mRNA_H-paniculata_contig3456.9225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3456.9225.1
Unique NamemRNA_H-paniculata_contig3456.9225.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: D7G3K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K6_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 1.300e-121
Identity = 191/281 (67.97%), Postives = 225/281 (80.07%), Query Frame = 1 
Query:  190 SEGVADCFRVDMGDNPYEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFPSFERGSLRVRSLTRGSAKELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTVE-ENAAKSLHAANKKSSGG---WWRPW 1020
            S  VA C   D  D+PYEPGQA+G G+K+E+WK  H NLTILET ED+PVLGL+SVVRN ETDG  FLS ANRL+RQLLDFA MG P+D++A F TPA VMM GVLPE+D+ VCAI+LYLE+E  GVF+ ELDAAFPSFERGSL+VR LTRGS++ELPRDM GKQ+LLLAPVV +++PVLAALERL   GV++E+VTLV VVIS  A+E LTEEAEDM ++C+AMDGETRG+D+Q+VPGVGDFSRRYFEAK  VE E AA+         S G   WWR W
Sbjct:   93 STSVAGCSSADGVDDPYEPGQAVGVGIKAEMWKTKHPNLTILETIEDSPVLGLMSVVRNVETDGGAFLSAANRLMRQLLDFADMGFPNDDEAVFATPARVMMAGVLPEDDVNVCAISLYLENEPCGVFDMELDAAFPSFERGSLQVRCLTRGSSRELPRDMQGKQILLLAPVVGYAQPVLAALERLEQAGVEDENVTLVSVVISKDALEALTEEAEDMRVVCSAMDGETRGSDHQVVPGVGDFSRRYFEAKAIVEAEAAARXXXXXXXXXSNGKRRWWRLW 373
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: K3X231_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X231_GLOUD)

HSP 1 Score: 132 bits (331), Expect = 9.100e-31
Identity = 87/267 (32.58%), Postives = 134/267 (50.19%), Query Frame = 1 
Query:  238 YEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFPSFER-GSLRVRSLTRGSAK----ELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTV----EENAAKSLHAANKKSSGGWW 1011
            Y  G+A+G G++ ELWK  H N+ +L+   +   LG+  + R+ E  G  F+  AN +LR  +D A+  LP+DE+A   TP G   +GV+ E+D++V  I++  + E        L+   P   + G + V  + +G  K     LP D+ G +VLLL P +   E +   +  L   GV EE +T+V +V   +A +   +   +  L+ AA D  TR  +  IVPG GDF  RY     TV    EE  ++S  +   K    WW
Sbjct:   33 YASGEALGRGVRLELWKAKHENVVVLDFESELIQLGITKI-RDYENAGAQFVHDANSVLRAAVDLALTELPNDEEAVVTTPRGHKCEGVVFEDDVKVVGISIAKKPEVQKGLQQVLETTLPFESKLGEIIVADVGKGDFKIVKASLPDDLDGHEVLLLCPDLAAIEQISKTIHLLRQQGVDEEKITVVTLVTCPEAADSFCQTFGEARLVTAAFDA-TRDKEGYIVPGFGDFEERYLGGAATVVDLPEEAESESNDSDLSKKLTSWW 297
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A7S1CHZ5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHZ5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.030e-28
Identity = 80/243 (32.92%), Postives = 134/243 (55.14%), Query Frame = 1 
Query:  238 YEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLY---------LEHEEPGVFNFELDAAFPSFERGSLRVRSLTRGSAKELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEA 939
            YEP +A+G GL+ E WK  H N+TILE   + P+  LL+  RNA  D + F    +RLL   L+ A+  LP+ ED    TP G   +G   E+DL + A+T+          L+   PG+       A+ + +  +  V      + K LPRD++   VL+L+P++       A +E+L+  GV+E+++ ++C+ ++ ++ + LT    D++++ A+MD      + ++VPGVGDF +RY EA
Sbjct:   62 YEPCEAVGDGLRGEFWKAKHGNITILELDYE-PLQVLLTRARNAACDSKAFNFFIHRLLSLTLEMALGALPT-EDVVVTTPDGYKFRGKEYEKDLSLLAVTVSQSGTHMVEPLQRLSPGI-----PIAYATNDPSTHTV------TTKGLPRDVSDYHVLVLSPIMRGGLKESAVIEQLTKRGVQEDNIQVICLFMTPQSADLLTSRHPDVAVVAASMDAGIDA-EGRLVPGVGDFEKRYNEA 290
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A3F2RDY9_9STRA (Ubiquitin thioesterase OTU1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RDY9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.060e-27
Identity = 84/244 (34.43%), Postives = 125/244 (51.23%), Query Frame = 1 
Query:  247 GQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFPSFER-GSLRVRSLTRGSAK----ELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTVEENA 963
