mRNA_H-paniculata_contig345.9200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig345.9200.1
Unique NamemRNA_H-paniculata_contig345.9200.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL)

HSP 1 Score: 165 bits (417), Expect = 2.260e-44
Identity = 97/250 (38.80%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVI-AGRREKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTP----AEGKVKI-------SAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFG 714
            LN  ++EE+F++ PP F         V RL+KSLYGL Q GR WN   +  +  IGL ++  D+C+Y+   DG    + VTV+VDDL+I A  +++ ++ K  ++  + MKD G   +++GIEV RDR  GT+T+SQ  YI  +L RYGF +   V TP    A  K++        +AP +R       EY+ M+G  M+A+  TRPDIAYAV + ++   +   E  + CKR+F YLS   D G+ +G
Sbjct:   93 LNGELKEEVFMQQPPGF---EDGTGRVWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSAR------AEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFHYLSGTRDYGLVYG 331          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL)

HSP 1 Score: 162 bits (409), Expect = 6.230e-44
Identity = 92/252 (36.51%), Postives = 147/252 (58.33%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVI-AGRREKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTP----AEGKVKISAPDSRGRSGN-STEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNTRF 738
            LN  ++EE++++ PP F         V RL+KS+YGL Q GR+WN   +  +  +GL ++  D+C+Y+   DG +  + VTV+VDDL+I A  +++ ++ +  +   + MKD G   +++GIEV RDR  GT+T+SQ  YI  +L RYGF     V TP    A  K++    D+   + +   EY+ M+G  M+A+  TRPDIAYAV + ++   +   E  + CKR+FRYLS   + G+ +G + +   F
Sbjct:    8 LNGELKEEVYMRQPPGF---EDGTGRVWRLKKSIYGLHQSGRDWNREFDRKVQSVGLTKTAADNCVYYRERDGEQ--VWVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSVRAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVF 254          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.560e-43
Identity = 92/249 (36.95%), Postives = 145/249 (58.23%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPP---EFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
            L + ++E++++K PP   ++ P   ++ C  RLRKSLYGLKQ GRNW+  ++ +    GL  S  D CLY      GE  L++ +YVDDL+I    R   DKFK +I++ + MKD   L  ++G+ ++R+R N T+ ISQ  YI  +L ++G  +C+ V TP EG + K+   D +       EY  +VGS ++A+  TRPDIA+AV    + ++   +E +   KR+ RYL    D+G+ + G S  +
Sbjct:  311 LQSDLEEKVYIKQPPGYEKYGPNGGELVC--RLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVK----PDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGS 552          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.320e-43
Identity = 91/247 (36.84%), Postives = 141/247 (57.09%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPPEFFPF-SRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
            L + ++E+++VK PP +  + S     V RLRKSLYGLKQ GRNW+  ++ +    G   S+ D CLY      GE  L++ +YVDDL+I    RE V KFKH I++ + MKD   L  ++G+ ++RDR    + ISQ +YI  +L ++   +C+ V TP EG + K+   D +       EY  +VGS ++A+  TRPDIA+AV    + ++    E +   KR+ RYL    ++G+ + G S  +
Sbjct:   91 LQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVK----PDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGS 332          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 164 bits (416), Expect = 1.080e-42
Identity = 89/239 (37.24%), Postives = 142/239 (59.41%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPPEFFPFSRDIPC-VRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGRRE-KVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITF 711
