mRNA_H-paniculata_contig3455.9221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3455.9221.1
Unique NamemRNA_H-paniculata_contig3455.9221.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: D8LRL6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL6_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.460e-45
Identity = 77/91 (84.62%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 LNKLKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERLDSLVKKEALVCKFASCGLTGPVRNMLFSSKPETICDILIK 273
            LNKLKRACRQYGIPRWPYRQVRSIRSTI SL+ ALEKC+S  E ASLK+RL+SL+KKE+LVCKFASCGLTGP+RNMLFSSKPE+ICD+LIK
Sbjct:   68 LNKLKRACRQYGIPRWPYRQVRSIRSTIHSLKNALEKCDSDIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIK 158
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BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 6.200e-44
Identity = 77/91 (84.62%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 LNKLKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERLDSLVKKEALVCKFASCGLTGPVRNMLFSSKPETICDILIK 273
            LNKLKRACRQYGIPRWPYRQVRSIRSTIQSL+ ALEKC+S+ E ASLK+RL+SL+KKE+LVCKFASCGLTGP+RNMLFSSKPE+ICD+L+K
Sbjct:   35 LNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLVK 125
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BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.050e-10
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 LNKLKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERLDSLVKKEALVCKFASCGLTGPVRNMLFSSKP 246
            L  LK+ CRQYGI RWP+RQV S+  ++  LE+ +      + AA+L+ +   L  K  L+ K AS GL   V N +F+++P
Sbjct:   37 LTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 118
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BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: A0A2D4C9E6_PYTIN (RWP-RK domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9E6_PYTIN)

HSP 1 Score: 54.3 bits (129), Expect = 1.740e-6
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   10 LKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERLD 156
            +K+ CR+ G+PRWP+RQ+R +R +I S+EKAL  CES+ +  S  + L+
Sbjct:  119 MKKICRKNGVPRWPHRQIRGLRKSIWSIEKALRSCESESQRQSYLDHLE 167
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BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: K3WJ34_GLOUD (RWP-RK domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJ34_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 2.000e-6
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   10 LKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERLDSLVKKEALVCKFASCGLTGPVR 222
            +K+ CR+ G+PRWP+RQ+R +R +I S+EKAL  CES+ +  S  + L     K   + K    G  GP R
Sbjct:  153 MKKICRKNGVPRWPHRQIRGLRKSIWSIEKALRCCESETQKRSYNDHLQKQRTKLLTILK----GPDGPSR 219
[Close]
BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: A0A2P4XFB3_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFB3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.270e-6
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   10 LKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERL 153
            +K+ CR+ G+PRWP+RQ+R +R +I S+EKAL  CES+ +  S  + L
Sbjct:   24 MKKICRKNGVPRWPHRQIRGLRKSIWSIEKALRCCESEAQRRSYNDHL 71
[Close]
BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: L1JQR2_GUITC (RWP-RK domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JQR2_GUITC)

HSP 1 Score: 53.9 bits (128), Expect = 2.980e-6
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 LNKLKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERLDSL 162
            +  LK+ACRQYGI RWP+R+++SI   +  LE AL  CE + E A L+E+  +L
Sbjct:   34 VTSLKKACRQYGIYRWPHRKIKSIDKHLHKLEAALATCEKQEERAHLQEKKAAL 87
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BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: A0A8K1C362_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C362_PYTOL)

HSP 1 Score: 53.5 bits (127), Expect = 3.380e-6
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   10 LKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERLDSLVKKEALVCKFASCGLTGPVRNM 228
            +K+ CR+ G+PRWP+RQ+R +R +I S+EKAL   ES+ +  S  E L+    K A + +    G  GP +++
Sbjct:  118 MKKICRKNGVPRWPHRQIRGLRKSIWSIEKALRTAESEAQRQSYVEHLERQKDKLAAILR----GPDGPGKSL 186
[Close]
BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: G4ZX26_PHYSP (RWP-RK domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZX26_PHYSP)

HSP 1 Score: 53.1 bits (126), Expect = 4.370e-6
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   10 LKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERL 153
            +K+ CR+ G+PRWP+RQ+R +R +I S+EKAL  CES+ +  S  + L
Sbjct:  128 MKKICRKNGVPRWPHRQIRGLRKSIWSIEKALRCCESEAQRLSYNDHL 175
[Close]
BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Match: A0A225WRC1_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WRC1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.730e-6
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   10 LKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKERL 153
            +K+ CR+ G+PRWP+RQ+R +R +I S+EKAL  CES+ +  S  + L
Sbjct:  122 MKKICRKNGVPRWPHRQIRGLRKSIWSIEKALRCCESEAQRRSYNDHL 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3455.9221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LRL6_ECTSI6.460e-4584.62Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5J9E8_9PHAE6.200e-4484.62RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T4_9STRA1.050e-1040.24RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A2D4C9E6_PYTIN1.740e-646.94RWP-RK domain-containing protein n=1 Tax=Pythium i... [more]
K3WJ34_GLOUD2.000e-640.85RWP-RK domain-containing protein n=1 Tax=Globispor... [more]
A0A2P4XFB3_9STRA2.270e-647.92RWP-RK domain-containing protein n=1 Tax=Phytophth... [more]
L1JQR2_GUITC2.980e-648.15RWP-RK domain-containing protein n=3 Tax=Guillardi... [more]
A0A8K1C362_PYTOL3.380e-638.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZX26_PHYSP4.370e-647.92RWP-RK domain-containing protein n=1 Tax=Phytophth... [more]
A0A225WRC1_9STRA4.730e-647.92RWP-RK domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3455contigH-paniculata_contig3455:12544..13403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size298
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.4682848-CDS-H-paniculata_contig3455:12543..127451622930066.4682848-CDS-H-paniculata_contig3455:12543..12745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3455 12544..12745 +
1691481132.9980261-CDS-H-paniculata_contig3455:12543..127451691481132.9980261-CDS-H-paniculata_contig3455:12543..12745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3455 12544..12745 +
1622930066.510962-CDS-H-paniculata_contig3455:13308..134031622930066.510962-CDS-H-paniculata_contig3455:13308..13403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3455 13309..13403 +
1691481133.0096633-CDS-H-paniculata_contig3455:13308..134031691481133.0096633-CDS-H-paniculata_contig3455:13308..13403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3455 13309..13403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3455.9221.1prot_H-paniculata_contig3455.9221.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3455 12544..13403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3455.9221.1