            G+A+G G++ ELWK  H N+ +L    +   LG+  + R+ E DG  F   AN +LR  LD A+  LP+DE A   TP G   KG+L E+D++VC I++ ++ E     +  L  + P   + G + V+ L +G  K    +LP D+   +VLLL P +     V   +  L   GV+EE +T+V +V    A +   +   D  L+ A+ D    GN   IVPG+G F  RY  A     E A
Sbjct:   38 GEALGRGVRLELWKAKHENVVVLGLESELIQLGMTRI-RDYENDGAKFTHDANGVLRSTLDLALTELPNDE-AVVTTPRGYKAKGLLFEDDVKVCGISIAVKPEVQSGLSHVLRTSLPFDSKYGEILVQGLAKGGMKIAKAQLPDDIDDHEVLLLCPELASISQVDKVIHLLMQQGVEEEKITVVTLVTCPAAADSFCKAFGDARLVTASFDTRLDGN-GHIVPGIGSFEERYLGAASAAVELA 278
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A2D4BG76_PYTIN (Ubiquitin thioesterase OTU1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG76_PYTIN)

HSP 1 Score: 123 bits (309), Expect = 2.910e-26
Identity = 87/290 (30.00%), Postives = 144/290 (49.66%), Query Frame = 1 
Query:  229 DNPYEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFP-SFERGSLRVRSLTRGSAK----ELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYF-------EAKRTV---EENAAKSLHAANKKSSGGWWRPWKRAG*QGRSIG 1053
            D  Y  G+A+G G++ E WK  H N+ +L+   +   LG+  + R+ E  G  F+  AN +LR  LD A+  LP+DE+A   TP G  ++GV+ ++D++VC IT+    +        L    P   + G++ ++   +G A+     LP D+ G +VLLL P     E +   +  L   GV+E  +++V +V   +A ++  +   D  LI A+ D   R  +  I+PGVGDF  RY        +A+ T    E+ +   L +   K S  WW  +     + +S+G
Sbjct:   33 DRVYVSGEALGRGVRLEYWKAKHENVVVLDLESELIQLGMTRI-RDRENGGARFVHDANSVLRATLDLALTELPNDEEAVVTTPRGHKVEGVVFDDDVKVCGITVSSIADVEANLLQVLKNTLPFDSQLGNVIIQESDKGDARIVKASLPDDLDGCEVLLLVPEFNSLEKLNKLILLLRQEGVEESKISIVTLVTCPEAADKFCQTFGDAKLIXASFDA-ARDRNGHIIPGVGDFEARYLGSNDDSSDAETTSSSSEDESPADLDSEPAKKS--WWPSFLGGSKREQSVG 318
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A024UJ43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJ43_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.890e-26
Identity = 90/287 (31.36%), Postives = 131/287 (45.64%), Query Frame = 1 
Query:  178 SWKPSEGVADCFRVDMGDNPYEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFPS---FERGSLRVRSLTRGS--AKELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTVEENAAKSLHAANKKSSGGWWRPWK 1023
            S K     A C ++      YE GQ +G G+K ELWK  H N+ +L+   +T   GL  V R+    G  F+  AN+LLR +L+ A+  LP+DED    TP G  +KG+  E+ + VC I L          N  L    P         L   S T G+     LP  +    V+L+ P     + V  AL+ L   GV E+ + +V +V    A ++      D+SL+ AA D  T  +  +IVPG+G+F +RY      V + +      A       WW P+K
Sbjct:   20 SQKSPGSTARCEKI------YESGQVLGRGVKLELWKAKHKNVDVLDLESETIQTGLTHV-RDYHATGAKFVHVANKLLRNVLESALTQLPNDEDVVVTTPLGHKIKGIDYEDGVNVCGIALVERDLVLEQMNLLLKTTLPFDSVIGHLQLSANSSTPGALATATLPDGIEDMHVILVHPEFASFDVVQPALQLLLKKGVPEDHIQVVTLVTCPAAADKFCATFADVSLVTAAFDA-TSDSQGRIVPGLGNFEKRYAGDAIEVPDVSDDQGDGAGTGGITSWW-PFK 297
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A0W8D6H8_PHYNI (Uracil phosphoribosyltransferase n=19 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D6H8_PHYNI)

HSP 1 Score: 117 bits (294), Expect = 1.440e-25
Identity = 77/272 (28.31%), Postives = 136/272 (50.00%), Query Frame = 1 
Query:  238 YEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFP-SFERGSLRVRSLTRGSAK----ELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHV-------------GVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTVEENAAKSLHAANKKSS 999
            Y  G+A+G G++ ELWK  H N+ +L+   +   LG+  + R+ E  G  F   AN +LR  LD A+  LPSDE++   TP G   +G++ E+D++VC I++ +  E        L  + P   + G + V+   +G  K     LP D+ G +VLLL P +     +   +   S V             GV+E+ +T+V +V   +  +   +  +D  L+ A+ D     ++  IVPG+G F  RY  A  +V +   +++ ++ ++++
Sbjct:   36 YASGEALGRGVRLELWKAQHENVVVLDLESELIQLGMTRI-RDYENAGAKFTHDANGVLRSTLDLALTELPSDEESVVTTPRGYKAEGLMFEDDVKVCGISIAVNPEAQKGLAQVLRTSLPYDAKYGEILVQEDAKGGNKIAKATLPEDLDGHEVLLLLPELASVSQIDKVIHVRSRVCWFVLESANDTGQGVEEDKITVVTLVTCPEGADGFCKAFDDARLVTASFDSRLN-SEGHIVPGIGSFEERYLGAPSSVVDVVDEAVESSKEENA 305
