mRNA_H-paniculata_contig3453.9215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3453.9215.1
Unique NamemRNA_H-paniculata_contig3453.9215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3453.9215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3453contigH-paniculata_contig3453:10257..15952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size928
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3453.9215.1prot_H-paniculata_contig3453.9215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3453 10257..15596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.7715824-CDS-H-paniculata_contig3453:10256..104591622930065.7715824-CDS-H-paniculata_contig3453:10256..10459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 10257..10459 -
1691481132.7344763-CDS-H-paniculata_contig3453:10256..104591691481132.7344763-CDS-H-paniculata_contig3453:10256..10459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 10257..10459 -
1622930065.7830215-CDS-H-paniculata_contig3453:10901..109711622930065.7830215-CDS-H-paniculata_contig3453:10901..10971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 10902..10971 -
1691481132.7461817-CDS-H-paniculata_contig3453:10901..109711691481132.7461817-CDS-H-paniculata_contig3453:10901..10971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 10902..10971 -
1622930065.7996345-CDS-H-paniculata_contig3453:15299..155961622930065.7996345-CDS-H-paniculata_contig3453:15299..15596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 15300..15596 -
1691481132.7545702-CDS-H-paniculata_contig3453:15299..155961691481132.7545702-CDS-H-paniculata_contig3453:15299..15596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 15300..15596 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.8165405-UTR-H-paniculata_contig3453:15596..159521622930065.8165405-UTR-H-paniculata_contig3453:15596..15952Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3453 15597..15952 -
1691481132.7626786-UTR-H-paniculata_contig3453:15596..159521691481132.7626786-UTR-H-paniculata_contig3453:15596..15952Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3453 15597..15952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3453.9215.1

>prot_H-paniculata_contig3453.9215.1 ID=prot_H-paniculata_contig3453.9215.1|Name=mRNA_H-paniculata_contig3453.9215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MSSRRRKMSEDNDSSSEGSAGSDVEEEEVAEEGATTFVLSPDLQNAEPQT
GRGSEREESGDGTGAAGADAALKNDDDDEDPEENDDGEESELSVISDDED
TVSVISSVAVSTAAENADVEDAAATAAPGDDQADGDSVGALTMATGAEAQ
LGEEEDRIDGDRVSNASELEGVPDDAATPGGGVEDDGDKE
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mRNA from alignment at H-paniculata_contig3453:10257..15952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3453.9215.1 ID=mRNA_H-paniculata_contig3453.9215.1|Name=mRNA_H-paniculata_contig3453.9215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5696bp|location=Sequence derived from alignment at H-paniculata_contig3453:10257..15952- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTATCATACTTTGCTCCGGCTCTACTGACTGTTGTTGCTAGACGTGGA
AGAGGATCTGAAGTAGCGAGGAAAGCAGCCTTCCGTGGTGTCTCCTTTCG
ACCGAGCTCAGGGATCCATCGCGTATCCTTGACAGAGATATTACTTTTCA
ATCGTGATTATCGAAAAGAGGTTTGGGCAGACGGAAGAAAATTCGCAAAG
AAGCTGAGCAGGCTGTGAGGAGGTCAGCAGCAATCCACACGAACTCGTCA
GGAGTGCTGTTAGAGGTCACAAACAAGTGTTGCACCAACGCAGACATACT
AAACGTCCTTTCTTCTCGAGCGGGGTTTGCTCCATTACCAATAGTTCTTA
TCAATCATGTCTTCGAGAAGAAGAAAGATGTCCGAAGACAATGATAGCAG
CAGCGAAGGTTCGGCTGGGTCAGATGTCGAAGAAGAGGAGGTGGCTGAGG
AAGGAGCGACAACATTCGTTCTCTCTCCAGACTTACAGAATGCTGAGCCG
CAGACGGGGAGAGGGAGCGAAAGGGAGGAGAGCGGGGATGGAACTGGAGC
TGCTGGTGCTGATGCTGCTCTGAAAAATGATGACGACGATGAAGACCCAG
AGGAGAATGACGACGGCGAAGAGAGCGAATTGTCAGTCATCAGCGATGAT
GAGGTATGTTCGTGTCTCTGGTTGTTGCACAAGTGGTCTTGGTGCGAGGA
TGACTTCGAATATTTAATGCACAACCAGCAGGTCACCTTGACTGGAGACG
CTTAGCTGACTCTGTCTGACACGCAACACCACCAAAATAACCCGTGCACG
GCTTTCCCCTCTCTCTGGGGGAGAATTGTGTGTTCGTGTTAGAACGGTTG
TTAGTTTTGCGCATTCATCTTGGTGGGTTGTTTGGGTCAAAGCTATTTTT
GAACCGCGAGATTCTCAACCTCTGCTGCAAATGTATTGGCCTCTCACAGC
ATTGGCGAAGACATGGGAGAGTACGATTAGGTTGGGTAACACGTGCTTGC
ATTTCGTGTGTACCCGTGCAGAGAGTACCGGGAGTTTAGCACGTGCTCAT
GGATGAATCAGCGTGAATTTTGCGTATGGTCTACCTTCTCTTCGATAACC
CCTTCAAAATGTAACATGCGTTACCATACTGCTTTACTAGTTTAGAGGCA
GCTGCACATCAGCAACTGAGTTTCGTAGTCGGCACGCCGAACGCAACACA
TTATAGTCCAGTTCGAATTTTACTGACTGTTGACTGCACTCGAAGCAACC
ACCTCTCACGCATCCGCTGCACCTCACACGGCAGCTATAGTGATAAAGCG
AATCAGGTCCAACCCATTGCGAATTGCAGTAGCCATCTCCGTTGTTGATC
TGCAAGTATCAACTCTCGAAGCATGCACACATGCATTTTTTCGAAAATTC
GAATTTTATATTGAATTTGCAAATTCCTACAGGTGTTATCGAAATCCAGC
ATGTTTGCCTTCAGTCCGTCCACAGCATGTTCCGTGACAGCCCAGGTATT
CGATGAGCTACTCGCATAGAGCAAGGGCCAAAAATATAGTCATATATGAC
ATCAGGTTCCACTCGTTTCGCTTAATGATCTTTCACCGTTGTTCTAATAA
ACTCCAAACTTGTAACTCACTTGCGCGTATGGTATGTATGACGCTATTGC
TACATGCAATCGCGACAACACTTTCTTGACTCTTTCGTTCAAAACTGTTT
CTCGCGGCGACCCTGGGGCCATATCTGTTGAAACGGCCCGTATGATACCG
TCTACCGATAGATCTCAACGAAGTCCTTCCCGATTACATAGCCGACACTA
CTTTCGGCATCACAAGTATAGCACCGTGTGTATTTGTCTGGTAAACAGTG
AGTGAATGAGCTCACCCTGTGCAGTGGTTTCGACAGAATCCCTCTCCCCC
TTGAAAGAACAAGAAAAATTAAGGCCCACGAAATGATTTACGGTAGACAG
AAGTCCGTCGCAGTCCAGGACAGGGAAGTCGTTGAAGACAGCACAGAAAG
AGAGTTGGTATGGCTATGTGCACAACTACTGCGGTGCTCGATTTTTGTTT
TCATTTTTTCTTAGGAAACAGCCTAATCCAGCGCCAAGTCGTCATTTCTA
TGACCGTTTTACTTTTTATTTTTTATTCTTGTACTCCATCTCCAGTGGAT
TAGGGTTTTACTTTCATAACTTTTCACATGTTGGATGCATCGGATCATAA
ACAGATCACACCCGCCATTTTCATGGATAGATTGTCTGATCCGTACAACT
AATCCATACACGACGGATCATTATTGTGTATGAGTCCTGGGCGCAACAAG
TGGCGTTTCGAGGAAAAAAGTTCCTCGCCGAATTTTTGTTACCGTTCGGG
GTATTGTGGCTACTATTCGGGACATTAAGTTACCGTGAGCAGCATCTTCG
TTTTCACGGGACAGAATTGTACGCTACGGATTGTCATTACATGGTTGTCC
ACACTGGTACGTACGAGACGAATCGTGGCGCATGCTTTGCACAAGTCATC
CATATATAGACATTGATCCGCCCGACTGTGTAATTTTTCATCAAAAACTC
CGATTAAGCATTGGTTTGTTGCGTTGGATTCCTTGCAATATTTCCACCTG
GACTCTAACTATTCGCCGTGTTAACTCTGATTCACCCTCGTCGTCACGCC
ACCAATCGAGCGCAGCCCGCGGTGTGTCTTGGTTAATTTTGCAGTGTACA
GGCAAATCATCGCTTGTCTGCCTCGATCGAATCCCGGTGTGTTCCACCTC
GAAGTTGCTGCCTCCAAATGTCCCCAACATTTGGTTGTGCCTCTTAACGT
AGCACCCTCGAAGTTGGCACCCCTATTTGGCCCGCACCGCGGTGCGATCT
GCATACGCCTGGGGGGGGGGGTTGGCACCCTACCCCCCTTTGAAGCGTAC
AGGGGTGCGATCATAAGCGGGGGGTGCGTGCATTTTTTATGCCGGTAGGG
TGCTCGGAAAACGACCATGTGTGTCTTCAAAAGACATGCTTTCAACGGAT
GTTGTATGTTTTGGGAGGTACCGATATTTGCATGACGCATCTGAAGGACT
AGCACTAGCACAAGGCTCACAGTATATTTATAGGCGTTCGCTCTTCGCCG
TAATTTGGTGACTCGAGCCATGCATTAAACAGTCGAAAAATATTCAGTGC
GATGGTTGAGGTACCGGGAGTAAACAAATCAAAAGTTTGACATATACTAC
GGCTCCAGAAACATGGAAACCAAACAAGAAAATAGAAACAGCACTGTGAA
CAAGAAACCAAAAAACAAATGCGACCAGGACAACTTACTTGACGTGTTCC
TTCCTTCAGCCTATTGCAACGGCTGCGTGCTGAACGAGCACACAACAATA
ACCGACCCTACAGCAGTTCGATGTCGGAATCAGAGTCATTTCCCAAGTCG
AAGACATCGAACGCCTGGATGTCGCCCCCATCGTTCTCGTTGCCCATGCT
TTCGTCTCCGCCCCTTCGGGTTCTTGGGTCATCGCGGTACTCTGTACATG
TGTTGCAATTCAACCGAACATTATCAAGTGGAGGAGCCAGTGCGTACCGC
ACGGCCAAACCATAGCGAACTTCCGTAGAGAGTTCTCCACGTTCGACGCG
AGACGATGAGGTTATACGGCTCGCCATCGGGCTGCGCGTGGGCTGGTGTG
TGTGTGTGTGTGTGTGTGTGCCTGTGTCTGTGTGCTCCCATGCACTGAAA
GATAGTCGCGGGTTTTGTGCAAAATCTGCATCATGTTCATTTCCGCACCC
CCAATAGTTATTCCTGGACATAAGGCATATGCTCCATTCGGAATCCTACA
TCTCCGATATGTAGGAGGTAGTTGATATCCAGGGTTTTCGAATGTTATTC
TTGGTGCTTCATACATCCAACGTGATCAAACGTTAGGAATGTAAAACCCT
CATCCAGTAGACTTATGAGACAGAGGGAGTATTCACCGACAGTTGTTTCT
GATTCGAGAATGGCCACCCCCTTGGCTTGGCGCTAAATGAGAGAAACGCG
GAGTGCTCATCCCGAGTGTTGTGCACCTCTCGCGTACTATATGGTACACA
GACGCTCATTCTTGCCAGCTACCGTACAACAGACAGTTGGCATGGTCAAT
ACTTTGTACTTCGACAGGGTGCTTTGTTGAACTAAGACAATCCTACTGTT
CGTGCAAGAACGCCTTCGACTGCGTGGCGAGCTAAGCAGAAACATTTTCT
GTTTCCTCTGGCTTGACTTTCCGGAGGGATTCAACTTACCAAGACGTGAT
GAATCGCAAAGAGCACGTGTATGACTTTTGTGTTGAAATAAATATTTTGA
GGTGTCCAGGACTACGCCACTTGCTGGAGGAAAAATGCGGCTTGTGTCAA
GCCGTCGGTTGTCTTTTTAACATGCAAACTATCTACTCCCAGTAAATAGC
ACATTTCGCATTTCCACCATCCACTACGTCCACATTTAACATGGTGTTTA
TTCAAATCAAAGTGGATTCTCAAATCAGAACGAGATCTCGTTTGTGGTTT
TCCCCAATTTTGACCTTTAAGACTGACGATTCAGTAAATGCGCCTTGAAT
ATAAATTGGATTCCTGGGTCGTGGGAACAATACACTACTTTCATTTTTTT
TCGTTGACTTCGCTAAAGTTGGAAAAATCAGTCTACTCTTTGTATCCGAC
