mRNA_H-paniculata_contig345.9201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig345.9201.1
Unique NamemRNA_H-paniculata_contig345.9201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: D3EZS7_CONWI (Glycosyl transferase group 1 n=1 Tax=Conexibacter woesei (strain DSM 14684 / CIP 108061 / JCM 11494 / NBRC 100937 / ID131577) TaxID=469383 RepID=D3EZS7_CONWI)

HSP 1 Score: 72.4 bits (176), Expect = 2.030e-11
Identity = 57/154 (37.01%), Postives = 72/154 (46.75%), Query Frame = 1 
Query:   49 RLRFVIAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPIAGFASCGVLESAGMGSAAAIRNALVGWPP-SAIALAEAAERLLTDKSDSLLSARTQEEYGEPLRVTPVGKETGVPPEFTWE 507
            RLR+ I G GP    LR  +  LG++DRVEF G ++ ++  A   S D+ + P + E FG+A  EA A G+P  G A        G    AA    LV  PP    ALA A +RLL D S        + E G   R T       V   FTWE
Sbjct:  249 RLRWTIVGDGPEREPLRAAAARLGVTDRVEFTGQLDPARARARAWSADLFVLPSVDEAFGVAYVEAMAGGVPAIGCAG-----EDGPDEIAAAGGGLVRVPPRDPAALASAIDRLLRDTS-------ARRELGAQARAT-------VAASFTWE 383
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: A0A497KMP3_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497KMP3_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 3.610e-11
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   16 EVVETATGLAARLRFVIAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPIAGFASCGVLE 297
            E V   T     ++F+IAG GP+LG+L+++S  L +SD VEF+G     ++L   R  DI ++  I E FG+   EA A+G PI  F+  G+ E
Sbjct:  225 ESVRYVTNEIQHVKFLIAGDGPILGNLKSMSNFLAISDNVEFLGFTPRDRLLELYRLSDIFVSTSIYEPFGLVILEAMASGTPIVAFSIGGIKE 318
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: A0A0F7FVY5_9ACTN (Glycosyl transferase n=3 Tax=Streptomyces TaxID=1883 RepID=A0A0F7FVY5_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 1.170e-8
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 GAGAREVVETATGLAARLRFVIAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPI 267
            G G  ++V    GL   +R V+ G GPL G L  L+   G+ DRV   G+ E   + A L ++D+ ++    ETFG+AT EA AAG+P+
Sbjct:  205 GKGFADLVRAVAGLPGNVRLVLGGEGPLRGELERLAAGCGIGDRVLLPGECE---VPALLSAMDVFVSASTEETFGLATLEALAAGLPV 290
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: M5PUM3_DESAF (Glycosyltransferase n=1 Tax=Desulfocurvibacter africanus PCS TaxID=1262666 RepID=M5PUM3_DESAF)

HSP 1 Score: 64.3 bits (155), Expect = 1.220e-8
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    7 GAREVVETATGLAA---RLRFVIAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPI 267
            G RE V+ A  ++A     RF +AG GP LG +R L+  LGLS R EF+G VE+  M AF +S+D+++ P   E   +A  EA A G+P+
Sbjct:  206 GWREFVDVARKVSASGSEFRFRVAGDGPQLGEMRALTDSLGLSQRFEFLGAVED--MRAFYKSIDLLLAPSWTEGLPMAQMEACAMGLPV 293
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: A0A1F6EE35_9BACT (Uncharacterized protein n=1 Tax=Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_51_21 TaxID=1798508 RepID=A0A1F6EE35_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-8
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   19 VVETATGLAARLRFVIAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPIAGFASCGVLE 297
            V+     L   ++ +I G GPL   L+ ++  LG+S+RVEFVG+V  + +  +L++ DI + P   E  GIA  EAFAAG+P+   A  G+++
Sbjct:  216 VIHALPKLPETVQLLIVGGGPLEMKLKGMAAELGVSNRVEFVGEVTNTFLPPYLKAADIFVRPSRSEGMGIAFIEAFAAGLPVIAPAVGGIVD 308
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: UPI0003F9A02C (DUF1957 domain-containing protein n=1 Tax=Alicyclobacillus pomorum TaxID=204470 RepID=UPI0003F9A02C)

HSP 1 Score: 63.5 bits (153), Expect = 3.020e-8
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:   52 LRFVIAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPIAGFASCGVLESAGMGSAAAI----RNALVGWPPSAIALAEAAERLLTDK 402
            ++FVI G GP+L HL   +  LG+SDRVEF G ++++     LR  D+ + P + E FGI   EA AA  P+          +A +G  + I     N L   P  A +L+    RLL D+
Sbjct:  783 VKFVIVGKGPMLDHLTLQAQQLGISDRVEFAGFLDDATRNRLLRVADMAVFPSLYEPFGIVALEAMAANTPVV---------AADVGGLSDIVRHEHNGLTTLPNDAQSLSTQIRRLLRDR 894
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: A0A7W2GR02_9HYPH (Glycosyltransferase family 4 protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2GR02_9HYPH)