            LN+ + EE++++ P  F   S + P  V +L+K++YGLKQ GR WNNTL++ L ++G  RS  ++CLY  +   G +   + VYVDDL+I    E ++   K  I+ ++ M DSGSLS  +G+E++RD   G +++ Q +YIR +LK YG   CR V TP +    +   D      N T+Y+ ++GS M+ +  +RPDI +AV++ ++R  +   E  +  K I RYLS   +L I +
Sbjct:  935 LNSSLDEEVYMRQPQNFI--STEHPNKVLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY 1169          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: UPI001C35AD5A (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35AD5A)

HSP 1 Score: 157 bits (397), Expect = 3.620e-42
Identity = 84/239 (35.15%), Postives = 137/239 (57.32%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVI-AGRREKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRS-GNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITF 711
            L   ++E +++  PP F   ++ + C+  L+KSLYGLKQ  R WN  L+  L +IGL +S  D C+Y+   +  E    V VYVDD+++   R E  +  K++++ ++ MKD G L   +G+ + RDR NG + + Q  YI ++L +YG   C+ V TP + K K+S  D  G S  +S  Y+ ++GS ++ S  TRPDI+Y+VN  ++       + +   KRI RYL +  +  +T+
Sbjct:    8 LQGDIEENIYMVQPPNFELNNKQV-CL--LKKSLYGLKQASRQWNQKLDKTLKEIGLKQSLLDPCIYYKIRN--EDITFVAVYVDDIILLTSRLETKNYIKNHLSSKFEMKDLGELKYCLGLHIHRDRNNGILCVDQKRYIEDILSKYGMSNCKTVRTPIDPKTKLSNDDENGDSIVDSHLYQELIGSLLYLSQSTRPDISYSVNTLSKFNSKPNMQHWMALKRILRYLKLTVNYTLTY 241          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 6.350e-42
Identity = 92/249 (36.95%), Postives = 143/249 (57.43%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPPEFFPFS---RDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
            L + ++E+++VK P  +  +     ++ C  RLRKSLYGLKQ GRNW+  ++ +    G   S+ D CLY      GE  L++ +YVDDL+I    RE VDKFK  I++ + MKD   L  ++G+ ++R+R    + ISQ +YI  VL ++G  +CR V TP EG + K+   D++       EY  +VGS ++A+  TRPDIA+AV    + ++    E +   KR+ RYL    D+GI + G +  +
Sbjct:  320 LQSDLEEKVYVKQPIGYEQYGLNGEELVC--RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAK----PDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGS 561          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A329RB64_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RB64_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.480e-41
Identity = 85/220 (38.64%), Postives = 127/220 (57.73%), Query Frame = 1
Query:   70 IPC-----VRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGRREKVDKFKHN-INQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITF 711
             PC     V  + K+LYGL+Q GR WN+ L  +L+D G  RS T+ CLY+  D  G T +L+ VYVDD+++A   E+  K   + ++  Y +KD G L++ +GIEV +   + ++TI+Q  Y  E+L+ +G+ +   V  P E KVK+        +  S EYR  VG  M+ +TGTRPD+A+AV Q +R +     +   T KRI RYL+     GIT+
Sbjct:   44 FPCAVEGHVYMVVKALYGLRQSGREWNSELNQWLLDRGYQRSMTEPCLYYRFD--GNTTMLILVYVDDIMVATNEEEGKKILFDDLDTAYGIKDQGLLTQYLGIEVAQT--DDSVTINQSKYAHEILETFGYSQAHAVGNPMETKVKLVPLGESEDADTSFEYRKAVGMLMYLATGTRPDLAFAVEQLSRFVAKPSAKHVGTLKRILRYLAGTVGYGITY 259          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.410e-40
Identity = 91/249 (36.55%), Postives = 142/249 (57.03%), Query Frame = 1
Query:    1 LNAPVQEELFVKLP---PEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
            L + ++E++++K P    ++ P   ++ C  RLRKSLYGLKQ GRNW+  ++ +    G   S+ D CLY      GE  L+V +YVDDL+IA   R   DKFK  I++ + MKD   L  ++G+ ++R+R    + ISQ  YI  +L ++G  +C+ V TP EG + K+   D +  S    EY  +VGS ++A+  TRPDIA+AV    + ++    E +   KR+ RYL    D+GI + G +  +