CCAATAACGATCAATACTCATTATGCCCGATACGAAAAATTGATCGATTT
GTTCTGTTGTAAAATTGCCGGATTATGTCCTATTCAAAAACTGAAACTGG
CGTGGTGTTCCCACGACTAAAGACTTTGGACTCATGTTCGAGGTGCGGTG
TCTAACTCGCTCGTCTTGCAGATTAAAATGGGGGTGGGGACTAGAATGGA
TAGCTCATTCTGATTTGAACGAGCATCGTGTTATTTATCCTGTTGTCCAA
ATTATCGTTGTGATTTCGACTGATTTGTGATCGTTCGTTGTGCTTTTCCC
CCCCTCGCGTCAACTACACTCTTGTGCTCAGGATACGGTGTCCGTGATAA
GCAGTGTGGCAGTATCTACCGCTGCGGAAAATGCAGACGTTGAGGACGCT
GGTGAGTAACGAGAAAAATAAGGTTACAGATAACAACTTGGAGGTATATC
TTGTTTTATCTGAACAATTTTAATCAAAGTCTTTGTCTCGTGTGCACTTC
GTCGAGGCAGATGTCGGACCGATGTGTGCCACACGGGCTGGGGGGGGGGG
GGGCTAAGGGGATGTTCAATGTTGCTACAGCATCCCTTGTTTCGTCAATT
AATAGCCAAATTGCCCTCGTGCCTCTTAGCGCATGAGTTCGTCATCAATC
TCGTTGCACGCCGCTTCTTATCTTTCCAGCCAGCGTTCTACGCACGTGAT
TTCGTCGATAGGAGAATCTGTACTGTTGTGATGATACCAACAGCCTCCCT
GGCAAGATTCAAGATTCACGCGCTTTTTGGATTCCTGTTTCCTGTCGTAT
TCCCCAATACCCCTTTCTTGCCACGTACGATGTTTCATTACAGCAGCGAC
AGCAGCACCAGGTGATGACCAAGCTGACGGAGACAGCGTTGGTGCATTAA
CAATGGCGACGGGCGCAGAAGCACAACTCGGTGAGGAAGAAGACCGAATA
GACGGCGATCGCGTCTCTAATGCCTCCGAGTTGGAAGGAGTACCAGATGA
TGCCGCAACCCCTGGGGGTGGCGTCGAGGATGATGGTGACAAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3453:10257..15952-

>mRNA_H-paniculata_contig3453.9215.1 ID=mRNA_H-paniculata_contig3453.9215.1|Name=mRNA_H-paniculata_contig3453.9215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig3453:10257..15952- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCGAGAAGAAGAAAGATGTCCGAAGACAATGATAGCAGCAGCGA
AGGTTCGGCTGGGTCAGATGTCGAAGAAGAGGAGGTGGCTGAGGAAGGAG
CGACAACATTCGTTCTCTCTCCAGACTTACAGAATGCTGAGCCGCAGACG
GGGAGAGGGAGCGAAAGGGAGGAGAGCGGGGATGGAACTGGAGCTGCTGG
TGCTGATGCTGCTCTGAAAAATGATGACGACGATGAAGACCCAGAGGAGA
ATGACGACGGCGAAGAGAGCGAATTGTCAGTCATCAGCGATGATGAGATG
TCTTCGAGAAGAAGAAAGATGTCCGAAGACAATGATAGCAGCAGCGAAGG
TTCGGCTGGGTCAGATGTCGAAGAAGAGGAGGTGGCTGAGGAAGGAGCGA
CAACATTCGTTCTCTCTCCAGACTTACAGAATGCTGAGCCGCAGACGGGG
AGAGGGAGCGAAAGGGAGGAGAGCGGGGATGGAACTGGAGCTGCTGGTGC
TGATGCTGCTCTGAAAAATGATGACGACGATGAAGACCCAGAGGAGAATG
ACGACGGCGAAGAGAGCGAATTGTCAGTCATCAGCGATGATGAGGATACG
GTGTCCGTGATAAGCAGTGTGGCAGTATCTACCGCTGCGGAAAATGCAGA
CGTTGAGGACGCTGGATACGGTGTCCGTGATAAGCAGTGTGGCAGTATCT
ACCGCTGCGGAAAATGCAGACGTTGAGGACGCTGCAGCGACAGCAGCACC
AGGTGATGACCAAGCTGACGGAGACAGCGTTGGTGCATTAACAATGGCGA
CGGGCGCAGAAGCACAACTCGGTGAGGAAGAAGACCGAATAGACGGCGAT
CGCGTCTCTAATGCCTCCGAGTTGGAAGGAGTACCAGATGATGCCGCAAC
CCCTGGGGGTGGCGTCGAGGATGATGGTGACAAGGAGCAGCGACAGCAGC
ACCAGGTGATGACCAAGCTGACGGAGACAGCGTTGGTGCATTAACAATGG
CGACGGGCGCAGAAGCACAACTCGGTGAGGAAGAAGACCGAATAGACGGC
GATCGCGTCTCTAATGCCTCCGAGTTGGAAGGAGTACCAGATGATGCCGC
AACCCCTGGGGGTGGCGTCGAGGATGATGGTGACAAGGAG
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