HSP 1 Score: 63.2 bits (152), Expect = 3.070e-8
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   64 IAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPI 267
            IAG GP L  L+T++  LGL+DRV F+G+  +S++   L +LD+ + P   ETFG+A  EA  AG+PI
Sbjct:  226 IAGQGPDLERLQTITRALGLTDRVHFLGERAQSEIGLVLAALDVFVFPTRAETFGLAAVEAGQAGVPI 293
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: W8NZM7_9EURY (Glycosyltransferase n=3 Tax=Thermococcus TaxID=2263 RepID=W8NZM7_9EURY)

HSP 1 Score: 62.8 bits (151), Expect = 4.160e-8
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   61 VIAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPIAGFASCGVLE 297
            +IAG G +L  LR  + LLG++DRV F+G VE SK+    R+ D+ + P + E FGI   EA A+G P+ G    G+ E
Sbjct:  233 LIAGQGSMLPLLRERAKLLGVADRVRFLGMVEYSKLPVLYRASDVFVLPSLSEAFGIVLLEAMASGTPVIGTRVGGIPE 311
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: A0A1H8NHE3_9BRAD (Glycosyltransferase involved in cell wall bisynthesis n=2 Tax=Rhodopseudomonas TaxID=1073 RepID=A0A1H8NHE3_9BRAD)

HSP 1 Score: 62.4 bits (150), Expect = 5.980e-8
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   64 IAGSGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPI 267
            +AG G     LR L+  LG+SDRV+F+G++   ++  FL  LD+ + P + ETFG+A  EA  AG+P+
Sbjct:  263 LAGQGQDEPRLRELADRLGVSDRVQFIGEISPDQVANFLACLDVFVFPSLAETFGLAAVEAANAGVPV 330
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BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Match: UPI001B378AF8 (glycosyltransferase n=1 Tax=Agromyces archimandritae TaxID=2781962 RepID=UPI001B378AF8)

HSP 1 Score: 62.0 bits (149), Expect = 7.520e-8
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 1 
Query:   55 RFVIAG--SGPLLGHLRTLSGLLGLSDRVEFVGDVEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPIAGFASCGVLESAGMGSAAAIRNALVGWPPSAIALAEAAERLLTDKSDSLLSARTQEEY 441
            R VIAG  SG     L  L+  LG+ DRVEF+G V+ +     L    + + P   E+FG+A AEA AAG  +A      V    G+ ++AA   A+    P + A+AEA   LL D+S  L  A     Y
Sbjct:  222 RLVIAGTVSGDQRVDLAGLAARLGIQDRVEFIGPVDAAGRARLLGRSSVFVLPSEDESFGVAAAEAMAAGCAVA------VTSEVGLAASAASAGAVATIDPMSSAIAEAILPLLNDESARLAVAERGRAY 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig345.9201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D3EZS7_CONWI2.030e-1137.01Glycosyl transferase group 1 n=1 Tax=Conexibacter ... [more]
A0A497KMP3_9ARCH3.610e-1139.36Uncharacterized protein n=1 Tax=Candidatus Bathyar... [more]
A0A0F7FVY5_9ACTN1.170e-839.33Glycosyl transferase n=3 Tax=Streptomyces TaxID=18... [more]
M5PUM3_DESAF1.220e-843.33Glycosyltransferase n=1 Tax=Desulfocurvibacter afr... [more]
A0A1F6EE35_9BACT2.150e-837.63Uncharacterized protein n=1 Tax=Candidatus Kaiserb... [more]
UPI0003F9A02C3.020e-835.54DUF1957 domain-containing protein n=1 Tax=Alicyclo... [more]
A0A7W2GR02_9HYPH3.070e-847.06Glycosyltransferase family 4 protein n=1 Tax=Hypho... [more]
W8NZM7_9EURY4.160e-843.04Glycosyltransferase n=3 Tax=Thermococcus TaxID=226... [more]
A0A1H8NHE3_9BRAD5.980e-842.65Glycosyltransferase involved in cell wall bisynthe... [more]
UPI001B378AF87.520e-836.64glycosyltransferase n=1 Tax=Agromyces archimandrit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig345contigH-paniculata_contig345:23029..24648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.6
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog469383.Cwoe_5510
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl transferases group 1
EggNOG OGs2HENX@201174,4CRKC@84995,COG0438@1,COG0438@2
COG Functional cat.M
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
Exons4
Model size618
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig345.9201.1prot_H-paniculata_contig345.9201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig345 23029..24646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930064.0913424-CDS-H-paniculata_contig345:23028..232421622930064.0913424-CDS-H-paniculata_contig345:23028..23242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 23029..23242 +
1691481131.9524684-CDS-H-paniculata_contig345:23028..232421691481131.9524684-CDS-H-paniculata_contig345:23028..23242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 23029..23242 +
1622930064.1090882-CDS-H-paniculata_contig345:23423..236111622930064.1090882-CDS-H-paniculata_contig345:23423..23611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 23424..23611 +
1691481131.9647727-CDS-H-paniculata_contig345:23423..236111691481131.9647727-CDS-H-paniculata_contig345:23423..23611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 23424..23611 +
1622930064.1291015-CDS-H-paniculata_contig345:23984..241031622930064.1291015-CDS-H-paniculata_contig345:23984..24103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 23985..24103 +
1691481131.9747136-CDS-H-paniculata_contig345:23984..241031691481131.9747136-CDS-H-paniculata_contig345:23984..24103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 23985..24103 +
1622930064.1514902-CDS-H-paniculata_contig345:24552..246461622930064.1514902-CDS-H-paniculata_contig345:24552..24646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 24553..24646 +
1691481131.9847682-CDS-H-paniculata_contig345:24552..246461691481131.9847682-CDS-H-paniculata_contig345:24552..24646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 24553..24646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig345.9201.1

