mRNA_H-paniculata_contig3453.9212.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3453.9212.1
Unique NamemRNA_H-paniculata_contig3453.9212.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3453.9212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3453contigH-paniculata_contig3453:28..713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3453.9212.1prot_H-paniculata_contig3453.9212.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3453 243..662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.8743355-UTR-H-paniculata_contig3453:27..2421622930065.8743355-UTR-H-paniculata_contig3453:27..242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3453 28..242 +
1691481132.7715359-UTR-H-paniculata_contig3453:27..2421691481132.7715359-UTR-H-paniculata_contig3453:27..242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3453 28..242 +
1622930065.940264-UTR-H-paniculata_contig3453:662..7131622930065.940264-UTR-H-paniculata_contig3453:662..713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3453 663..713 +
1691481132.7897625-UTR-H-paniculata_contig3453:662..7131691481132.7897625-UTR-H-paniculata_contig3453:662..713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3453 663..713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.9086254-CDS-H-paniculata_contig3453:242..6621622930065.9086254-CDS-H-paniculata_contig3453:242..662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 243..662 +
1691481132.7808383-CDS-H-paniculata_contig3453:242..6621691481132.7808383-CDS-H-paniculata_contig3453:242..662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3453 243..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3453.9212.1

>prot_H-paniculata_contig3453.9212.1 ID=prot_H-paniculata_contig3453.9212.1|Name=mRNA_H-paniculata_contig3453.9212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MTSGAETSTAKTVTTHFRLRPREHPLRVIYMYIYIYLQSSPVQFVPIQSN
TVNVQPITILSVFVAALCRLLQPTCALVLHLPGALIFCRQASTSFSSLLV
QVPSTLPPCFPSLCPPACCTSPDPALTRWSKTRKSCGVT*
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mRNA from alignment at H-paniculata_contig3453:28..713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3453.9212.1 ID=mRNA_H-paniculata_contig3453.9212.1|Name=mRNA_H-paniculata_contig3453.9212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=686bp|location=Sequence derived from alignment at H-paniculata_contig3453:28..713+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCGCGCACCCCGAGGAGGTTTGGAGAACACTCAGTATCGCCTTCCGGC
CGGTAGCCGCTTCTTCGTCGTGTCGCTCGTACCGTCCCGCTGAATCTGCG
GAATCACGAATCAATCCACCAATCTGCCCCCTTCTGTAGCGATTCCAATT
TAATTCACTTCGAACAAGGGAGCAACACATTGGCGGCAACCGCTTCTAAC
TTTGTACCGCCAATCATGACCAGCGGTGCTGAAACCAGCACCGCAAAAAC
GGTGACGACCCATTTTCGGCTCAGGCCTAGGGAGCACCCCCTGAGGGTTA
TATATATGTATATATATATATATCTCCAGTCCAGTCCAGTCCAGTTCGTT
CCAATCCAATCCAACACTGTCAACGTCCAGCCCATTACCATACTTTCGGT
GTTTGTGGCGGCTCTCTGTCGCCTTCTCCAGCCCACATGTGCGTTGGTGT
TGCACCTCCCGGGAGCATTGATTTTTTGCCGGCAAGCGTCCACCTCATTT
TCTTCGCTGCTAGTCCAAGTGCCGAGCACCCTTCCCCCTTGTTTCCCCTC
ACTGTGTCCGCCCGCCTGTTGCACTTCGCCCGATCCAGCTCTTACACGAT
GGAGCAAGACTCGAAAGTCATGCGGGGTAACGTGATAGCGGCATAGGTGC
AGGCGACGACCTGCCCCGCCCCCTCCCGCCCGTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3453:28..713+

>mRNA_H-paniculata_contig3453.9212.1 ID=mRNA_H-paniculata_contig3453.9212.1|Name=mRNA_H-paniculata_contig3453.9212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig3453:28..713+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGCGGTGCTGAAACCAGCACCGCAAAAACGGTGACGACCCATTT
TCGGCTCAGGCCTAGGGAGCACCCCCTGAGGGTTATATATATGTATATAT
ATATATATCTCCAGTCCAGTCCAGTCCAGTTCGTTCCAATCCAATCCAAC
ACTGTCAACGTCCAGCCCATTACCATACTTTCGGTGTTTGTGGCGGCTCT
CTGTCGCCTTCTCCAGCCCACATGTGCGTTGGTGTTGCACCTCCCGGGAG
CATTGATTTTTTGCCGGCAAGCGTCCACCTCATTTTCTTCGCTGCTAGTC
CAAGTGCCGAGCACCCTTCCCCCTTGTTTCCCCTCACTGTGTCCGCCCGC
CTGTTGCACTTCGCCCGATCCAGCTCTTACACGATGGAGCAAGACTCGAA
AGTCATGCGGGGTAACGTGAATGACCAGCGGTGCTGAAACCAGCACCGCA
AAAACGGTGACGACCCATTTTCGGCTCAGGCCTAGGGAGCACCCCCTGAG
GGTTATATATATGTATATATATATATATCTCCAGTCCAGTCCAGTCCAGT
TCGTTCCAATCCAATCCAACACTGTCAACGTCCAGCCCATTACCATACTT
TCGGTGTTTGTGGCGGCTCTCTGTCGCCTTCTCCAGCCCACATGTGCGTT
GGTGTTGCACCTCCCGGGAGCATTGATTTTTTGCCGGCAAGCGTCCACCT
CATTTTCTTCGCTGCTAGTCCAAGTGCCGAGCACCCTTCCCCCTTGTTTC
CCCTCACTGTGTCCGCCCGCCTGTTGCACTTCGCCCGATCCAGCTCTTAC
ACGATGGAGCAAGACTCGAAAGTCATGCGGGGTAACGTGA
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