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A484EG38_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG38_BRELC)

HSP 1 Score: 117 bits (293), Expect = 1.810e-25
Identity = 80/256 (31.25%), Postives = 126/256 (49.22%), Query Frame = 1 
Query:  238 YEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFPSFER--GSLRVRSLTRG-----SAKELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAE----------DMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTVE 954
            Y  G+A+G G++ ELWK  H N+ +L+   +   LG+  + R+    G  F   AN +LR  LD A+  LPSD++A   TP G  + GVL E++++VC I++  + E     +  L    P FE   G + V+ +  G     +   LP  +   +V LL P       V   +  L H G +E+ +TLV +V   +AV++  +  +          D  L+ A+ D     ND+ IVPG+G F  RY  A  ++E
Sbjct:   36 YTSGEALGRGVRRELWKAQHENVVVLDLESELIKLGMTRI-RDYANAGAKFTHDANAVLRSTLDLALSELPSDDNAVVTTPRGYKVDGVLLEDNVKVCGISIAAKPEAQICLSRVLRTCLP-FEAKFGEILVQEVANGGNTRIAKTTLPDGLEQHEVFLLMPEFALISQVDKIIHLLKHHGAEEDKLTLVTLVTCPEAVDRFCKVDQSICGMSCAFRDARLVTASFDSRLN-NDSHIVPGIGSFEERYLGAPSSME 288
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A0P1AV45_PLAHL (Armadillo/beta-Catenin/plakoglobin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AV45_PLAHL)

HSP 1 Score: 116 bits (290), Expect = 3.850e-25
Identity = 71/243 (29.22%), Postives = 123/243 (50.62%), Query Frame = 1 
Query:  238 YEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFP-SFERGSLRVRSLTRGSAK----ELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTV 951
            Y  G+A+G G++ ELWK  H N+ +L+   +   LG+  + R+ +  G  F   AN +LR   + A+  LP+D++A   TP G  ++G++ E+D++VC I++ +  +     +  L    P   + G + V+   +G +       P  +   +VLLL P +     V   +  L H G KEE +T+V +V   +A +   +   D  L+ A++D      + Q+VPG+G F  RY  A  +V
Sbjct:   36 YTSGEALGRGVRLELWKAQHENVVVLDLESELIQLGMTRI-RDYKNAGAQFAHDANGVLRSACELALAELPTDDEAVVTTPHGYKIEGLVFEDDVKVCGISIAVNPDAQKGLSQVLQTTLPYDAKYGEILVQDAAKGGSAIVKATFPEGLEDYEVLLLLPELASVSQVDKVIHLLMHHGAKEEKITVVTLVTCSEAADGFCKAFGDARLVTASLDSRLN-KEGQLVPGMGFFEERYLGAPSSV 276
[Close]
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Match: A0A5D6XUW6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUW6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.820e-25
Identity = 83/269 (30.86%), Postives = 124/269 (46.10%), Query Frame = 1 
Query:  238 YEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVRNAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPEEDLEVCAITLYLEHEEPGVFNFELDAAFPSFER-GSLRVRSLTRGSAK----ELPRDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAVEQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTVEENAAKSLHAANKKSSG------GWW 1011
            Y  G+A+G G++ ELWK  H N+ +L+   +   LG+             F+  AN +LR  +D A+  LP+DE+A   TP G   + V+ E+D++V  +++    E        L    P   + G + V    +G  K     LP D+ G  VLLL P     E V  A   L   GV EE +T+V +V   +A ++  +   D  L+ AA D   R  +  IVPG+GDF  RY     TV E   ++  A++  S         WW
Sbjct:   35 YSSGEALGRGVRLELWKAKHENVVVLDLESELIQLGMAR-----------FVHDANSVLRAAVDLALTELPNDEEAVVTTPRGHRCEAVVFEDDVKVVGVSIAKTPEVNKSLQQVLVTTLPFESKVGEILVAETDKGDYKVVTVALPDDLDGCDVLLLVPDFAALEQVTKAFHLLRQQGVDEEKITVVTLVTCPEAADRFCQTFGDARLVTAAFDA-ARDKEGCIVPGIGDFESRYMGQAATVVELPEEAAPASDDDSGDLTKKLTSWW 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3456.9225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3K6_ECTSI1.300e-12167.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K3X231_GLOUD9.100e-3132.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1CHZ5_9STRA7.030e-2832.92Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3F2RDY9_9STRA1.060e-2734.43Ubiquitin thioesterase OTU1 n=3 Tax=Phytophthora k... [more]
A0A2D4BG76_PYTIN2.910e-2630.00Ubiquitin thioesterase OTU1 n=1 Tax=Pythium insidi... [more]