>prot_H-paniculata_contig345.9201.1 ID=prot_H-paniculata_contig345.9201.1|Name=mRNA_H-paniculata_contig345.9201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
GAGAREVVETATGLAARLRFVIAGSGPLLGHLRTLSGLLGLSDRVEFVGD
VEESKMLAFLRSLDIIINPCICETFGIATAEAFAAGIPIAGFASCGVLES
AGMGSAAAIRNALVGWPPSAIALAEAAERLLTDKSDSLLSARTQEEYGEP
LRVTPVGKETGVPPEFTWETYIERHDAFFTMLVRRKRRQLRQRSKSFTTS
SNANT
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mRNA from alignment at H-paniculata_contig345:23029..24648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig345.9201.1 ID=mRNA_H-paniculata_contig345.9201.1|Name=mRNA_H-paniculata_contig345.9201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1620bp|location=Sequence derived from alignment at H-paniculata_contig345:23029..24648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCTGGGGCACGGGAGGTGGTCGAAACCGCCACGGGGTTGGCGGCGCG
TCTACGCTTTGTGATAGCTGGGTCTGGACCCCTCCTGGGGCACCTACGGA
CGCTGTCTGGCCTCCTTGGTTTGTCAGATCGCGTAGAGTTTGTTGGAGAC
GTGGAGGAATCGAAAATGCTCGCTTTTCTCCGCTCGTTGGACATCATCAT
TAACCCTTGCATATGTGAGTCCATTCTCGGCGATATCATGTTGATGGGGG
TGGGGTGGGGGGCACGTGGTTGAAGTCCCGTTGATGTGTCCAGACGACGC
GACACTCGACAGAGATAGGTACCACGGAAAAATCGCTAGTCCATTAACCC
TATTCCCCGTCGTTTGAGATTGCGTCCCGTTGGTCTATTTTACAGGTGAA
ACGTTCGGTATTGCGACCGCTGAAGCGTTCGCGGCAGGAATCCCCATTGC
CGGCTTTGCATCCTGTGGTGTTTTGGAATCAGCTGGCATGGGGTCGGCGG
CGGCAATACGGAACGCCCTCGTCGGGTGGCCACCTTCTGCCATCGCATTG
GCGGAGGCTGCCGAGAGGCTGCTCACAGATAAGGTATGCCCACAACTGAT
CCCAGCCAGTGCGTCACAATTGTATTCCGTTTGATCAGCACTTTCCCCGC
GCAGTGTCTCGTGGGGTAATTGGATGCACAGACAAAACATCCATTGCTAG
AAGCGTGCGCCACGAAGCGCGCTTTCCGACTCGCTGGCCGCTGATCGAAG
CTCATTCGTCAAATTGTGCGATACTGGACACGCGACCGGTCACGTGTGAG
TTAGTGACCGAGCACTTCGGGTGATGGGGTGGTGCAACTCGGTCATAGCT
GCTGATCGGATTTGAGGGACCAATTCCACATCCGCAGAAGGATGTTATCG
GGAGAGTGATGGCTGTGTGCTCTGTGTTCGAATTTTTCATGCCCGATATT
CCACAGAGTGATTCGCTCTTGTCAGCACGCACGCAAGAAGAATATGGCGA
GCCGTTGCGTGTAACTCCTGTGGGAAAGGAAACAGGTGTTCCACCGGAGT
TCACCTGGGAGACATATATTGAAAGGTAGGTCACTCTACTGAAGATGATA
ACGGATTTGGAGGCCCTCGCGCATCAAAAACGAAGCCAAAATTTGGTAAC
GGAAGCGAGTATCTAGGCAAGGGAATTTTGACAAGACATGTCCAATCGCG
GTATGAACTACGTATATCTCATCACCCTCCACATGTAGTATAGCGTGTAA
ATCCGGTGTTCGGCTACCAGTGGCATTCCATAGACGCCTGGTCATGCTTA
TCGCGTGGGACTCGCACTAAATTTCGTTAGATAACATAATCTCTTGTAAA
CTTCGGGGAATGCCAACGCGTTAACGTCATCCTCAACGTTTTTCCGTATA
TAGAATCCAGCCCACTAGAAGTGCCGTTCGATTATCCACGTCCCCGCTGC
TCCTTCAGCGCGCTTAACGCCGCCCTGGTCGATTCCTCGTGTCGCCTGCT
CGTTGCTGTTCCTTCCCCCCCAAGACACGATGCCTTCTTTACGATGCTAG
TGCGGCGAAAACGCCGGCAGCTTCGGCAAAGAAGCAAAAGCTTCACCACG
AGCAGCAATGCCAACACAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig345:23029..24648+

