mRNA_H-paniculata_contig34542.9220.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34542.9220.1
Unique NamemRNA_H-paniculata_contig34542.9220.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: D7G688_ECTSI (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G688_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 7.810e-42
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPS-AETAGSAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L+VYGVLPAATVFML YSKVSTLLSKRALFYATA+PFF FYLFFKLVMYPMRD LHPS A      G+PEG+SY+VNLYR+WTFALFYVVSELYSSV
Sbjct:   64 FLKVYGVLPAATVFMLAYSKVSTLLSKRALFYATALPFFVFYLFFKLVMYPMRDSLHPSEAAVEALVGLPEGISYVVNLYRNWTFALFYVVSELYSSV 161          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: A0A7S3UYU3_HETAK (ADP,ATP carrier protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYU3_HETAK)

HSP 1 Score: 107 bits (266), Expect = 5.960e-25
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAGSAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L++YGVLPAAT+FML YSK ST+LSK  LFY TA PFF FYL F L +YP+R  LHP+    G+  +P G++YL  +  +WTFAL+YVVSE+YS++
Sbjct:  146 FLKLYGVLPAATLFMLGYSKASTVLSKPRLFYGTAAPFFLFYLLFDLAIYPLRGKLHPAP---GTLRLPGGLAYLSKILENWTFALYYVVSEVYSAM 239          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: W7TBM9_9STRA (ADP,ATP carrier protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBM9_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.290e-24
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAGSAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L+VYGVLPAA  F + YSK+S  LSK AL+YA   PFF FYL F LV+YP R  LHP+A TA S    +G+SYL+ LY +WTFAL+Y+VSE+YSSV
Sbjct:  174 FLKVYGVLPAAAAFTVAYSKMSNALSKDALYYALVAPFFLFYLLFDLVIYPRRHQLHPTA-TATSF---QGLSYLLGLYNNWTFALYYIVSEIYSSV 266          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: A0A7S4PLB4_GUITH (ADP,ATP carrier protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PLB4_GUITH)

HSP 1 Score: 97.4 bits (241), Expect = 2.390e-22
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAGSAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L+VYGVLPAAT+FML YS++S + SK+ALFY TA+PF AFY  F   +YP R+ILHP         + E   Y V+L  +W+++LFYVVSEL+ SV
Sbjct:  126 FLKVYGVLPAATMFMLYYSRISNIFSKKALFYVTALPFMAFYAVFAYFIYPNREILHPPIPQ----DLDERWKYAVSLLSNWSYSLFYVVSELWGSV 218          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: A0A2H0VPK6_9BACT (ADP,ATP carrier protein n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9 TaxID=1973935 RepID=A0A2H0VPK6_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 7.590e-22
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAGSAGV-PEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L+V+GVLP A +FML+Y+K+S  LSK  LFYAT  PF  F+  F  ++YP+RD+LHP++      G+ PEG   L+ L R+WTF+LFY+++EL+ SV
Sbjct:   65 FLKVWGVLPFAVLFMLIYAKLSNKLSKEKLFYATITPFLVFFAAFAFIIYPLRDVLHPTSAADTLQGILPEGFKGLIALLRNWTFSLFYIMAELWGSV 162          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: L1IL04_GUITC (ADP,ATP carrier protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1IL04_GUITC)

