mRNA_H-paniculata_contig3458.9228.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3458.9228.1
Unique NamemRNA_H-paniculata_contig3458.9228.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A1D1YKZ1_9ARAE (Histone H4 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YKZ1_9ARAE)

HSP 1 Score: 202 bits (513), Expect = 5.720e-65
Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:   19 ITSLLV*LYKH*QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            +  L+  +Y+   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 LPLLIFSVYEGAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A6S7NPF6_LACSI (Histone H4 n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NPF6_LACSI)

HSP 1 Score: 202 bits (514), Expect = 8.520e-65
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   19 ITSLLV*LYKH*QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            +  LL+ L  + +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 LQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 154
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 200 bits (509), Expect = 9.440e-65
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   58 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 200 bits (508), Expect = 1.340e-64
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   58 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A2J6KUW8_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6KUW8_LACSA)

HSP 1 Score: 202 bits (514), Expect = 1.390e-64
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   19 ITSLLV*LYKH*QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            +  LL+ L  + +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   54 LQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 169
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: UPI000528D6F7 (histone H4-like isoform X2 n=2 Tax=Euteleostomi TaxID=117571 RepID=UPI000528D6F7)

HSP 1 Score: 200 bits (508), Expect = 1.680e-64
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:   46 KH*QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            +H  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 QHSSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A5D2RII0_GOSTO (Histone H4 n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2RII0_GOSTO)

HSP 1 Score: 200 bits (509), Expect = 1.850e-64
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   40 LYKH*QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            L+   +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 LFDSSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 124
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BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.910e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   58 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A2J6LJW1_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LJW1_LACSA)

HSP 1 Score: 201 bits (510), Expect = 2.420e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:   55 QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   40 QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 143
[Close]
BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Match: A0A8J4W3W0_9ROSI (Histone H4 n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4W3W0_9ROSI)

HSP 1 Score: 201 bits (510), Expect = 2.580e-64
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:   43 YKH*QMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            +K  +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   38 FKSWKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3458.9228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D1YKZ1_9ARAE5.720e-6588.79Histone H4 (Fragment) n=1 Tax=Anthurium amnicola T... [more]
A0A6S7NPF6_LACSI8.520e-6589.66Histone H4 n=1 Tax=Lactuca saligna TaxID=75948 Rep... [more]
A0A024G0M5_9STRA9.440e-65100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
H4_SOLLC1.340e-6499.03Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A2J6KUW8_LACSA1.390e-6489.66Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
UPI000528D6F71.680e-6495.33histone H4-like isoform X2 n=2 Tax=Euteleostomi Ta... [more]
A0A5D2RII0_GOSTO1.850e-6493.58Histone H4 n=1 Tax=Gossypium tomentosum TaxID=3427... [more]
A0A3L6V663_9STRA1.910e-64100.00Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A2J6LJW1_LACSA2.420e-6498.08Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
A0A8J4W3W0_9ROSI2.580e-6494.44Histone H4 n=1 Tax=Castanea mollissima TaxID=60419... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3458contigH-paniculata_contig3458:4044..4412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size369
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.1860569-UTR-H-paniculata_contig3458:4043..41001622930067.1860569-UTR-H-paniculata_contig3458:4043..4100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3458 4044..4100 +
1691481133.3089392-UTR-H-paniculata_contig3458:4043..41001691481133.3089392-UTR-H-paniculata_contig3458:4043..4100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3458 4044..4100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.2068226-CDS-H-paniculata_contig3458:4100..44121622930067.2068226-CDS-H-paniculata_contig3458:4100..4412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3458 4101..4412 +
1691481133.3219967-CDS-H-paniculata_contig3458:4100..44121691481133.3219967-CDS-H-paniculata_contig3458:4100..4412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3458 4101..4412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3458.9228.1prot_H-paniculata_contig3458.9228.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3458 4101..4412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3458.9228.1

>prot_H-paniculata_contig3458.9228.1 ID=prot_H-paniculata_contig3458.9228.1|Name=mRNA_H-paniculata_contig3458.9228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at H-paniculata_contig3458:4044..4412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3458.9228.1 ID=mRNA_H-paniculata_contig3458.9228.1|Name=mRNA_H-paniculata_contig3458.9228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig3458:4044..4412+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGATTCATAACAGCTAAATCACTTCTCTTCTAGTTTGATTGTACAAGCA
TTGACAAATGTCTGGACGCGGAAAGGGTGGTAAGGGTCTGGGAAAGGGCG
GTGCCAAGCGCCATCGCAAGGTTCTTCGCGACAATATCCAGGGCATCACA
AAGCCCGCGATCCGTCGCCTGGCTCGCCGTGGTGGTGTGAAGCGTATCTC
CGGTCTGATTTACGAGGAGACCCGTGGTGTACTCAAGGTATTCCTGGAGA
ACGTCATCCGCGACTCGGTCACTTACACCGAGCACGCCCGCCGGAAGACT
GTGACTGCTATGGACGTGGTCTACGCTCTCAAGCGCCAAGGCCGCACCCT
GTATGGTTTCGGTGGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3458:4044..4412+

>mRNA_H-paniculata_contig3458.9228.1 ID=mRNA_H-paniculata_contig3458.9228.1|Name=mRNA_H-paniculata_contig3458.9228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig3458:4044..4412+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACGCGGAAAGGGTGGTAAGGGTCTGGGAAAGGGCGGTGCCAA
GCGCCATCGCAAGGTTCTTCGCGACAATATCCAGGGCATCACAAAGCCCG
CGATCCGTCGCCTGGCTCGCCGTGGTGGTGTGAAGCGTATCTCCGGTCTG
ATTTACGAGGAGACCCGTGGTGTACTCAAGGTATTCCTGGAGAACGTCAT
CCGCGACTCGGTCACTTACACCGAGCACGCCCGCCGGAAGACTGTGACTG
CTATGGACGTGGTCTACGCTCTCAAGCGCCAAGGCCGCACCCTGTATGGT
TTCGGTGGTTAAATGTCTGGACGCGGAAAGGGTGGTAAGGGTCTGGGAAA
GGGCGGTGCCAAGCGCCATCGCAAGGTTCTTCGCGACAATATCCAGGGCA
TCACAAAGCCCGCGATCCGTCGCCTGGCTCGCCGTGGTGGTGTGAAGCGT
ATCTCCGGTCTGATTTACGAGGAGACCCGTGGTGTACTCAAGGTATTCCT
GGAGAACGTCATCCGCGACTCGGTCACTTACACCGAGCACGCCCGCCGGA
AGACTGTGACTGCTATGGACGTGGTCTACGCTCTCAAGCGCCAAGGCCGC
ACCCTGTATGGTTTCGGTGGTTAA
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