>mRNA_H-paniculata_contig345.9201.1 ID=mRNA_H-paniculata_contig345.9201.1|Name=mRNA_H-paniculata_contig345.9201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig345:23029..24648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCTGGGGCACGGGAGGTGGTCGAAACCGCCACGGGGTTGGCGGCGCG
TCTACGCTTTGTGATAGCTGGGTCTGGACCCCTCCTGGGGCACCTACGGA
CGCTGTCTGGCCTCCTTGGTTTGTCAGATCGCGTAGAGTTTGTTGGAGAC
GTGGAGGAATCGAAAATGCTCGCTTTTCTCCGCTCGTTGGACATCATCAT
TAACCCTTGCATATGGGGCTGGGGCACGGGAGGTGGTCGAAACCGCCACG
GGGTTGGCGGCGCGTCTACGCTTTGTGATAGCTGGGTCTGGACCCCTCCT
GGGGCACCTACGGACGCTGTCTGGCCTCCTTGGTTTGTCAGATCGCGTAG
AGTTTGTTGGAGACGTGGAGGAATCGAAAATGCTCGCTTTTCTCCGCTCG
TTGGACATCATCATTAACCCTTGCATATGTGAAACGTTCGGTATTGCGAC
CGCTGAAGCGTTCGCGGCAGGAATCCCCATTGCCGGCTTTGCATCCTGTG
GTGTTTTGGAATCAGCTGGCATGGGGTCGGCGGCGGCAATACGGAACGCC
CTCGTCGGGTGGCCACCTTCTGCCATCGCATTGGCGGAGGCTGCCGAGAG
GCTGCTCACAGATAAGGTGAAACGTTCGGTATTGCGACCGCTGAAGCGTT
CGCGGCAGGAATCCCCATTGCCGGCTTTGCATCCTGTGGTGTTTTGGAAT
CAGCTGGCATGGGGTCGGCGGCGGCAATACGGAACGCCCTCGTCGGGTGG
CCACCTTCTGCCATCGCATTGGCGGAGGCTGCCGAGAGGCTGCTCACAGA
TAAGAGTGATTCGCTCTTGTCAGCACGCACGCAAGAAGAATATGGCGAGC
CGTTGCGTGTAACTCCTGTGGGAAAGGAAACAGGTGTTCCACCGGAGTTC
ACCTGGGAGACATATATTGAAAGAGTGATTCGCTCTTGTCAGCACGCACG
CAAGAAGAATATGGCGAGCCGTTGCGTGTAACTCCTGTGGGAAAGGAAAC
AGGTGTTCCACCGGAGTTCACCTGGGAGACATATATTGAAAGACACGATG
CCTTCTTTACGATGCTAGTGCGGCGAAAACGCCGGCAGCTTCGGCAAAGA
AGCAAAAGCTTCACCACGAGCAGCAATGCCAACACAACACGATGCCTTCT
TTACGATGCTAGTGCGGCGAAAACGCCGGCAGCTTCGGCAAAGAAGCAAA
AGCTTCACCACGAGCAGCAATGCCAACACA
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