mRNA_H-paniculata_contig34580.9231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34580.9231.1
Unique NamemRNA_H-paniculata_contig34580.9231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34580.9231.1 vs. uniprot
Match: D7FH57_ECTSI (Putative transcription antitermination protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH57_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.910e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 GIYVVKVNTFGRNSEVKVPWEEARKLTDLEQENWFEETRRV 123
            G YVVKVNTFGRNS+V++ W+  RKLT+LE E WFEETRR 
Sbjct:  371 GEYVVKVNTFGRNSDVRLDWDGVRKLTELEVETWFEETRRA 411
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BLAST of mRNA_H-paniculata_contig34580.9231.1 vs. uniprot
Match: A0A6H5J6X8_9PHAE (NGN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.320e-11
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 GIYVVKVNTFGRNSEVKVPWEEARKLTDLEQENWFEETRRV 123
            G YVVKVNTFGRNS+V++ W   RKLT+LE E WFEETRR 
Sbjct:  348 GEYVVKVNTFGRNSDVRLDWNGVRKLTELEVETWFEETRRA 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34580.9231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH57_ECTSI3.910e-1170.73Putative transcription antitermination protein n=1... [more]
A0A6H5J6X8_9PHAE7.320e-1170.73NGN domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34580contigH-paniculata_contig34580:434..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionputative transcription antitermination protein
Ec32 orthologEc-13_000840.1
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.3949006-CDS-H-paniculata_contig34580:433..5651622930067.3949006-CDS-H-paniculata_contig34580:433..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34580 434..565 +
1691481133.4050465-CDS-H-paniculata_contig34580:433..5651691481133.4050465-CDS-H-paniculata_contig34580:433..565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34580 434..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34580.9231.1prot_H-paniculata_contig34580.9231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34580 434..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34580.9231.1

>prot_H-paniculata_contig34580.9231.1 ID=prot_H-paniculata_contig34580.9231.1|Name=mRNA_H-paniculata_contig34580.9231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
GIYVVKVNTFGRNSEVKVPWEEARKLTDLEQENWFEETRRVSM*
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mRNA from alignment at H-paniculata_contig34580:434..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34580.9231.1 ID=mRNA_H-paniculata_contig34580.9231.1|Name=mRNA_H-paniculata_contig34580.9231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig34580:434..565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATATACGTGGTGAAGGTGAACACCTTTGGGCGGAACTCGGAAGTGAA
GGTACCTTGGGAAGAGGCGCGTAAGCTGACCGACCTAGAGCAGGAGAACT
GGTTTGAAGAAACACGCAGGGTGAGTATGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34580:434..565+

>mRNA_H-paniculata_contig34580.9231.1 ID=mRNA_H-paniculata_contig34580.9231.1|Name=mRNA_H-paniculata_contig34580.9231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig34580:434..565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATATACGTGGTGAAGGTGAACACCTTTGGGCGGAACTCGGAAGTGAA
GGTACCTTGGGAAGAGGCGCGTAAGCTGACCGACCTAGAGCAGGAGAACT
GGTTTGAAGAAACACGCAGGGTGAGTATGTAGGGGATATACGTGGTGAAG
GTGAACACCTTTGGGCGGAACTCGGAAGTGAAGGTACCTTGGGAAGAGGC
GCGTAAGCTGACCGACCTAGAGCAGGAGAACTGGTTTGAAGAAACACGCA
GGGTGAGTATGTAG
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