|
|
Homology
BLAST of mRNA_H-paniculata_contig3460.9236.1 vs. uniprot
Match: A0A6H5JW67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW67_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 9.690e-15 Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 3
Query: 207 GFLCWLRTQEPTGLEAEGFFQDVVPKVDAVDFEDSDSGDEGDGDYDLIEDPDSGEKYKVAKDEAIQFYNAGATPRLARA 443
G L W R++ P GLE E FF DVVPKVD VDF DS G+E G+YDL+ED + E YKVAKD+A++FY +G+ PRL RA
Sbjct: 33 GILLWGRSELPNGLEGEQFFPDVVPKVDPVDFHDS--GEEESGNYDLVEDLVTEETYKVAKDQALEFYASGSGPRLERA 109
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 62.0 |
| Seed ortholog evalue | 7.7e-07 |
| Seed eggNOG ortholog | 2880.D7FIW7 |
| KEGG ko | ko:K03125 |
| KEGG Pathway | ko03022,map03022 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | negative regulation of protein autoubiquitination |
| EggNOG OGs | COG5179@1,KOG0008@2759 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01001,ko03021,ko03036 |
| Exons | 5 |
| Model size | 1346 |
| Cds size | 1269 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3460.9236.1 >prot_H-paniculata_contig3460.9236.1 ID=prot_H-paniculata_contig3460.9236.1|Name=mRNA_H-paniculata_contig3460.9236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=423bp
MASISGPVAMDVDGSRNDGVVAVSTEMAAASNTAAKSGTRAWGGFLCWLR TQEPTGLEAEGFFQDVVPKVDAVDFEDSDSGDEGDGDYDLIEDPDSGEKY KVAKDEAIQFYNAGATPRLARAIERAERSERAKIAAELRALNGDTSQPSE DRSVSSEEESEDDTDPLGDSDGDESGSNDGDGGSVSGGGSGQRAKRKGRM GSNGSVVVEEGNNQDEEEEIYWSEAPSGVFASSSSSSEEEDDSDRKFSSD FGGSEDGDGAGEQGRRRRRSLVEPIVVSTEPAAQEGALVCSQSEGQDARH SVEGDEADDDDVMDVVGQAAAAADSSPVSIEAAAEGNADGGNGTDGKPDT KGPRNSREEGDGYGGENGQPPAVTNSDLDGSGDEDIIVVAPVGTEARAAG GLFNDDREARDAATNAVVQDDED back to topmRNA from alignment at H-paniculata_contig3460:10133..15618+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3460.9236.1 ID=mRNA_H-paniculata_contig3460.9236.1|Name=mRNA_H-paniculata_contig3460.9236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5486bp|location=Sequence derived from alignment at H-paniculata_contig3460:10133..15618+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATTTCGAATAAAGTCTAGTCACACAATGATACCGTCGAGAGTATCCTCGC
AACGCGGAGGCCACAGTTGTGCCTGGCATGGCGAGTATCAGCGGGCCAGT
TGCCATGGATGTTGATGGAAGCCGCAACGATGGCGTCGTAGCTGTAAGCA
CGGTGAGTATGGTTCAAACATGCGATGGTTGTACTCTGAGTTCGTTTGCC
CGTGACTTCAGTGAGTTAGTTTGGGTGCAACTTCAGTTCCTGCGGTATTT
GCGAAAGGGTTGCTAAGAAATAATTACGCCAAGCCCGACCCACTGTTGCT
GCGAAACTGTCGGAGGGCAAACGTATGCTGCCCTCCCTAGATCGTGCCTA
GTTCAAGCATTGGTGTGAATTATGTCGACCCAATCGCAGTGGAACACCAA
CAATAGACATTGACAAACTCTCCAATGAGTTAGCATCTCTCCGCCGTTGC
AGGCAGTAGGGTTCACCTACTGTAGCATTCAGACACACAGTTGAACAGCT
CATAGAATAGTAATTTAAGTCACACCAGAGCCCCCGCGAAGCCCGTGTAG
TCCGCATTTGTCCTCGACCCATGAAGAATGCCTTATGTTCGCAGAAAGTG
AAGCCACAATGTCGATAAAGATTCATCTTGTGAGGAATTACTCCTGTGCA
AACTGGAAAAACTATTCCGAAATGACCACGACGACTCCCTGTAGTAACTT
CCAGATATCCCATGTCGTTGGACTGGCATGGCAGAGCTTTCACCGCGTTG
AATACCGAGATTTGGCAGATGGTAGTACTGTTAAGCTATTTACTTGAGAA
GGGTGGTCTGCAGCTGTTTCTGAGATTACCTTTTAGCAGTATGAGAGCAT
TGAACACAGTACTGCTACGTGTGCCAACTTATTCCCTTGCAGACCAGGAA
GGCTCCATTTCGACAAATTTCGACGTGCCGTTTTTGACAGTCTCGCTTCT
CAAAGGGGAATTTAGCCTGAACTTTAGCGTAGGGGGGAATACCGAATTTC
GACGAACATAATCGCTTTGACCAGGTTGAGATCAGACCCGCATGTCGAGA
AGCATATGATAAATAGAACACCGGGATTGCGACGTGTTTCGGTTGGTTGT
CTACAACATGAATTTAGAATACCAAATATCGACGCCATTACCGTGGTACA
TTGTATTGTTTTAACTACACCACGCTCAGTTTTGAGTCCCAGACAACAAA
CGATGGCCCATACTCACCCTGCCGGTACGGTGCTCACAAGGAAAAAATAT
ATAATTAGAAACCTCATCGTTATCGTGGAATTAGGTCATGTTCCATATCA
TACTAATGATATGAAGTTCGAATTTTTTGTAAAATGTCATTTATATATTT
TCTGACTTTTTGTAAATGATTAAAAAAAACACGTAGTGTGCTGTTCGACA
TACTCTAACTGGGTGAATTCATCTGGTTACCCAGCCAGCGATAGCGCAAA
CGAAACGGCATGACATTGCCGCCACATAGATACCCTCACACACACACACA
CACACACACACACACACATGCTGGTACCCGACTTCGGCAATCGCTTGGTA
GATAGGGTGTATTTTGGCCGCCTTGTTTGAGCGTGAGTATCTCCACGTCC
AGAGGTTTGTTGCACACTCTGATTGGTGCATATTTATTCCCTGTATTCAG
GGGGTTCTTTTGATATTGGTTCGGCATGTTGGTTCTGGAAATTGGCTCCT
AAGTTTCCTGTCCAGTCGAACCAAGTGTGTTTTGAAGTACCCATAGTGGT
CCGTCGCTCCTTCACGTTATTTTTTGTTTCGGAGCGTGTACCAACAGACA
CAGCAGCAGGCGGTCTGCCTTAGTCTGACAGTCGGGACATGACAAGATGA
CTGATATCTATCGTATGTGGTAATTAGGTGTTGGGCTTCCTGGTAAAAAG
TTGTTTCTCCCTGGCATTTTTTTTCTTTTCCGTGTATAAGGGGGTTATGC
AGAATTCCAACCAACGAACTCCAAGTCTGTCATGGCCAAATACGCTTTTT
TTTAGACAGTTGGATGGTGTCTTCTAAGCCAACACATCTGCCATCCACCG
TACTATGTATTGGTTTTGTTCTCTTTTATGCTCCGTGTGCTACGTCAAGC
TCTACAGTAGATCTAAGTTCTTGTACAGGCAGAGGAGTCGGCAGCGGCTG
ACACTCCACATCCAAATCTAACTCTCTGTTCACCGTCTGCTGTCGCGAGC
CCAGGGACGGGGGCGTACCTTTTCTTTTCTTCTCTCTGCAGTCCAACGAT
CATACCCGCCCGTCTCGTCCATGTTGATGTATTTTTTGGGCATATTTGAC
AGGAGATGGCTGCAGCATCGAACACCGCGGCGAAATCGGGGACAAGGGCA
TGGGGAGGCTTCCTTTGCTGGTTAAGAACACAAGAGCCGACCGGGCTAGA
GGCGGAGGGTTTTTTCCAAGATGTCGTACCTAAGTGAGCATTGCTCGTAT
GATACCATTGACTTCCACAACGCTGCGGGCAACGCAAAACTTTAGCTGCA
GAAGCACGACTTTTCGCGTCAAGATGGCTTTTTTCGGTTTTCTTTCTCCC
CCGCCCGTGTGGTAAATTGGAATTCATTTTAATTGGAGCGTTTTTCAGGA
CGATCTGAGTTTAACGGAGAGTCGAAAGCACCGAGTTCAAGTGTTTTCTC
TGAGGGGGGTTACTGTCTGTCCTTTTTCCCTACAAAAAGCGCAAATTTTA
TATGCGCTCGTTTCGCTATCAGCTGGGCGAAGAGGATTTATAAAGCAATG
CAAAGACCCAAACTAGCAACAACAATACGGTGCTTTGTTTGTAGTCAAAC
TCTCAAGCCTCCCCTTCGGTGCTCCCGTCTATCACTCCAGGGTTGACGCG
GTGGATTTCGAAGATTCAGATTCGGGGGACGAGGGAGACGGCGATTATGA
CCTGATTGAAGATCCGGACTCAGGAGAAAAGTACAAGTGAGTCTAGTTCT
GTGTGATCAAAGTCCATGGAGAGAAACAAGCATCCATAACTGAGTTTTTG
TGTCGTCCTGGGCAAGCTGCAAGAAAAGATTGTGCTCGTGCTTGTGTAAA
ATACGCACGAACCGTGCGAACCGCAGCACAAAGGACGCCTCGAGAAGATT
TGCAAATAGATATGTATGTGTGTCTCCTCTTGTTGGTTCTTTATTTTTGC
AGGGTCGCCAAAGACGAAGCGATACAGTTTTACAACGCAGGAGCGACACC
TCGGCTCGCTCGCGCGATCGAGCGCGCAGAGCGCTCGGAACGCGCTAAAA
TCGCGGCCGAGTTGAGAGCCCTCAACGGCGACACAAGCCAGCCGTCGGAA
GACCGATCGGTCTCGTCGGAGGAAGAGTCCGAGGACGATACCGACCCGCT
AGGCGACAGCGATGGCGACGAATCTGGCTCGAACGACGGTGATGGCGGAT
CAGTCAGCGGCGGTGGCTCTGGGCAACGAGCCAAGAGGAAGGGAAGAATG
GGAAGCAACGGGAGCGTGGTCGTGGAGGAGGGGAATAATCAGGACGAAGA
GGAGGAGATCTATTGGTCGGAGGCGCCGTCCGGCGTCTTCGCGTCGTCGT
CTTCGTCCTCGGAGGAGGAGGACGACTCTGATCGAAAATTCAGCAGTGAC
TTCGGAGGCTCCGAGGATGGCGATGGTGCGGGAGAGCAGGGACGCCGCCG
CCGCCGCTCATTGGTCGAGCCTATTGTCGTTTCGACAGAGCCTGCTGCGC
AAGAAGGTGCCCTGGTTTGCTCCCAGTCAGAGGGGCAAGATGCTCGGCAC
AGCGTGGAAGGTGATGAGGCAGACGACGACGACGTAATGGATGTTGTTGG
CCAAGCGGCTGCTGCTGCCGATTCGTCTCCGGTATCCATAGAAGCAGCAG
CAGAAGGGAACGCTGATGGCGGCAATGGAACAGACGGAAAGCCGGATACG
AAGGGACCAAGGAACAGCAGGGAGGAAGGAGACGGCTATGGAGGAGAAAA
TGGGCAACCCCCCGCCGTCACCAACAGTGATCTCGACGGAAGCGGGGATG
AAGACATAATCGTTGTCGCTCCTGTTGGCACCGAGGCGCGGGCGGCGGGA
GGTTTGTTCAATGACGACAGAGAGGCGCGCGATGCAGGTAACCAGGGGTA
AGGAAGGGCTTTCACTTCAAGAGGGATGGAATGGCGTGGGGACGTGGTGA
ATCAAGCGTGTGGTCTGCGAGTTTTGTGCAAGAAAAAAGGTGTTGCATAC
