postives = 117/207 (56.52%), Query Frame = 3
Query: 1572 GGAQLPEAVVDDIFDRADKDHDGVIADEEIQYLVEG----AGGSRLDDASEIAAGVASVIKNLDLNADHTLSRSDLLTHWKRLGTLLTVDEVAEWVVHAVQLPQDVADNFRSNMVTGYDFPELAAKQGKLLEQDLGITRPAFRKRLVRSMKWKLWGMGEEPAAPDGFRATNT--SCGALSLEWEKNEGEGSLSFPVHKFVLRRAPLE 2174
G + A D+ F D D DG + + EI+ V G ++++D I + V ++ +D N D LS ++ T+ KR+G +LTV VAEWV+H +QLP++V + FRSN VTGYDF EL G L D+GITR RK+++R+MK + G+G P P F T SC + L+W +++G G F VHK+ + R +E
Sbjct: 25 GDGRSSVASTDEFFTTMDTDADGQVEEFEIREAVAAFGSDGGATKVED---IESTVEDIMSRMDSNTDGLLSDEEIETYSKRIGAVLTVSAVAEWVIHGLQLPEEVGELFRSNSVTGYDFAELVEDDGAALGHDIGITRVVHRKKVLRAMKMLMTGVGNVPTTPSPFIPTIVPGSCETMELQWGRSQGRG---FNVHKYRVFRRTVE 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3466.9243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3466.9243.1 >prot_H-paniculata_contig3466.9243.1 ID=prot_H-paniculata_contig3466.9243.1|Name=mRNA_H-paniculata_contig3466.9243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1034bp MAPFSSADWFFSSPTCTTRIQYWLYFTALFFVLHTYATQVNETLRQQAWRback to top mRNA from alignment at H-paniculata_contig3466:472..9942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3466.9243.1 ID=mRNA_H-paniculata_contig3466.9243.1|Name=mRNA_H-paniculata_contig3466.9243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9471bp|location=Sequence derived from alignment at H-paniculata_contig3466:472..9942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3466:472..9942+ >mRNA_H-paniculata_contig3466.9243.1 ID=mRNA_H-paniculata_contig3466.9243.1|Name=mRNA_H-paniculata_contig3466.9243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6204bp|location=Sequence derived from alignment at H-paniculata_contig3466:472..9942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |