mRNA_H-paniculata_contig3453.9214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3453.9214.1
Unique NamemRNA_H-paniculata_contig3453.9214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3453.9214.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 2.950e-35
Identity = 96/177 (54.24%), Postives = 106/177 (59.89%), Query Frame = 1 
Query:   13 EEETEEETEARLAEYAARQAEEDAIRQERRAMRDNPAIIPKRGGFFVHDDRAGAAGWAPLAEGKSETAPEEEEP----------------VGRWRADALP-PAGNK-GSTGSSAASRSRDTRKRGNKSDARDDDLPWGHEGFEEVVRAEEEGRQIPKTSGFWSNPTGKGGRGGGAWR 489
            EEETEEE EAR+AEYAA +AEEDAI+QERRA+R+NPA+IPK G FFVHDDR G                                     VGRWRADALP P  NK G  G  A       RK+        DDLPWGHEG+EEV+RAEEEGR I  +SGFWSNPTGK GR G AWR
Sbjct:  153 EEETEEEREARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGRWRADALPSPKKNKSGDVGLRAR------RKKKPVDPDXXDDLPWGHEGYEEVLRAEEEGRPIASSSGFWSNPTGKDGRSG-AWR 322
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BLAST of mRNA_H-paniculata_contig3453.9214.1 vs. uniprot
Match: D8LS31_ECTSI (Btz domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS31_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.700e-11
Identity = 48/101 (47.52%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:   40 ARLAEYAARQAEEDAIRQERRAMRDNPAIIPKRGGFFVHDDRAGAAGWAPLAEGKSETAPEEE-------------------EPVGRWRADALP-PAGNKG 282
            AR+AEYAA +AEEDAI+QERRA+R+NPA+IPK G FFVHDDR                                        E VGRWRADALP P  NKG
Sbjct:  149 ARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVGRWRADALPSPKKNKG 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3453.9214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS47_9PHAE2.950e-3554.24Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LS31_ECTSI5.700e-1147.52Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3453contigH-paniculata_contig3453:7353..10190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size599
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3453.9214.1prot_H-paniculata_contig3453.9214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3453 7354..10190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.6697066-CDS-H-paniculata_contig3453:7353..74201622930065.6697066-CDS-H-paniculata_contig3453:7353..7420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 7354..7420 -
1691481132.6666188-CDS-H-paniculata_contig3453:7353..74201691481132.6666188-CDS-H-paniculata_contig3453:7353..7420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 7354..7420 -
1622930065.6863983-CDS-H-paniculata_contig3453:7846..79891622930065.6863983-CDS-H-paniculata_contig3453:7846..7989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 7847..7989 -
1691481132.6778307-CDS-H-paniculata_contig3453:7846..79891691481132.6778307-CDS-H-paniculata_contig3453:7846..7989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 7847..7989 -
1622930065.7047143-CDS-H-paniculata_contig3453:8415..84791622930065.7047143-CDS-H-paniculata_contig3453:8415..8479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 8416..8479 -