TGGAAGGTCCTATTATACATGGCACGTTTGCTCTTTAGTTTATGTATGAT
ACAGTCATGCGGGTGTTGACAATTTGGCATTTTTTTTATCAACGTATACG
ACTGTTTGATGTTGCAGCCCTTCCAAGATGAAAGCGATCTCGTTGTCCTT
GTTGTCCGTTCCCGTTTGGACGTTTAAAAATGTTCGATGGTTAAAAAATT
TGGTGCACCTTGCTCCCGGTCGACTCCCCGCGACAAGATGGAGGCGGGTG
GTAGCCGCAGGATATTGTGTTTTGCAACACAAACCACCGACCGCATTAAG
CTATCAACCGCAGTAGTCATACTATCGTCTGTACTGTACTATGTATAATG
GTACTGGTACTTGCTAGCGGAACTGTGCTGGCTTGCATCTCCCCTGCGTT
CCCCTGGGCTTTTTAAGGATTAGGCGGGAATTTCTCGCTCGGGTAGTGCT
CGTTGTCCTGTCTCCATCGTTGGAGTTATCGTGTTGGGCATTTCTTGTGT
TTGGCAAAGGTACTTAATACTTCTAGCGCAAGGGCAACCGCTTAAAGTCC
TTCACTAACTCTAGACCAATAGTAAACAGCAGCAGCAACATCACCAGTTA
CAGCAGGAGTAGGACTTGAACTAATATAGTCTGTCAGACTACATTTGTTT
CTTCCCTGATATATGTGATTGAACCAGAATTCACTTTTACCCTGAGAGAC
TTCTGCCACGCATTTCCGTGTCGTTGCTTTCCCCTCTCCCGTTGGTTTCT
CGGTCAAGAATGGCGTTTTGGGGTATTCCCTTTAGCTATTACTGTCTCTT
AGATGTGGCTGTATTTCGTGTACCTTGCACTGTATTTCGCTACAATGTGG
CACGGTTGTACTCGAAATATCTCGATTGTTACAGGCGTCCTATGACCCAG
GTCACGTCTGAACGATCTAAGTGATGTGCTGGTACATGATAAGAGCGGGC
TGTATGTGAATATCTGTCTTCCTGGGGGAGTACAGTAGTCGTATGTATCG
TTCGAATTCAACATCTCCCAATACTTCAGTCCAATCACTCAAGAAACGCG
GTCGGTGGACGTGTAAATTTCTCACAGCCCAAATATTATGGTTCTGTACG
TCCATACACGGTGGATTATGACCCCAACACCCGAAAATATGGCATGTGGC
CCAGTCATGTCCAGGTCAAGCGAGTTTATTTTCGGATCGGACCGCTCTTT
TTGCGCGTGCTCTCTTTGCGTTCTTACTGCCCCCGGGTTGGTTTGGTTGG
ATAGCGACGAATGCGGTGGTACAAGACGACGAGGAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3460:10133..15618+ >mRNA_H-paniculata_contig3460.9236.1 ID=mRNA_H-paniculata_contig3460.9236.1|Name=mRNA_H-paniculata_contig3460.9236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig3460:10133..15618+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCGAGTATCAGCGGGCCAGTTGCCATGGATGTTGATGGAAGCCGCAA CGATGGCGTCGTAGCTGTAAGCACGATGGCGAGTATCAGCGGGCCAGTTG CCATGGATGTTGATGGAAGCCGCAACGATGGCGTCGTAGCTGTAAGCACG GAGATGGCTGCAGCATCGAACACCGCGGCGAAATCGGGGACAAGGGCATG GGGAGGCTTCCTTTGCTGGTTAAGAACACAAGAGCCGACCGGGCTAGAGG CGGAGGGTTTTTTCCAAGATGTCGTACCTAAGAGATGGCTGCAGCATCGA ACACCGCGGCGAAATCGGGGACAAGGGCATGGGGAGGCTTCCTTTGCTGG TTAAGAACACAAGAGCCGACCGGGCTAGAGGCGGAGGGTTTTTTCCAAGA TGTCGTACCTAAGGTTGACGCGGTGGATTTCGAAGATTCAGATTCGGGGG ACGAGGGAGACGGCGATTATGACCTGATTGAAGATCCGGACTCAGGAGAA