mRNA_H-paniculata_contig34519.9209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34519.9209.1
Unique NamemRNA_H-paniculata_contig34519.9209.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig34519.9209.1 vs. uniprot
Match: D8LSU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.250e-17
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 MHSQIQGVKNAIRELLPLLGENPSLGLVIITFTENTKG-------CYVSVDSFADPVAADSFVSSISLARPP 195
            M SQI+GVK A+REL+PLL ENP+LG+VI+TFTE   G       CYVSV+ F+DP  AD+FV  I+L+ PP
Sbjct:   31 MGSQIEGVKRAVRELIPLLAENPNLGIVIVTFTEGGSGKTSGGPRCYVSVNIFSDPTKADTFVRKITLSTPP 102
[Close]
BLAST of mRNA_H-paniculata_contig34519.9209.1 vs. uniprot
Match: A0A5D6XQF2_9STRA (VWFA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQF2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-6
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 MHSQIQGVKNAIRELLPLLGENPS--LGLVIITFTENTKGCYVSVDSFADPVAADSFVSSISLARPP 195
            M ++++GVK  +R L+  + E+ +  + + IITFTE++ GCYV+ +SF    +A SFVS I L  PP
Sbjct:   14 MENELRGVKETVRALVKSVSEDETHRVMVTIITFTEDSTGCYVTNNSFESGKSASSFVSRIQLCVPP 80
[Close]
BLAST of mRNA_H-paniculata_contig34519.9209.1 vs. uniprot
Match: W2Q970_PHYPN (VWFA domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2Q970_PHYPN)

HSP 1 Score: 52.4 bits (124), Expect = 2.990e-6
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 MHSQIQGVKNAIRELLP-LLGENPSLGLVIITFTENTKGCYVSVDSFADPVAADSFVSSISLARPP 195
            M S++ GVK  +R L+  +  E  ++ + IITFTE++KGCYV+  SF +   A  F+ S+ L  PP
Sbjct:   14 MSSELAGVKETVRHLVASVFEEEYAVMITIITFTESSKGCYVTNHSFTEGDEAIEFIKSVQLCAPP 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34519.9209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSU1_ECTSI2.250e-1758.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5D6XQF2_9STRA1.600e-641.79VWFA domain-containing protein n=1 Tax=Pythium bra... [more]
W2Q970_PHYPN2.990e-640.91VWFA domain-containing protein n=14 Tax=Phytophtho... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34519contigH-paniculata_contig34519:270..914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog2880.D8LSU1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EENP@1,2SK1D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size197
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.1501868-CDS-H-paniculata_contig34519:269..3541622930065.1501868-CDS-H-paniculata_contig34519:269..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34519 270..354 -
1691481132.3718328-CDS-H-paniculata_contig34519:269..3541691481132.3718328-CDS-H-paniculata_contig34519:269..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34519 270..354 -
1622930065.1654658-CDS-H-paniculata_contig34519:804..9141622930065.1654658-CDS-H-paniculata_contig34519:804..914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34519 805..914 -
1691481132.383272-CDS-H-paniculata_contig34519:804..9141691481132.383272-CDS-H-paniculata_contig34519:804..914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34519 805..914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34519.9209.1prot_H-paniculata_contig34519.9209.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34519 270..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34519.9209.1

>prot_H-paniculata_contig34519.9209.1 ID=prot_H-paniculata_contig34519.9209.1|Name=mRNA_H-paniculata_contig34519.9209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MHSQIQGVKNAIRELLPLLGENPSLGLVIITFTENTKGCYVSVDSFADPV
AADSFVSSISLARPP
back to top

mRNA from alignment at H-paniculata_contig34519:270..914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34519.9209.1 ID=mRNA_H-paniculata_contig34519.9209.1|Name=mRNA_H-paniculata_contig34519.9209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig34519:270..914- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTCGCAGATCCAGGGGGTAAAGAACGCCATTCGGGAGCTACTACC
GCTGCTTGGGGAGAATCCCTCGCTGGGCCTCGTGATCATCACCTTCACGG
AAAACACAAAGTAAGCACTGAGATAACAACTAACTGTCATGAATAATAGG
TTAATCGTAGAGCTTGACTTCCCTGTCGGGTTGTGCTGTAATAAAACGAA
CAAGTATGCGGATTGATTTTCCAATTGCTCAATTGTATGTAGATGGGCGG
TCGGTCATGAATACATATATGCAAGCGTCGATTCAAAATACATAATTGAT
GTCCCTTGAATGGATACGCAGTTTGTGCGTGCGTAAAGTCGACCAACGAC
TACAGAGGGTATGTTGTAGTGGTTCATATTTGACGGTTTAAGGCCGACGA
AGTACGCGAAATCTTGGTGGCGGATCGAGGCGCCACCATAACAACTGCTC
CGTTTCCTGCGGCGATAGACCGGAGACGAGACAAATTGGCAAACCGAAAT
TAAAATCATGCAGCTGTCTCTGCCCGCCATCATTCGTGTATTATATTTTC
ATATCGACAGGGGGTGCTACGTGTCGGTGGACTCTTTCGCAGACCCAGTT
GCAGCGGACAGCTTTGTTAGCAGCATCAGCCTGGCGCGACCTCCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig34519:270..914-

>mRNA_H-paniculata_contig34519.9209.1 ID=mRNA_H-paniculata_contig34519.9209.1|Name=mRNA_H-paniculata_contig34519.9209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig34519:270..914- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTCGCAGATCCAGGGGGTAAAGAACGCCATTCGGGAGCTACTACC
GCTGCTTGGGGAGAATCCCTCGCTGGGCCTCGTGATCATCACCTTCACGG
AAAACACAAAATGCATTCGCAGATCCAGGGGGTAAAGAACGCCATTCGGG
AGCTACTACCGCTGCTTGGGGAGAATCCCTCGCTGGGCCTCGTGATCATC
ACCTTCACGGAAAACACAAAGGGGTGCTACGTGTCGGTGGACTCTTTCGC
AGACCCAGTTGCAGCGGACAGCTTTGTTAGCAGCATCAGCCTGGCGCGAC
CTCCTGGGGTGCTACGTGTCGGTGGACTCTTTCGCAGACCCAGTTGCAGC
GGACAGCTTTGTTAGCAGCATCAGCCTGGCGCGACCTCCT
back to top