A0A024UJ43_9STRA8.890e-2631.36Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A0W8D6H8_PHYNI1.440e-2528.31Uracil phosphoribosyltransferase n=19 Tax=Phytopht... [more]
A0A484EG38_BRELC1.810e-2531.25Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1AV45_PLAHL3.850e-2529.22Armadillo/beta-Catenin/plakoglobin n=1 Tax=Plasmop... [more]
A0A5D6XUW6_9STRA7.820e-2530.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3456contigH-paniculata_contig3456:3768..14383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue2.7e-100
Seed eggNOG ortholog2880.D7G3K6
KEGG rclassRC00063
KEGG koko:K00761
KEGG ReactionR00966
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.UMP salvage
EggNOG OGsCOG0572@1,KOG4203@2759
Ec32 ortholog descriptionPhosphoribosyltransferase-like
Ec32 orthologEc-19_005020.1
EC2.4.2.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons7
Model size1734
Cds size972
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.7649364-UTR-H-paniculata_contig3456:3767..44661622930066.7649364-UTR-H-paniculata_contig3456:3767..4466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3456 3768..4466 -
1691481133.1320887-UTR-H-paniculata_contig3456:3767..44661691481133.1320887-UTR-H-paniculata_contig3456:3767..4466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3456 3768..4466 -
1622930066.8921723-UTR-H-paniculata_contig3456:14320..143831622930066.8921723-UTR-H-paniculata_contig3456:14320..14383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3456 14321..14383 -
1691481133.2157037-UTR-H-paniculata_contig3456:14320..143831691481133.2157037-UTR-H-paniculata_contig3456:14320..14383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3456 14321..14383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.7819438-CDS-H-paniculata_contig3456:4466..46071622930066.7819438-CDS-H-paniculata_contig3456:4466..4607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 4467..4607 -
1691481133.1446579-CDS-H-paniculata_contig3456:4466..46071691481133.1446579-CDS-H-paniculata_contig3456:4466..4607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 4467..4607 -
1622930066.8016949-CDS-H-paniculata_contig3456:8439..84841622930066.8016949-CDS-H-paniculata_contig3456:8439..8484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 8440..8484 -
1691481133.1543155-CDS-H-paniculata_contig3456:8439..84841691481133.1543155-CDS-H-paniculata_contig3456:8439..8484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 8440..8484 -
1622930066.8149126-CDS-H-paniculata_contig3456:8894..90381622930066.8149126-CDS-H-paniculata_contig3456:8894..9038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 8895..9038 -
1691481133.1676695-CDS-H-paniculata_contig3456:8894..90381691481133.1676695-CDS-H-paniculata_contig3456:8894..9038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 8895..9038 -
1622930066.8260994-CDS-H-paniculata_contig3456:10100..103071622930066.8260994-CDS-H-paniculata_contig3456:10100..10307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 10101..10307 -
1691481133.1770432-CDS-H-paniculata_contig3456:10100..103071691481133.1770432-CDS-H-paniculata_contig3456:10100..10307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 10101..10307 -
1622930066.8417232-CDS-H-paniculata_contig3456:12221..123771622930066.8417232-CDS-H-paniculata_contig3456:12221..12377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 12222..12377 -
1691481133.185681-CDS-H-paniculata_contig3456:12221..123771691481133.185681-CDS-H-paniculata_contig3456:12221..12377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 12222..12377 -
1622930066.85552-CDS-H-paniculata_contig3456:13408..135701622930066.85552-CDS-H-paniculata_contig3456:13408..13570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 13409..13570 -