AAGTACAAGGTTGACGCGGTGGATTTCGAAGATTCAGATTCGGGGGACGA GGGAGACGGCGATTATGACCTGATTGAAGATCCGGACTCAGGAGAAAAGT ACAAGGTCGCCAAAGACGAAGCGATACAGTTTTACAACGCAGGAGCGACA CCTCGGCTCGCTCGCGCGATCGAGCGCGCAGAGCGCTCGGAACGCGCTAA AATCGCGGCCGAGTTGAGAGCCCTCAACGGCGACACAAGCCAGCCGTCGG AAGACCGATCGGTCTCGTCGGAGGAAGAGTCCGAGGACGATACCGACCCG CTAGGCGACAGCGATGGCGACGAATCTGGCTCGAACGACGGTGATGGCGG ATCAGTCAGCGGCGGTGGCTCTGGGCAACGAGCCAAGAGGAAGGGAAGAA TGGGAAGCAACGGGAGCGTGGTCGTGGAGGAGGGGAATAATCAGGACGAA GAGGAGGAGATCTATTGGTCGGAGGCGCCGTCCGGCGTCTTCGCGTCGTC GTCTTCGTCCTCGGAGGAGGAGGACGACTCTGATCGAAAATTCAGCAGTG ACTTCGGAGGCTCCGAGGATGGCGATGGTGCGGGAGAGCAGGGACGCCGC CGCCGCCGCTCATTGGTCGAGCCTATTGTCGTTTCGACAGAGCCTGCTGC GCAAGAAGGTGCCCTGGTTTGCTCCCAGTCAGAGGGGCAAGATGCTCGGC ACAGCGTGGAAGGTGATGAGGCAGACGACGACGACGTAATGGATGTTGTT GGCCAAGCGGCTGCTGCTGCCGATTCGTCTCCGGTATCCATAGAAGCAGC AGCAGAAGGGAACGCTGATGGCGGCAATGGAACAGACGGAAAGCCGGATA CGAAGGGACCAAGGAACAGCAGGGAGGAAGGAGACGGCTATGGAGGAGAA AATGGGCAACCCCCCGCCGTCACCAACAGTGATCTCGACGGAAGCGGGGA TGAAGACATAATCGTTGTCGCTCCTGTTGGCACCGAGGCGCGGGCGGCGG GAGGTTTGTTCAATGACGACAGAGAGGCGCGCGATGCAGGGTCGCCAAAG ACGAAGCGATACAGTTTTACAACGCAGGAGCGACACCTCGGCTCGCTCGC GCGATCGAGCGCGCAGAGCGCTCGGAACGCGCTAAAATCGCGGCCGAGTT GAGAGCCCTCAACGGCGACACAAGCCAGCCGTCGGAAGACCGATCGGTCT CGTCGGAGGAAGAGTCCGAGGACGATACCGACCCGCTAGGCGACAGCGAT GGCGACGAATCTGGCTCGAACGACGGTGATGGCGGATCAGTCAGCGGCGG TGGCTCTGGGCAACGAGCCAAGAGGAAGGGAAGAATGGGAAGCAACGGGA GCGTGGTCGTGGAGGAGGGGAATAATCAGGACGAAGAGGAGGAGATCTAT TGGTCGGAGGCGCCGTCCGGCGTCTTCGCGTCGTCGTCTTCGTCCTCGGA GGAGGAGGACGACTCTGATCGAAAATTCAGCAGTGACTTCGGAGGCTCCG AGGATGGCGATGGTGCGGGAGAGCAGGGACGCCGCCGCCGCCGCTCATTG GTCGAGCCTATTGTCGTTTCGACAGAGCCTGCTGCGCAAGAAGGTGCCCT GGTTTGCTCCCAGTCAGAGGGGCAAGATGCTCGGCACAGCGTGGAAGGTG ATGAGGCAGACGACGACGACGTAATGGATGTTGTTGGCCAAGCGGCTGCT GCTGCCGATTCGTCTCCGGTATCCATAGAAGCAGCAGCAGAAGGGAACGC TGATGGCGGCAATGGAACAGACGGAAAGCCGGATACGAAGGGACCAAGGA ACAGCAGGGAGGAAGGAGACGGCTATGGAGGAGAAAATGGGCAACCCCCC GCCGTCACCAACAGTGATCTCGACGGAAGCGGGGATGAAGACATAATCGT TGTCGCTCCTGTTGGCACCGAGGCGCGGGCGGCGGGAGGTTTGTTCAATG ACGACAGAGAGGCGCGCGATGCAGCGACGAATGCGGTGGTACAAGACGAC GAGGACCGACGAATGCGGTGGTACAAGACGACGAGGAC back to top
|