1691481132.6925-CDS-H-paniculata_contig3453:8415..84791691481132.6925-CDS-H-paniculata_contig3453:8415..8479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 8416..8479 -
1622930065.7210765-CDS-H-paniculata_contig3453:9133..93631622930065.7210765-CDS-H-paniculata_contig3453:9133..9363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 9134..9363 -
1691481132.7060218-CDS-H-paniculata_contig3453:9133..93631691481132.7060218-CDS-H-paniculata_contig3453:9133..9363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 9134..9363 -
1622930065.7324734-CDS-H-paniculata_contig3453:10097..101901622930065.7324734-CDS-H-paniculata_contig3453:10097..10190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 10098..10190 -
1691481132.7237525-CDS-H-paniculata_contig3453:10097..101901691481132.7237525-CDS-H-paniculata_contig3453:10097..10190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 10098..10190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3453.9214.1

>prot_H-paniculata_contig3453.9214.1 ID=prot_H-paniculata_contig3453.9214.1|Name=mRNA_H-paniculata_contig3453.9214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
AGGGEEETEEETEARLAEYAARQAEEDAIRQERRAMRDNPAIIPKRGGFF
VHDDRAGAAGWAPLAEGKSETAPEEEEPVGRWRADALPPAGNKGSTGSSA
ASRSRDTRKRGNKSDARDDDLPWGHEGFEEVVRAEEEGRQIPKTSGFWSN
PTGKGGRGGGAWRGGGGGGRRGGGDRRSSLEQGEHTSLDDGRRGGRGGG
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mRNA from alignment at H-paniculata_contig3453:7353..10190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3453.9214.1 ID=mRNA_H-paniculata_contig3453.9214.1|Name=mRNA_H-paniculata_contig3453.9214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2838bp|location=Sequence derived from alignment at H-paniculata_contig3453:7353..10190- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGGGGTGGGGAGGAGGAGACCGAGGAGGAGACTGAGGCGAGGCTTGC
GGAGTACGCTGCGCGGCAGGCTGAAGAGGATGCTATTCGCCAGGTACGTA
AGAAAACACCAAATGTGTGGAAGAATTAGAATATGACCTTAAGGCGGGCG
TTAACTTTCTCTTTATTTTTTTTTCATATTTCGTCTAGTATGCAAACAAC
AGGGGGGTTCCTCGGTACTAAGTTTTTGGAACATGATAACACGGGACGCC
GTTCTTTTTTTTATCGGTGTTGTACAGGACACGCGGTAGTCGGATTTATC
GGTGCCGCGGTACGTACATTGTGGAATTAAAATTTATCTTGGTATTGCAC
GGTACAACAGTGGTCGGGATCTTGTGCATGGATAGCTGAGAGACGGGTGT
TGAAAACCATCACAGTACACCAACTTTGGTGCAATATGGGAAAAGCTTGG
CCAAACCAAGAGACACCCAGAAAACTGTTTTTGGATCATGAGTCCCTGCA
AACTCCCGCAAGTCGCCTTTATCACCCAAGTCATGAGAATCAGACTTTTT
TATTTCACTTCTTGACGCGAATTCCGAATTGGATTTTTTTTTTTTTAAAC
AATCGAAGTAGAGGTCAAATGTGTCAATTTCTGGATTCTAAACGCCCCTC
GAAAAACCCACTTTTCTTGGTTGTTTTCCGTTCTATTTTTTTTTTCACCG
ACTCTTAACATGTTGCGCTCTATTTTCTTGTACATACCATATTCTATCTT
GATATTGCCAACTTACCCATGCTACCGGTCGTACCTGATGAAATTTTTAT
CATTTACTTGGGTAACAAACAATGCAGGAACGGAGAGCGATGCGCGATAA
CCCAGCTATCATTCCCAAACGCGGTGGATTTTTTGTCCACGACGATCGTG
CCGGCGCTGCGGGGTGGGCTCCATTGGCTGAAGGGAAGTCCGAAACTGCG
CCGGAGGAGGAAGAGCCCGTCGGGCGTTGGCGCGCCGATGCGTTGCCTCC
GGCTGGGAATAAAGGGTCGACCGGTAGTAGTGCTGCTAGCCGTAGCCGAG
ATACGAGGTGGGCGTTTGATTGCCTACGTTTGCTGCAGTGTTTTATCGCA
ATGGTTGCTGGGAGATTTTTGCTTGTGAAGGGAGCTGGTTTTGTACGGAT
TCATGGTCTTCGCTCGCGTCGTTTCTTGAAAACGAATGAAAGTTAATCTT
GGGGGAGATGTACTTGGCGGAAGAGTTATAGTGATGGTTTGGTCATTTTT
CCCTTTTTTATTCTCTTCTTTATATTTTTGTCGGTTGCAGTAGTACACAA
CTACGGCTACGCCCGTACAATATATTTTTCCTTGTATGCATCTATTCAAA