1691481133.1944313-CDS-H-paniculata_contig3456:13408..135701691481133.1944313-CDS-H-paniculata_contig3456:13408..13570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 13409..13570 -
1622930066.8701131-CDS-H-paniculata_contig3456:14203..143201622930066.8701131-CDS-H-paniculata_contig3456:14203..14320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 14204..14320 -
1691481133.204388-CDS-H-paniculata_contig3456:14203..143201691481133.204388-CDS-H-paniculata_contig3456:14203..14320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3456 14204..14320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3456.9225.1prot_H-paniculata_contig3456.9225.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3456 4467..14320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3456.9225.1

>prot_H-paniculata_contig3456.9225.1 ID=prot_H-paniculata_contig3456.9225.1|Name=mRNA_H-paniculata_contig3456.9225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MFVENDGVHRGAGIAAVGGALLAAALTAVAVSCVYSGHSWKPSEGVADCF
RVDMGDNPYEPGQAIGAGLKSELWKGNHSNLTILETGEDTPVLGLLSVVR
NAETDGETFLSTANRLLRQLLDFAVMGLPSDEDAQFVTPAGVMMKGVLPE
EDLEVCAITLYLEHEEPGVFNFELDAAFPSFERGSLRVRSLTRGSAKELP
RDMAGKQVLLLAPVVTFSEPVLAALERLSHVGVKEEDVTLVCVVISLKAV
EQLTEEAEDMSLICAAMDGETRGNDNQIVPGVGDFSRRYFEAKRTVEENA
AKSLHAANKKSSGGWWRPWKRAG*
back to top

mRNA from alignment at H-paniculata_contig3456:3768..14383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3456.9225.1 ID=mRNA_H-paniculata_contig3456.9225.1|Name=mRNA_H-paniculata_contig3456.9225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10616bp|location=Sequence derived from alignment at H-paniculata_contig3456:3768..14383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTACGCGGGCAAAGAGCAGCAACAACAAGAGCGGGGATTAACAACAC
ACCGCCATGGACCATGTTTGTGGAGAATGACGGAGTGCACCGAGGCGCGG
GCATTGCGGCAGTGGGGGGGGCGCTGCTAGCGGCTGCTTTGACCGCCGTA
GCGGTGAGTTGTGTTTATTCTGGGCATAGCGTAGGCACGGCGTAGATGAT
CAAGAAATATTCATTGTATGGGTGTTTAATTTAGGGGTCATCCAGCGCTC
TGGTAACGAAGATTTAGCGATTTTTGAGCGCGGAGGGTCCTCAGATTGGC
AAATTTTAATCGTGCGAGTGTTCACCGCCTCGTGTTTGTTTGGGAACAGC
GCCAGCGTGATGCACCAACCATCGAGCAAGGTCATTTTGACTGATAGTAG
GATGGGATATTATTGGTGAGACAATTTGCCTTTTGTTACGATGAAATCAG
TGCAGGGAGGGTCGCGGCACACGGTCATGTTCGAAGGTCCACATTTTGTT
CGACGACCGTTGTCGACTGGCAGTGAACAGCCTTCATGCCTGTGTGTCTT
CGGCGCGGAGGTAGTACAGCTGATAGACTCCGGTGCACTGGGTTGAGCGG
TGGCAATGTTTTTTCACGTTTTTATTGCAACGCTAGAATATTTGTTGAAG
GAAAATAATACAATTTTCACCAATTATCCCACAAAGTTATCCCCAGAAAC
AACAGTTCTTAACAAAGCTCAGCAGCAATTATTCGCAGTTTCGATTGGTG
AAGGTCCACCTCTAAATCATGTGCATCCACTGTGAACTGTTCGAATATCT
CTTTACCTTACAGTGGAAACCCTCCGAAGGCGTGGCCGATTGCTTCCGCG
TAGACATGGGGGATAATCCGTATGAACCCGGACAGGCGATTGGAGCAGGG
CTTAAATCGGAGCTATGGAAAGGCAATCACTCAAATTTGACGATTCTGGA
GACTGGAGAGGACACTCCTGTGCTCGTGAGTGCCGGAGACTTTCAATAGC
GGCGCGGGGATGCCACGACCACTGCTGAAAGAGCACAAAACTATAACTGT
GTCCGCACTTGGTCTGGTGGATTATTCTCGTATTTGTCTTTGTGTAGGTG
AAGAATGGATAGTGTAGAGTGGGATATTCAATCCTGGAATATAGCGCCAA
TAGCTAAGATTATGGTGCGTTTGAGGCATGCACGCAAGCGCAACGATGAG
CTAAAAGGCAGCCCCACAAATCTGGAAAAATTTCCTCTGTCGAAAACATT
TTTGCACCCCCCCCCCCTTGTCCTGTAAGTTTGTTAATCTCGGTCGAAGA
GTTCGTTTATGCAATCTGGGATGTCTCCTGAACTGGTACTTGTAACGCCC
TATAGCAAAAGTGCTTAGGACCATGGAGCCACTCCATCAGGAGTACATAT
GTAAGCAATTTTTACCCCATCAAGTATATCCCATACGAAGCGACGTGTTC
GCTATGGGTAGCGTGACGTTTATACGTACGCGCGGAGATCGAAGGCCCGT
AGAGTACTTGGGGTATAGCTACTAAATGCTGCCGGGTGTGCGACATTTGG
TTATTCGGGATTATGCCCCAAACTCCCGTGACAGAATCCGCTTGGCGTAA
CAACGCAAGGATAATGACTGCTGTAGCAGCTAATATCGCGCCTGTGAAGC
GCAGCCTGGTCGGCGAAAACCCAGCTTGTTCCGTCACGGCACTGTAGGAA
TGTAAGGTGAATGGCCAGAAGGCTTGCGGCATGCGTTTTCATGCAGACAC
TCCCCACCTCCCCTCCTCCATTTTGTGAAGGCTGTTTACATGACCCCCAA
AATCTGGTAGAAGAGAAGAACGGGCGACCAGCTGGGAGAGAGACAGAACC
GACCGCGAACCGGTTCGGCTGAAATTGACGGGACCGTGCCGCGAACCGGT
TCCAGTTCTGGTCACGGGGAAACTCAAGTTGCAATGTCGTTCAGAAAGCT
TTTTCTGTTCGTTTGTGTTTTTTTTCATTTCTACTTCGCTTCTCGATACT
CGACAGGGTCTACTATCGGTGGTTCGAAATGCGGAGACCGACGGCGAAAC
GTTCTTGTCCACAGCTAACCGTTTGTTGAGGCAGCTTCTAGACTTCGCGG
TCATGGGGCTTCCAAGCGACGAAGATGCGCAGTTTGTAACGCCAGCAGGT
GTCATGATGAAGGTGAATCGGTGTTGTGAAATAAGATTAGCAGTTCGGGA
ATGAAACGCAACGCTAAAATTGAAAATCTGTTTGTGGAGAGAAGTACCCT
ATAGAAGCGGATAATAATTCCCAGTAAAGCCTTTAGAGGACAGAACACCC
TTTTCATAATGGCGTCGTCGATAGGATCCCTGACCACGGGATCTGAAAGT
CATGAAGTCGAATCCGACCATGATACACCGAAAAAAGATATTTGTGAGCA
GGTCGCAAAAATGGTGGGGGAACATGGATAAAACGTTCATATAAACTTCT
AGTAAGACAATGTGGAGGCGGATGACCTACGCGCAAGAGGGGAGGATATT
GTAAATAAAAGAGAAGTGAACGTCCTCACCGCGAGCCAGCGAAACCGGTT
ACCCCTAGTAGACGCTTGCAGAATAGCGAAGAGCCTGATCAACGGGGGGA
TGATGTGTAGCAGGATAATTCTCCAGGATAGTCTGTAGAGGACAGAACAC
CCCTGTGACATATTTAAAAGAAGAATAAATCGAGATGTTTATACATGTAC
TTCAATCCCAACACTGTATATTCTAATCGAGGCAAACTCTCTACCGTTGC
TATTTTGAGGTTGTGGAGAATCTGTAGGGTGTTTGGTGGCAGGTCCGTTA
CAAAACACTAACAATTGTGACCACTTGGTTTCTGGATGAAGCTAAGCTCG
GGAAACCGTGTGAGCTATTCAAATATTCTTACTTACCACTTGACGGATAG
TTGTTTTTTTTTACGTTGGAACAATATGGCTACTCTTTTTCGACGCTTCC
GTTCGCGATAACGGAAAATCGACCGGCTTCATACGACAGTAATACCGTTA
CAATGACTTGACTAGTGCGGCGAGATGATGTTCTAATGATACTGATGGAG
GGAATTCTAATATGTATAAATATGTAGTTTTACCGTTGCAACTTTCCAAC
GAGTATATCATCACATCATTACACCCCCTAACGGAAGAATAGGAGTACTT
CCAATGGCTTGGACCAAAAGTTCGAAGTGTTCGCCTCGAGGGTCATTCAG
CATGACTACATCTATTTTTTCATGTACGTGCCCAGGACCATTTAGGACTA
CTCTGTGTGAAATGACTAGTAAAAGGAATAAATAGTGGGTGAACCCTTTA
TTTTCTCTGTCACCCCGCAAATGCTGAAAAGTAGACGAATATGTTATAAA
CATTCGCCTAAATTTGTTTTTTGAAAATACTTGTTCTCTTCGGCGGGGGC
ACCGCTACGACAAGCATGGCTATCCCGCTCAAACGATGACATCTTCTATC
CAAGACGGCGTTCTTCGCGCATTGGTATTGCCTATTCATAGCATGGCAAC
GCTGCAATACTAAACCTTTTTGACACGCAATACACTGTTGAAACAAGCAT
GACTCACTCCAACGCTCCAACGACGTTACGATTCCATACATACTACAAGC
AGGATGTTCTTGCCGAAGACGTTCGCACGCACCATTTACACAGTTACAAT
GCAACAATGTTACAATAGTACGTGGTTACATCGTTATGACGTTATCTCGT
TACAAGACACTTTACATCGTTACAGCGTAGGGCATGGTTCCAGACGACAC
CGTTACAACATTACACCATCGTAACATCACACCATTACAACGTTAAACCG
TTAGGCCATCAGGTCTTTATAGCATTAGACTGTTGCATCATAATACTCTC
ACAATATCACACCATGACAACGTCAAACCGTCACGTCAGTACATCGTCGC
TATGTTACATAATTCCACCATTGTGCCGTTGCATCATTACATCGTCACGA
CATGAAACCGTTTCAAAATGACACCATTACAACATGAAACCATCACATCC
TCATACCGACCGTTACACCAGTACACCGGTACAACACGATACCGTTACAA
CCAACATGACACCATTACGCCGACAGGGTGTGCTGCCAGAGGAAGACTTG
GAGGTGTGCGCGATCACTCTTTATCTGGAGCACGAGGAGCCGGGAGTGTT
CAACTTCGAGTTGGACGCAGCCTTCCCGTCTTTCGAACGCGGTTCTTTGC
GCGTAAGAAGCCTGACCCGGGGATCTGCAAAGGAGTTGCCCCGCGATATG
GCGGGAAAACAAGTATTGTTGCTTGCGCCAGTGGTGAGTGAACACATGAG
AGAAAGATCGGATGGGCGCGAGGACGTACGGGTGTAGTGTAGTATAATGT
AGTATACTCTGTATCTACTGTAGTGTACTGGCTGCAGATGAATATAGTTA
ACCGACTTGATAACAATCTTTTGAAAGGGGGTGCGTGACCTCTTTGACCG
CGCACGTGACGTTTTTGTCCCCATACAAATTGCGTGTATGTATAGCTCGG
ACCATCACAATCATAACATTTGAAGACAATGGATGAAAGGAAAAGACAGA
CAGATAGACAGATAGACAATATGCACTAATAAATATACACTATGTCGTGA
ACGCGGCGAAAGGAAAAGCTTGGGTATGATCCGCCCGCCCACCCACCAGC
ACCCTTTTGCCACCCACCCTTGTTTTTTCTTCTCCCTATCGTGTTAGGTA
TTTTGGTCATTTCAGCTGATCATTGTGTAATCGCTGTATGTCTCAATGCC
TTTGTCAGCAAACCAGTTCATCACAATTAAATTTGAATGCCCGGCCGAAG
CACAATACTTCTAGTTTGTACTGTTTCATTAGAGAATCGGACGTTGACTG
CTGTTGGTTATTCTAGCTGGGTACTGTACTTCGATTTTATATCCAACATA
CAGGTAAAACCAGGAATTTACTGCGAGGCTTTACCGAGTACATAGATTGA
CACCAAGAAGGTATAGCACCGTGTGTGAAAGACTTGGGTGGCTACTACCG
TAACATAGAGGAATCTGGTTGCAATCCTGCACTGAAGAGTTACAAGTTGC
TTTTTACAAACATGCCTTCACGTTATGTTTCGTATATGCAGCGGAGATGG
CGTTTTCCGGGGCCCAGGGGACACAATATCCGGTGGATATCCACCGATGA
AAATACATGAGCAAGTTCATGGGGTTTTTCGCGATCATACATATTGCGCC
ATATTAAATTTTATGTAGCAAAAACATTTGATCCTGAATGCAAAGACAAT
TTTCAACGTGCGGTGAAGTTGGCTGTTCATTGGTCACTGTGGTTCTATCT
GCCACCCGTGAATTATGTCGTAATCTCCACATAAATCTCTCACAGGTAAC
GTTCTCCGAGCCCGTGTTGGCAGCATTGGAGAGGCTGTCTCATGTTGGTG
TCAAGGAGGAAGACGTCACGCTAGTTTGCGTCGTCATTAGTCTCAAAGCT
GTCGAGCAACTCACGGAGGAGGCCGAAGATATGAGCTTGGTGAGAGAGAG
AGAGAAAGAAAGAGAGAGAGAGACTAAGAGAGACAAAGAGAATCACTGCT
CTATGCTGACTGGTTCATAATAAAACGTGATGTATAAAATATAGGAATAG