>prot_H-paniculata_contig3455.9221.1 ID=prot_H-paniculata_contig3455.9221.1|Name=mRNA_H-paniculata_contig3455.9221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
LNKLKRACRQYGIPRWPYRQVRSIRSTIQSLEKALEKCESKREAASLKER
LDSLVKKEALVCKFASCGLTGPVRNMLFSSKPETICDILIKVGVIAVQ*
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mRNA from alignment at H-paniculata_contig3455:12544..13403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3455.9221.1 ID=mRNA_H-paniculata_contig3455.9221.1|Name=mRNA_H-paniculata_contig3455.9221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=860bp|location=Sequence derived from alignment at H-paniculata_contig3455:12544..13403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAATAAGCTGAAACGTGCGTGTCGACAATACGGTATTCCGAGGTGGCC
TTACCGTCAAGTCCGCAGCATTCGGAGCACGATACAGAGCTTGGAGAAGG
CGCTCGAGAAGTGCGAGAGCAAGAGGGAAGCCGCCAGCCTCAAAGAGCGC
TTGGATTCGCTCGTGAAGAAGGAGGCTCTGGTGTGCAAGTTCGCCAGCTG
CGGTGAGTCGCAAGACATGCCCATCCATCGATCAGGCCATCTACCCATCG
ACCCGTTGTTCGTTTTTCTGCTGCCACTTCACGTCTGTCTGTCTGTTTGT
TACGTTTTCTTCTCTTTCTCTCGCTCGCTCTTTCTCTCTCTGTGTCTGTG
TTCTACGTGTCATGCGTCTGCTGTTGATGTTGCTGCAGCACCAACCGAGG
TGTCCATGTGCTTTTTTTTCAATCACAAAGTTCTGGAAAGCTGTTTGACT
CGTTCGCGGCATAGCAACGCCTTTTTCGCTTTGGGTGGATCATGCCATTG
AAGTGATCGTGTCTAGGAACAGCGGTTGCTGCCTCGGCCTCCCATCTTTC
GCTGCCCCCCAAACGGTTGCGTGAGGCAGTTGAATAGCAAATTCATGACG
TTTAGATGTTACTCATGATGCCTCAATGTACCCCCTCTCCGTGCCCTTTA
GGGCGCGTGGTCAATGGTCCAACGGTCCAAGACACGCGAAACATGAATAA
ACGGCACCCCCCGCCGCTCGCCCACCCCGTCCTGGTTTATTACGAAACGG
CTCTTGATCGATCAGGGCTCACGGGACCTGTGCGAAATATGCTTTTCAGC
TCCAAGCCAGAGACCATATGCGACATCCTCATCAAGGTGGGGGTGATAGC
AGTCCAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3455:12544..13403+

>mRNA_H-paniculata_contig3455.9221.1 ID=mRNA_H-paniculata_contig3455.9221.1|Name=mRNA_H-paniculata_contig3455.9221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig3455:12544..13403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAATAAGCTGAAACGTGCGTGTCGACAATACGGTATTCCGAGGTGGCC
TTACCGTCAAGTCCGCAGCATTCGGAGCACGATACAGAGCTTGGAGAAGG
CGCTCGAGAAGTGCGAGAGCAAGAGGGAAGCCGCCAGCCTCAAAGAGCGC
TTGGATTCGCTCGTGAAGAAGGAGGCTCTGGTGTGCAAGTTCGCCAGCTG
CGCTGAATAAGCTGAAACGTGCGTGTCGACAATACGGTATTCCGAGGTGG
CCTTACCGTCAAGTCCGCAGCATTCGGAGCACGATACAGAGCTTGGAGAA
GGCGCTCGAGAAGTGCGAGAGCAAGAGGGAAGCCGCCAGCCTCAAAGAGC
GCTTGGATTCGCTCGTGAAGAAGGAGGCTCTGGTGTGCAAGTTCGCCAGC
TGCGGGCTCACGGGACCTGTGCGAAATATGCTTTTCAGCTCCAAGCCAGA
GACCATATGCGACATCCTCATCAAGGTGGGGGTGATAGCAGTCCAGTAGG
GCTCACGGGACCTGTGCGAAATATGCTTTTCAGCTCCAAGCCAGAGACCA
TATGCGACATCCTCATCAAGGTGGGGGTGATAGCAGTCCAGTAG
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