Sbjct:  609 LQSDLEEKVYIKQPHGYEKYGPNGGELVC--RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDS----EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGS 850          
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 154 bits (388), Expect = 1.770e-40
Identity = 90/244 (36.89%), Postives = 140/244 (57.38%), Query Frame = 1
Query:    1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGRRE-KVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRSGNSTE-----YRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFG 714
            LN P+ E+++++ PP F   S  + C  +L+KS+YGLKQ GRNWN  L   L+D GL R  +D C+Y +R+ G    ++V V+VDD++IA  ++ + +K +  +  R++MK  G    ++GI++ RDR   T++I Q  YI  VL+R+G ++C    TP +   K S    R  SGN  +     YR  +GS + A+  TRPDI ++V   +R  E+     +   KRI RYL    D  +T+G
Sbjct:   62 LNGPLNEDVYMEQPPNFEDKSNRV-C--KLKKSIYGLKQSGRNWNQLLNQTLIDFGLKRCLSDQCIYVARNSGNI--MIVMVWVDDVLIACNQKCEEEKLRAALESRFKMKYLGDAKVILGIQITRDRMKKTVSIDQRRYIETVLERFGMEDCNPANTPMDVNTKYS----RKMSGNDEKNEIFPYREAIGSLLFAAQVTRPDIIFSVILLSRYCEEPKWAHWIATKRIMRYLKGTIDHKLTYG 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A146H3U8_MYCCL2.260e-4438.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H7K8_MYCCL6.230e-4436.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA1.560e-4336.95Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA2.320e-4336.84Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W8BWJ0_CERCA1.080e-4237.24Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C35AD5A3.620e-4235.15Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
W7TIM1_9STRA6.350e-4236.95Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A329RB64_9STRA5.480e-4138.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T174_9STRA1.410e-4036.55Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A4Q3EC79_9SPHI1.770e-4036.89Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig345contigH-paniculata_contig345:6304..7122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue8.7e-35
Seed eggNOG ortholog164328.Phyra85860
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size744
Cds size744
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.9973595-CDS-H-paniculata_contig345:6303..68091622930063.9973595-CDS-H-paniculata_contig345:6303..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 6304..6809 +
1691481131.9213607-CDS-H-paniculata_contig345:6303..68091691481131.9213607-CDS-H-paniculata_contig345:6303..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 6304..6809 +
1622930064.0159976-CDS-H-paniculata_contig345:6884..71221622930064.0159976-CDS-H-paniculata_contig345:6884..7122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 6885..7122 +
1691481131.9415684-CDS-H-paniculata_contig345:6884..71221691481131.9415684-CDS-H-paniculata_contig345:6884..7122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig345 6885..7122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig345.9200.1prot_H-paniculata_contig345.9200.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig345 6304..7122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig345.9200.1

>prot_H-paniculata_contig345.9200.1 ID=prot_H-paniculata_contig345.9200.1|Name=mRNA_H-paniculata_contig345.9200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLED
FLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGRREKVDKFK
HNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFD
ECRRVPTPAEGKVKISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAY
AVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNTRFN*
back to top

mRNA from alignment at H-paniculata_contig345:6304..7122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig345.9200.1 ID=mRNA_H-paniculata_contig345.9200.1|Name=mRNA_H-paniculata_contig345.9200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=819bp|location=Sequence derived from alignment at H-paniculata_contig345:6304..7122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAACGCTCCGGTACAAGAAGAGCTGTTTGTTAAGCTACCGCCAGAGTT TTTCCCTTTCTCCCGAGACATACCGTGTGTGCGCCGCCTGCGTAAAAGCC TGTACGGCCTCAAGCAGAGGGGCCGAAACTGGAATAACACTCTTGAAGAT TTTCTTGTTGACATAGGACTCGACCGTTCCACTACCGACTCATGCTTGTA CTTTTCCCGCGACGATGGGGGAGAAACAAACCTTCTGGTGACTGTATATG TTGACGACCTGGTAATTGCTGGCCGTCGTGAGAAAGTAGACAAGTTCAAG CACAACATAAATCAGCGTTATAGGATGAAAGACTCGGGCTCTCTCTCGCG CATGATGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCA TCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAAGATACGGTTTTGAC GAGTGTCGAAGAGTACCCACCCCTGCAGAGGGAAAAGTGAAGATTTCGGC ACCCGAGTCGGCCGACAAGCCCTCCGAACCGAAGACACTTGGAGCTGTAC TATCGGACATAGGCGCAGGAGTACAAGAAAGCAGCAGAGGGAGAAGTGGT AATTCAACTGAATATAGAGGCATGGTAGGATCATTCATGCACGCCTCGAC AGGAACTAGACCTGATATAGCATACGCGGTAAATCAAGCAGCACGTCGTA TGGAGGACCTATGTCGGGAAGAGTTCAGTACATGCAAGCGCATTTTTCGT TATCTCAGTATTGTACCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAA CAATACGCGGTTCAACTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig345:6304..7122+

>mRNA_H-paniculata_contig345.9200.1 ID=mRNA_H-paniculata_contig345.9200.1|Name=mRNA_H-paniculata_contig345.9200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig345:6304..7122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAACGCTCCGGTACAAGAAGAGCTGTTTGTTAAGCTACCGCCAGAGTT
TTTCCCTTTCTCCCGAGACATACCGTGTGTGCGCCGCCTGCGTAAAAGCC
TGTACGGCCTCAAGCAGAGGGGCCGAAACTGGAATAACACTCTTGAAGAT
TTTCTTGTTGACATAGGACTCGACCGTTCCACTACCGACTCATGCTTGTA
CTTTTCCCGCGACGATGGGGGAGAAACAAACCTTCTGGTGACTGTATATG
TTGACGACCTGGTAATTGCTGGCCGTCGTGAGAAAGTAGACAAGTTCAAG
CACAACATAAATCAGCGTTATAGGATGAAAGACTCGGGCTCTCTCTCGCG
CATGATGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCA
TCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAAGATACGGTTTTGAC
GAGTGTCGAAGAGTACCCACCCCTGCAGAGGGAAAAGTGAAGATTTCGGC
ACCCGATTGAACGCTCCGGTACAAGAAGAGCTGTTTGTTAAGCTACCGCC
AGAGTTTTTCCCTTTCTCCCGAGACATACCGTGTGTGCGCCGCCTGCGTA
AAAGCCTGTACGGCCTCAAGCAGAGGGGCCGAAACTGGAATAACACTCTT
GAAGATTTTCTTGTTGACATAGGACTCGACCGTTCCACTACCGACTCATG
CTTGTACTTTTCCCGCGACGATGGGGGAGAAACAAACCTTCTGGTGACTG
TATATGTTGACGACCTGGTAATTGCTGGCCGTCGTGAGAAAGTAGACAAG
TTCAAGCACAACATAAATCAGCGTTATAGGATGAAAGACTCGGGCTCTCT
CTCGCGCATGATGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCA
TAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAAGATACGGT
TTTGACGAGTGTCGAAGAGTACCCACCCCTGCAGAGGGAAAAGTGAAGAT
TTCGGCACCCGACAGCAGAGGGAGAAGTGGTAATTCAACTGAATATAGAG
GCATGGTAGGATCATTCATGCACGCCTCGACAGGAACTAGACCTGATATA
GCATACGCGGTAAATCAAGCAGCACGTCGTATGGAGGACCTATGTCGGGA
AGAGTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTATTGTACCTG
ACCTCGGCATTACGTTCGGCGGTAAGAGTAACAATACGCGGTTCAACTAA
CAGCAGAGGGAGAAGTGGTAATTCAACTGAATATAGAGGCATGGTAGGAT
CATTCATGCACGCCTCGACAGGAACTAGACCTGATATAGCATACGCGGTA
AATCAAGCAGCACGTCGTATGGAGGACCTATGTCGGGAAGAGTTCAGTAC
ATGCAAGCGCATTTTTCGTTATCTCAGTATTGTACCTGACCTCGGCATTA
CGTTCGGCGGTAAGAGTAACAATACGCGGTTCAACTAA
back to top