CCGGCCGAAAATAGTGGTGTAAAGTTAGATTTCAGTGCTGCATGCACGGG
TCAGACGTGAGATAGTTTTCTGCGATACTTTGGCATGTCATTGTCGTTAG
ATTGATCGACAGTAGCCAGCACACCCCGCGCAGGTGCCTTTCAATCGTCT
CTCATAAATGCAATAGTCAAGAATATTAAATGTTTTTCTCGTTTCATGTG
TTTAATGCGCTTGTGTACAGAAATTTTCTTGGGCGAATACAAAGCTCAAG
TAGACACGCTCCCGTTCGTTCGGTTGTTGTAACTGTTATTGTTGTGCAGA
TATGTGCTGCGATGGATGGAGAAACTCGCGGCAATGATAACCAGGTACTT
TTCGAGAATTGCGTATACTGTACATGTCATACTCCAGGAAAGGTTAAATC
AACCAGCTCCTGCAACACCCCGAGGGGCTACTTTTTTGGAAGTCGATTGT
CTCAAGAAGCAACAGCCTACACTACTGACGGAACTCGTTTATCTAATGAC
AAATACACCTCTCTGAGCAGGGCTGTGGTTGTGGGGTGGAGGGAAACTTC
AACGAGCGCCGCTCCGCAAGGCGGCTTGGAAATAAACTCAAATCAAAACC
TATTCAATGGAATGCGTACATGCATGCCCGAAGATGCACAATACACGATT
TGGAATGGCCATATATTCTGTTTAAAAGGGGATCATCTGTTGCCGACCTG
CTTCGCGACGCGGCTCAACCCTTGAAGTAAATCGGCCCGGACTATCCCCC
TCAACCCACCCTAGCCCGACTCCTCTAGACGAGATATTCTAATGACGCAG
CCTCCGGCGGACCCTGAATAAGAACAATAAAAGAACCCGCCGGTCCCGCG
GCCAAACTGCCGCTATTAGGGGCGAGGGGGTCCAAAGCAAACAAGTGAGG
TATGACTATAACACGTATCTCGCAGTCTCGATCTCTTCACCTTCGCGGAG
GTGTTGTGCGTATATTCAAAATTGTTTGAATAGCTGCCAGGTGAGAATTC
ATCTGCAAGCTTGTCCAGTGACTGATTTTGAACACGAGGCGATAACATGT
GAAGGCTGTGTCGATTTGTTTTGTGCGTTGATCTTCTATTATTTTTCGTC
CTGGTGATGGTGTGCCTTCTACCACAGGGAAAAACGGCGGTCAGTTACCA
ACCTTGCCGTCGCGAAAAGCGCAAGACAGGCGTTCATTTACACATGAGTA
CAACCACACGCAACGCTGGCACCTCTGGTGTATGACACATGAACCACGTA
CAATATAGGTTACTTTTATAACAGCTAATAGCTAAAAGGCAAAGTCCACA
TATATTTTGACTGAAGGGTCTGCTCGTCTGACATGTGACGAGATTAACGA
ACGATAGAATAGACATCCTGTCGTAACTACTATTGACGATACAAGAGAGG
TGGTGCTACGTATTGTACAGAAAACAAACATTGAAAAGGCGTGAAGATGT
CGAAGTCAATATGTATTACCTGCCACAGGGAAAACGGCTATATAGATATA
CCAACCTCGCCGTCGCGAAAAGCGCGAAGAGAGGCGCACAGTCTCTGCGC
GGGTATGTGAGAGAAACGACGAGCCTGCGACGAACGTCGTGCCACGAATC
ATGACAGAGGGCGGGAAAATCATGGGAAGTGGTTGTGACTGCAAAAGATG
TCGACGGACAGAGTTACAAGAACACAAGCTAACATACATGCAAGAAAAAT
CAAGCGTTCGCCACAGAAACTAGTAGCTTCTCGACCTGCGGCGATAACGG
CGAGGACTCGCTCTCCTTCTACAAGGGCCTGGCGCACCACTGCGTGATGA
AGCGGGAAGACTGGATGAATGAGGAAGAGCTAATAACAGCCCGGGGACAA
CAACTGAGTGCATTCAGACAAAGGTTCTATTTCGTCCTTCAACGGGCCCT
CTCACGGCGCACACGCCTCTTCCTCTCCACAGCAAAATCGCATCGCCAGA
AGATCCAGTCTTCGGGCTACTCGCGGCGTGAAGTGTCGCCACTAGCAATG
CTTCAGCCAGCCTGGAACTACGGGAACTCAGCACACAGAAACGGGGAGAG
AACAAGCTGGAGGGAAAGGAAGTTGCCCTTAGCTTAGCGGCACTGAGTCG
CGACGCACGGAAGCTGTGCGTTAAAATAGGCTCGCAGGTAGATGAGATAG
ACGTGTAAAAGAGCGCATGCGCTCCTGACCGAGTAACTACGCACACAGGC
GCCCCCCCCCCATGATGGAGGCGCTTAGCACGCGACCCAGATGACAACAC
CCCTGGTTAGCGCAGTCTTTGCTAATGTAACAGAATAGATGAAGCCACTG
GAATTTCGTGCAGGGCACCATTTCTAGGCAAGGATTGTACAGGGCCCGGT
GCCGTAGGGGGTTAAAGGACGTCCAGGGTTTCGAGAAATCGTGTTGGAAA
ACTGAAAACTGGCATCACCAGGGGTGATGTACCCTCATGATCTGCGGCAG
ATACTCAACGTTCTAGAAAATGACACACCTTGATTTTTTGTCTTTTAATG
AATTGTAAAGCCACGGCTACGCTCGTGCATCAAGTCATATGTACGCGTTT
TTTCTTCGAGACTTCCTTACACGGGCTCTCTGCGCTCACCATGGCTCGCT
ATTGTGTCACTCAAAACAGCTGCTGCTGCAGCAGCAGCAGCAGTAGGTAG
TAGCCTATTTCTGTTGCTTTTCAGCCGTGGTGATCATTTCGAGGAAGCAG
CTTGTAGATAGAGTGAGGGAATTTAGACCTCCTCGTGATTGCCATCATAG
TCATGGCCTTAGCATGTTATTTGGTGGTAATGATGGTGTTATTTTAGGAG
GAGGTGCTTGTTTTTTTATTTATACAATTCTTGGCGCCTTCACGACTCGT
GTTGACAATGCCTTGACACATCAAGTTTCATGTCGAAGTTCAAGATGCCG
TGTGTACTGCAGTGTTTTTCGTCAACTGTCGACTGCTTTGTATCCATACC
GAGTACCTTCTATTATGAGTGCAAAACGCTTTCTCAAAGAGAAGCGTGAG
CTAGTGTGTGCCTAACGGCTTCAGGGTGTAGGAGATTTTTTTTATTAGCC
CTTTCAGCGGCTTTTTAGTTGTTGTGAAGAGGCTCCTTCGGCCCCCCAAA
AAGCATTCTGATCATGAATGTTTAACTCTACAGCCCTCGTTGCGCACAGA
ACCATACCAATCTCCCCTCTGTGCTGGATTGGCTATCTGCATAGTGCCGG
CCTTTTGTACCAGTAAAAATGTAAACAGGCGTTATATTGTTATCTTTCCT
TTCTTTTTGAGGCCGGGATTAGGTGTGTAATTTCTGTTTGCAGACTGTTG
TGGTGTTTATTTCTGTAGTGTAAAGTGTGGATTTACAAATATCAAGTATC
TGTAGTTTTTCGAAAACGCTGTTAAAACAACAAAAAGAGTAGGAACTACA
GTATTCAACGTCTTGGAAGAAACTACAATGCGGTCGTGCTATTGGTCGAA
CTCTATAGCAAAGGTTTTGTAAAAAAATTACGGTAGCATCTAGTCCTGTT
GATGGCATATCGCGATACGTAGGCGTGATAGAATCCAAGACAGCGGTGGA
TGAAAGGACACTTGACGTTATTGAATTCACACGTTGCTCTGCGGGAAATC
GCTTCACACTCGATGTCCCCCGGCGCCGTCAATCTGCGCGCAGCGAGTAT