ACCCATAAGCCATGTACAGTGGCTCGCTGCGCTCGCATGTGGACACAATG
CCCAAGGATATTCAAAGATTCGTCCTTAAAAGATACCCCAAGTGTAGAGT
CGGAAAGTTCTCCGGAACTGTGATTTTCGTCATCACTTTAGCGTATGAAC
AATAGGGATACCTTTTTCCTCACCTGGCAACCGTTAGGCCTCGCGAGAAA
GCCACACCGCACATACAGTAAATATCTGTGACGTCGACATGGGCTCCATT
TCCTCTTCGATCCTCGGCTCATTTCACATCCCGTTCCCATGCCTCCGTAT
GCCGCGCGCTGATCGCTTGTGTGTTCTGCTGTTGCCTTTTTTTGCGCTGC
TATCTTCCCAGAAAGCGGGGAAACAAAAGCGACGCCAGAGACGACGATTT
GCCCTGGGGGCATGAAGGCTTCGAGGTTTGTGCATGGTTTTCTCAACGTG
ACAGGACTGTCACCTGATGTACTAGTTAGCAGCGAGACGCGTTCTCCTTT
TGCGAGGTGGGGCGATTAAAGGACCTTAGCCTCTTAGGTACTGAATATGT
GCCCCTCGTGTCTCTTTTCAACGGTGCATTATAATATGTGTGGTTTCTGT
ACATGCTACGTTTTTGTTGTCTTATCCTCTTCAGAGAGTTCTAACACATG
TTCAGGTTTTGTACACCGAAACGACGGCGGTATTCTTGTTTGCTGTATAC
AGTGTGAGCAATATCCCCCTGCGTTTTTCTCACACCGTAGGGAATACAAC
TATCTATCCCTAATAACTTGAACGCTATTTTTGTGTCATGTGTTGTGTTC
GATTTCTCCCCCCATTTTACGCATCCGTTCGGCAATTATCCCGGATATCA
GGAGGTAGTCAGAGCCGAAGAAGAAGGCCGCCAGATCCCCAAAACCTCCG
GCTTCTGGTCCAATCCTACGGGAAAAGGTGGCCGCGGTGGTGGGGCGTGG
AGGGGCGGTGGCGGCGGCGGACGCCGTGGCGGCGGCGATCGCAGGTGTGG
TGGGCCTCCCGTGGCTTAGCAAAACCCATGAACACAGTCGAGTATTGTAG
AGTGGAAAACTATATTATTACAACGGTTGGGTTGGATCTTGGACAACGTC
GTACTTGGGTAGTTCCATTGCCACAGGAAGTTACAGTAGTACAGCGAGCG
CGAGTCCATCGGAAAGACCTAGCTAGCCAGCCTTTCGGTAGCTAGCTCGT
CACAGAAGACAACGGATCTCTGTCGGCATTGATTGGGACAACAACATACA
TTCCAGCTACCGGTAACTAGCTCATAATGGATCTTTCTCAGGATATTTTG
AGCCAAAACGGCGAGCATAGTCATGCCGTCAACTCAAGCAGATCCACGAA
TGGTTGTTCCGGGAAGAAGCTCTAAAATGAACACCCTTCCCCCCCTCCCC
CTCTCGTTCGTGCGCCGTAGATCCTCACTTGAACAAGGAGAACATACCAG
CCTCGACGACGGGCGGCGGGGAGGGCGTGGCGGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3453:7353..10190-

>mRNA_H-paniculata_contig3453.9214.1 ID=mRNA_H-paniculata_contig3453.9214.1|Name=mRNA_H-paniculata_contig3453.9214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig3453:7353..10190- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGGGGTGGGGAGGAGGAGACCGAGGAGGAGACTGAGGCGAGGCTTGC
GGAGTACGCTGCGCGGCAGGCTGAAGAGGATGCTATTCGCCAGGCCGGGG
GTGGGGAGGAGGAGACCGAGGAGGAGACTGAGGCGAGGCTTGCGGAGTAC
GCTGCGCGGCAGGCTGAAGAGGATGCTATTCGCCAGGAACGGAGAGCGAT
GCGCGATAACCCAGCTATCATTCCCAAACGCGGTGGATTTTTTGTCCACG
ACGATCGTGCCGGCGCTGCGGGGTGGGCTCCATTGGCTGAAGGGAAGTCC
GAAACTGCGCCGGAGGAGGAAGAGCCCGTCGGGCGTTGGCGCGCCGATGC
GTTGCCTCCGGCTGGGAATAAAGGGTCGACCGGTAGTAGTGCTGCTAGCC
GTAGCCGAGATACGAGGAACGGAGAGCGATGCGCGATAACCCAGCTATCA
TTCCCAAACGCGGTGGATTTTTTGTCCACGACGATCGTGCCGGCGCTGCG
GGGTGGGCTCCATTGGCTGAAGGGAAGTCCGAAACTGCGCCGGAGGAGGA
AGAGCCCGTCGGGCGTTGGCGCGCCGATGCGTTGCCTCCGGCTGGGAATA
AAGGGTCGACCGGTAGTAGTGCTGCTAGCCGTAGCCGAGATACGAGAAAG
CGGGGAAACAAAAGCGACGCCAGAGACGACGATTTGCCCTGGGGGCATGA
AGGCTTCGAGAAAGCGGGGAAACAAAAGCGACGCCAGAGACGACGATTTG
CCCTGGGGGCATGAAGGCTTCGAGGAGGTAGTCAGAGCCGAAGAAGAAGG
CCGCCAGATCCCCAAAACCTCCGGCTTCTGGTCCAATCCTACGGGAAAAG
GTGGCCGCGGTGGTGGGGCGTGGAGGGGCGGTGGCGGCGGCGGACGCCGT
GGCGGCGGCGATCGCAGGAGGTAGTCAGAGCCGAAGAAGAAGGCCGCCAG
ATCCCCAAAACCTCCGGCTTCTGGTCCAATCCTACGGGAAAAGGTGGCCG
CGGTGGTGGGGCGTGGAGGGGCGGTGGCGGCGGCGGACGCCGTGGCGGCG
GCGATCGCAGATCCTCACTTGAACAAGGAGAACATACCAGCCTCGACGAC
GGGCGGCGGGGAGGGCGTGGCGGCGGCATCCTCACTTGAACAAGGAGAAC
ATACCAGCCTCGACGACGGGCGGCGGGGAGGGCGTGGCGGCGGC
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