HSP 1 Score: 97.4 bits (241), Expect = 1.520e-21
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAGSAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L+VYGVLPAAT+FML YS++S + SK+ALFY TA+PF AFY  F   +YP R+ILHP         + E   Y V+L  +W+++LFYVVSEL+ SV
Sbjct:  126 FLKVYGVLPAATMFMLYYSRISNIFSKKALFYVTALPFMAFYAVFAYFIYPNREILHPPIPQ----DLDERWKYAVSLLSNWSYSLFYVVSELWGSV 218          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: A0A6G4ZQ23_9BACT (ADP,ATP carrier protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6G4ZQ23_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 1.960e-21
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAGS--AGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L+V+GVLP A +FML+Y+K+S +LSK  LFY T + F  F++ FKLV+YP RD LHP+ E A    A +P G S ++ ++R+WTF+LFY++SEL+ S+
Sbjct:   65 FLKVWGVLPIAILFMLIYAKLSNILSKTKLFYTTIISFLVFFVLFKLVLYPARDFLHPN-ELADKLQAALPGGFSGMIAIFRNWTFSLFYIMSELWGSM 162          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: A0A448ZK66_9STRA (ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK66_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.090e-21
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAGSA-----GVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L++YGVLPAAT F+ +YSK+S +LSK+ LFY+T +PFF F+  F  V+YP  D LHPS  +  S      G   G+S L ++  HWT ALFYV++E+YSSV
Sbjct:  127 FLKIYGVLPAATAFIALYSKMSDVLSKKTLFYSTCIPFFIFFALFDAVIYPNADRLHPSLASVESFLGIANGSEGGLSILASIVAHWTSALFYVMAEIYSSV 228          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: A0A6M1ZTJ2_9BACT (ADP,ATP carrier protein n=1 Tax=Candidatus Anoxychlamydiales bacterium TaxID=2705072 RepID=A0A6M1ZTJ2_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.680e-21
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAG-SAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L++YGVLP A +FML+YSK+S  LSK  LFYAT  PF  F+  F LV+YP +D LHP A      A +P G   L+ ++R+W F+LFYV+SEL+ SV
Sbjct:   64 FLKLYGVLPGAIIFMLIYSKLSNKLSKPGLFYATISPFIIFFALFALVLYPAKDFLHPHALADKLQAALPSGFMGLIAVFRNWIFSLFYVMSELWGSV 161          
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Match: A0A1E7EXX4_9STRA (ADP,ATP carrier protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXX4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.140e-21
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    7 WLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLVMYPMRDILHPSAETAG-----SAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV 297
            +L++YGVLPAAT F+ +YSK+S  L K+ LFY T +PFF F++ F +++YP  D LHP+  +       S+G   GM+ L ++  HWT ALFYVV+E+YSSV
Sbjct:  218 FLKIYGVLPAATAFIALYSKMSDSLGKKTLFYTTCIPFFIFFIIFDMLIYPNTDWLHPTLSSVETFLGISSGGSGGMTVLASIIAHWTSALFYVVAEIYSSV 319          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34542.9220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G688_ECTSI7.810e-4282.65ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UYU3_HETAK5.960e-2557.73ADP,ATP carrier protein (Fragment) n=1 Tax=Heteros... [more]
W7TBM9_9STRA1.290e-2460.82ADP,ATP carrier protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4PLB4_GUITH2.390e-2253.61ADP,ATP carrier protein (Fragment) n=1 Tax=Guillar... [more]
A0A2H0VPK6_9BACT7.590e-2250.00ADP,ATP carrier protein n=1 Tax=Chlamydiae bacteri... [more]
L1IL04_GUITC1.520e-2153.61ADP,ATP carrier protein n=3 Tax=Guillardia theta T... [more]
A0A6G4ZQ23_9BACT1.960e-2150.51ADP,ATP carrier protein n=1 Tax=Chlamydiae bacteri... [more]
A0A448ZK66_9STRA2.090e-2150.98ADP,ATP carrier protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6M1ZTJ2_9BACT2.680e-2152.04ADP,ATP carrier protein n=1 Tax=Candidatus Anoxych... [more]
A0A1E7EXX4_9STRA4.140e-2149.02ADP,ATP carrier protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34542contigH-paniculata_contig34542:1801..2097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7G688
Preferred nameNTT2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.TLC ATP/ADP transporter
EggNOG OGs2RM9E@2759,COG3202@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.4259257-CDS-H-paniculata_contig34542:1800..20971622930066.4259257-CDS-H-paniculata_contig34542:1800..2097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34542 1801..2097 +
1691481132.9804857-CDS-H-paniculata_contig34542:1800..20971691481132.9804857-CDS-H-paniculata_contig34542:1800..2097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34542 1801..2097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34542.9220.1prot_H-paniculata_contig34542.9220.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34542 1801..2097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34542.9220.1

>prot_H-paniculata_contig34542.9220.1 ID=prot_H-paniculata_contig34542.9220.1|Name=mRNA_H-paniculata_contig34542.9220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
LLWLQVYGVLPAATVFMLVYSKVSTLLSKRALFYATAMPFFAFYLFFKLV
MYPMRDILHPSAETAGSAGVPEGMSYLVNLYRHWTFALFYVVSELYSSV
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mRNA from alignment at H-paniculata_contig34542:1801..2097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34542.9220.1 ID=mRNA_H-paniculata_contig34542.9220.1|Name=mRNA_H-paniculata_contig34542.9220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig34542:1801..2097+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTTTGGCTGCAGGTGTACGGAGTACTGCCGGCAGCAACGGTTTTCAT GCTGGTCTACTCCAAGGTCTCCACTCTGCTCTCCAAGCGCGCCTTGTTCT ACGCCACAGCAATGCCATTCTTCGCGTTCTACCTGTTCTTCAAGCTGGTC ATGTACCCCATGCGAGACATTCTTCACCCCTCGGCGGAGACGGCGGGGTC CGCGGGCGTGCCCGAGGGCATGTCTTACCTGGTGAACCTGTATCGCCACT GGACCTTCGCGCTATTTTACGTGGTGTCTGAGCTGTACTCGTCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig34542:1801..2097+

>mRNA_H-paniculata_contig34542.9220.1 ID=mRNA_H-paniculata_contig34542.9220.1|Name=mRNA_H-paniculata_contig34542.9220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig34542:1801..2097+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTTTGGCTGCAGGTGTACGGAGTACTGCCGGCAGCAACGGTTTTCAT
GCTGGTCTACTCCAAGGTCTCCACTCTGCTCTCCAAGCGCGCCTTGTTCT
ACGCCACAGCAATGCCATTCTTCGCGTTCTACCTGTTCTTCAAGCTGGTC
ATGTACCCCATGCGAGACATTCTTCACCCCTCGGCGGAGACGGCGGGGTC
CGCGGGCGTGCCCGAGGGCATGTCTTACCTGGTGAACCTGTATCGCCACT
GGACCTTCGCGCTATTTTACGTGGTGTCTGAGCTGTACTCGTCGGTGTTG
CTTTGGCTGCAGGTGTACGGAGTACTGCCGGCAGCAACGGTTTTCATGCT
GGTCTACTCCAAGGTCTCCACTCTGCTCTCCAAGCGCGCCTTGTTCTACG
CCACAGCAATGCCATTCTTCGCGTTCTACCTGTTCTTCAAGCTGGTCATG
TACCCCATGCGAGACATTCTTCACCCCTCGGCGGAGACGGCGGGGTCCGC
GGGCGTGCCCGAGGGCATGTCTTACCTGGTGAACCTGTATCGCCACTGGA
CCTTCGCGCTATTTTACGTGGTGTCTGAGCTGTACTCGTCGGTG
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