TTGTCCGTTTAGTATTCTTGGGTGTGCGAATTTTTGAAGTCACCTTAGGG
GGTCTAACACGTTCGGTGGATGCCTTGGCCGTTGCCTCGCTTGACCTTGA
CGTATTTCTGTTGGACAACCACGCCATGGCTCAACATAGCGCCATATTCC
ATTGGGACCGAGACGCTTTTCTTACGCTTTTCTGCTCTTGGGTCCGAACG
TCCATTCCAGCAATTCATCACTGTTCACACTCCATGCCCGCCCACGTCCA
TTCGTGGATCCATCCATTTCCTGTCGCTGCAGTACACAAGTGTTTGTTTT
TTATGAAATTCTCGTTTTTTTCCCTGAACAAATTTCATTGAAATTGAGGC
ATTAGACTCTCGAGGCACATGAGGAGCGGGGGAAGAACTGAGCTCTCGTT
TCAAATGGCCCTCGGTTGTTTCTTGGGTTCTCTAATTTTGTTTATATGCT
GTATATGAAGTCTATATATTCTCTTAATCTTGGTTCTCATGAGCCAGTCG
GTTACTGCTTTTTTCCCACCAAACAGATTGTTCCTGGTGTGGGCGACTTC
TCGCGGCGATACTTCGAAGCCAAGAGAACAGTTGAGGAAAATGCGGCCAA
GTCATTACACGCGGCCAACAAGAAGTCGAGCGGAGGGTGGTGGCGGCCGT
GGAAGAGGGCTGGATAGCAGGGTAGATCCATCGGAGAAGTGACGGCATGA
ATGTCCGAAAAATGGCACGGCCAGCCCTAACAACATAGAACTAGTTGTGG
CTTCGAAGGTGCCGCAACAGCCAGTGGTACTGACTCTCACCGGGTGGTGT
CTTGCAATACGACGTACCCATGATGACATTTTCTAGAATCGTCTGCATAT
AGCTACTGCATCATGTAGGTAGGGAGGCATGGTAGGTGTATGCTGGCGTA
CAACCCGGATCGTGGTTTGGCTACGAAATGTCGGCTTTTGGTGAGTGTGA
ATCTTTGGGTTGTAGCCGGTGGCGAGCTGGCCCTTCTGGTGATACGTATT
ATTCATGGACGCCATTGAGTGGTACTGGCAGTCGGTGTACTACTAGTGGC
ACAGAGTGGGACAGGGCTACTTCTGATGTCTTCGTTGGTCTACTTGTTTG
GGAGACACGGGACGGTATCCTATGCCTCACTCGTCAAATGCGTCAATCAC
AGGTTGCTTGATTTACAGTAGATGTTTCTGTGGGTTCTGGTCACGTATAT
ACAACCTATTCGCCGCATATTCGTATTGCAAATAATTTTATACCACAAGA
AAGTACCTGGGAATATCACCAGGTTGTATCGTGAGCGCGCGAAGGTACGC
AAGCGCGCCCATCTATATGTTTTTCCGTAATCAATTTGCCCTTTAACAAT
AATATTTAAAGACCTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3456:3768..14383-

>mRNA_H-paniculata_contig3456.9225.1 ID=mRNA_H-paniculata_contig3456.9225.1|Name=mRNA_H-paniculata_contig3456.9225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig3456:3768..14383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGTGGAGAATGACGGAGTGCACCGAGGCGCGGGCATTGCGGCAGT
GGGGGGGGCGCTGCTAGCGGCTGCTTTGACCGCCGTAGCGGTGAGTTGTG
TTTATTCTGGGCATAGCATGTTTGTGGAGAATGACGGAGTGCACCGAGGC
GCGGGCATTGCGGCAGTGGGGGGGGCGCTGCTAGCGGCTGCTTTGACCGC
CGTAGCGGTGAGTTGTGTTTATTCTGGGCATAGCTGGAAACCCTCCGAAG
GCGTGGCCGATTGCTTCCGCGTAGACATGGGGGATAATCCGTATGAACCC
GGACAGGCGATTGGAGCAGGGCTTAAATCGGAGCTATGGAAAGGCAATCA
CTCAAATTTGACGATTCTGGAGACTGGAGAGGACACTCCTGTGCTCTGGA
AACCCTCCGAAGGCGTGGCCGATTGCTTCCGCGTAGACATGGGGGATAAT
CCGTATGAACCCGGACAGGCGATTGGAGCAGGGCTTAAATCGGAGCTATG
GAAAGGCAATCACTCAAATTTGACGATTCTGGAGACTGGAGAGGACACTC
CTGTGCTCGGTCTACTATCGGTGGTTCGAAATGCGGAGACCGACGGCGAA
ACGTTCTTGTCCACAGCTAACCGTTTGTTGAGGCAGCTTCTAGACTTCGC
GGTCATGGGGCTTCCAAGCGACGAAGATGCGCAGTTTGTAACGCCAGCAG
GTGTCATGATGAAGGGTCTACTATCGGTGGTTCGAAATGCGGAGACCGAC
GGCGAAACGTTCTTGTCCACAGCTAACCGTTTGTTGAGGCAGCTTCTAGA
CTTCGCGGTCATGGGGCTTCCAAGCGACGAAGATGCGCAGTTTGTAACGC
CAGCAGGTGTCATGATGAAGGGTGTGCTGCCAGAGGAAGACTTGGAGGTG
TGCGCGATCACTCTTTATCTGGAGCACGAGGAGCCGGGAGTGTTCAACTT
CGAGTTGGACGCAGCCTTCCCGTCTTTCGAACGCGGTTCTTTGCGCGTAA
GAAGCCTGACCCGGGGATCTGCAAAGGAGTTGCCCCGCGATATGGCGGGA
AAACAAGTATTGTTGCTTGCGCCAGTGGGTGTGCTGCCAGAGGAAGACTT
GGAGGTGTGCGCGATCACTCTTTATCTGGAGCACGAGGAGCCGGGAGTGT
TCAACTTCGAGTTGGACGCAGCCTTCCCGTCTTTCGAACGCGGTTCTTTG
CGCGTAAGAAGCCTGACCCGGGGATCTGCAAAGGAGTTGCCCCGCGATAT
GGCGGGAAAACAAGTATTGTTGCTTGCGCCAGTGGTAACGTTCTCCGAGC
CCGTGTTGGCAGCATTGGAGAGGCTGTCTCATGTTGGTGTCAAGGAGGAA
GACGTCACGCTAGTTTGCGTCGTCATTAGTCTCAAAGCTGTCGAGCAACT
CACGGAGGAGGCCGAAGATATGAGCTTGGTAACGTTCTCCGAGCCCGTGT
TGGCAGCATTGGAGAGGCTGTCTCATGTTGGTGTCAAGGAGGAAGACGTC
ACGCTAGTTTGCGTCGTCATTAGTCTCAAAGCTGTCGAGCAACTCACGGA
GGAGGCCGAAGATATGAGCTTGATATGTGCTGCGATGGATGGAGAAACTC
GCGGCAATGATAACCAGATATGTGCTGCGATGGATGGAGAAACTCGCGGC
AATGATAACCAGATTGTTCCTGGTGTGGGCGACTTCTCGCGGCGATACTT
CGAAGCCAAGAGAACAGTTGAGGAAAATGCGGCCAAGTCATTACACGCGG
CCAACAAGAAGTCGAGCGGAGGGTGGTGGCGGCCGTGGAAGAGGGCTGGA
TAGATTGTTCCTGGTGTGGGCGACTTCTCGCGGCGATACTTCGAAGCCAA
GAGAACAGTTGAGGAAAATGCGGCCAAGTCATTACACGCGGCCAACAAGA
AGTCGAGCGGAGGGTGGTGGCGGCCGTGGAAGAGGGCTGGATAG
back to top