mRNA_H-paniculata_contig345.9200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL) HSP 1 Score: 165 bits (417), Expect = 2.260e-44 Identity = 97/250 (38.80%), Postives = 144/250 (57.60%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVI-AGRREKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTP----AEGKVKI-------SAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFG 714
LN ++EE+F++ PP F V RL+KSLYGL Q GR WN + + IGL ++ D+C+Y+ DG + VTV+VDDL+I A +++ ++ K ++ + MKD G +++GIEV RDR GT+T+SQ YI +L RYGF + V TP A K++ +AP +R EY+ M+G M+A+ TRPDIAYAV + ++ + E + CKR+F YLS D G+ +G
Sbjct: 93 LNGELKEEVFMQQPPGF---EDGTGRVWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDG--ERVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSAR------AEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFHYLSGTRDYGLVYG 331
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL) HSP 1 Score: 162 bits (409), Expect = 6.230e-44 Identity = 92/252 (36.51%), Postives = 147/252 (58.33%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVI-AGRREKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTP----AEGKVKISAPDSRGRSGN-STEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNTRF 738
LN ++EE++++ PP F V RL+KS+YGL Q GR+WN + + +GL ++ D+C+Y+ DG + + VTV+VDDL+I A +++ ++ + + + MKD G +++GIEV RDR GT+T+SQ YI +L RYGF V TP A K++ D+ + + EY+ M+G M+A+ TRPDIAYAV + ++ + E + CKR+FRYLS + G+ +G + + F
Sbjct: 8 LNGELKEEVYMRQPPGF---EDGTGRVWRLKKSIYGLHQSGRDWNREFDRKVQSVGLTKTAADNCVYYRERDGEQ--VWVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSVRAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVF 254
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.560e-43 Identity = 92/249 (36.95%), Postives = 145/249 (58.23%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPP---EFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
L + ++E++++K PP ++ P ++ C RLRKSLYGLKQ GRNW+ ++ + GL S D CLY GE L++ +YVDDL+I R DKFK +I++ + MKD L ++G+ ++R+R N T+ ISQ YI +L ++G +C+ V TP EG + K+ D + EY +VGS ++A+ TRPDIA+AV + ++ +E + KR+ RYL D+G+ + G S +
Sbjct: 311 LQSDLEEKVYIKQPPGYEKYGPNGGELVC--RLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVK----PDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGS 552
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.320e-43 Identity = 91/247 (36.84%), Postives = 141/247 (57.09%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPPEFFPF-SRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
L + ++E+++VK PP + + S V RLRKSLYGLKQ GRNW+ ++ + G S+ D CLY GE L++ +YVDDL+I RE V KFKH I++ + MKD L ++G+ ++RDR + ISQ +YI +L ++ +C+ V TP EG + K+ D + EY +VGS ++A+ TRPDIA+AV + ++ E + KR+ RYL ++G+ + G S +
Sbjct: 91 LQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVK----PDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGS 332
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA) HSP 1 Score: 164 bits (416), Expect = 1.080e-42 Identity = 89/239 (37.24%), Postives = 142/239 (59.41%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPPEFFPFSRDIPC-VRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGRRE-KVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITF 711
LN+ + EE++++ P F S + P V +L+K++YGLKQ GR WNNTL++ L ++G RS ++CLY + G + + VYVDDL+I E ++ K I+ ++ M DSGSLS +G+E++RD G +++ Q +YIR +LK YG CR V TP + + D N T+Y+ ++GS M+ + +RPDI +AV++ ++R + E + K I RYLS +L I +
Sbjct: 935 LNSSLDEEVYMRQPQNFI--STEHPNKVLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY 1169
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: UPI001C35AD5A (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35AD5A) HSP 1 Score: 157 bits (397), Expect = 3.620e-42 Identity = 84/239 (35.15%), Postives = 137/239 (57.32%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVI-AGRREKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRS-GNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITF 711
L ++E +++ PP F ++ + C+ L+KSLYGLKQ R WN L+ L +IGL +S D C+Y+ + E V VYVDD+++ R E + K++++ ++ MKD G L +G+ + RDR NG + + Q YI ++L +YG C+ V TP + K K+S D G S +S Y+ ++GS ++ S TRPDI+Y+VN ++ + + KRI RYL + + +T+
Sbjct: 8 LQGDIEENIYMVQPPNFELNNKQV-CL--LKKSLYGLKQASRQWNQKLDKTLKEIGLKQSLLDPCIYYKIRN--EDITFVAVYVDDIILLTSRLETKNYIKNHLSSKFEMKDLGELKYCLGLHIHRDRNNGILCVDQKRYIEDILSKYGMSNCKTVRTPIDPKTKLSNDDENGDSIVDSHLYQELIGSLLYLSQSTRPDISYSVNTLSKFNSKPNMQHWMALKRILRYLKLTVNYTLTY 241
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 162 bits (410), Expect = 6.350e-42 Identity = 92/249 (36.95%), Postives = 143/249 (57.43%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPPEFFPFS---RDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
L + ++E+++VK P + + ++ C RLRKSLYGLKQ GRNW+ ++ + G S+ D CLY GE L++ +YVDDL+I RE VDKFK I++ + MKD L ++G+ ++R+R + ISQ +YI VL ++G +CR V TP EG + K+ D++ EY +VGS ++A+ TRPDIA+AV + ++ E + KR+ RYL D+GI + G + +
Sbjct: 320 LQSDLEEKVYVKQPIGYEQYGLNGEELVC--RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAK----PDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGS 561
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A329RB64_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RB64_9STRA) HSP 1 Score: 151 bits (382), Expect = 5.480e-41 Identity = 85/220 (38.64%), Postives = 127/220 (57.73%), Query Frame = 1
Query: 70 IPC-----VRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGRREKVDKFKHN-INQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITF 711
PC V + K+LYGL+Q GR WN+ L +L+D G RS T+ CLY+ D G T +L+ VYVDD+++A E+ K + ++ Y +KD G L++ +GIEV + + ++TI+Q Y E+L+ +G+ + V P E KVK+ + S EYR VG M+ +TGTRPD+A+AV Q +R + + T KRI RYL+ GIT+
Sbjct: 44 FPCAVEGHVYMVVKALYGLRQSGREWNSELNQWLLDRGYQRSMTEPCLYYRFD--GNTTMLILVYVDDIMVATNEEEGKKILFDDLDTAYGIKDQGLLTQYLGIEVAQT--DDSVTINQSKYAHEILETFGYSQAHAVGNPMETKVKLVPLGESEDADTSFEYRKAVGMLMYLATGTRPDLAFAVEQLSRFVAKPSAKHVGTLKRILRYLAGTVGYGITY 259
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.410e-40 Identity = 91/249 (36.55%), Postives = 142/249 (57.03%), Query Frame = 1
Query: 1 LNAPVQEELFVKLP---PEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGR-REKVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKV-KISAPDSRGRSGNSTEYRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFGGKSNNT 732
L + ++E++++K P ++ P ++ C RLRKSLYGLKQ GRNW+ ++ + G S+ D CLY GE L+V +YVDDL+IA R DKFK I++ + MKD L ++G+ ++R+R + ISQ YI +L ++G +C+ V TP EG + K+ D + S EY +VGS ++A+ TRPDIA+AV + ++ E + KR+ RYL D+GI + G + +
Sbjct: 609 LQSDLEEKVYIKQPHGYEKYGPNGGELVC--RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDS----EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGS 850
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI) HSP 1 Score: 154 bits (388), Expect = 1.770e-40 Identity = 90/244 (36.89%), Postives = 140/244 (57.38%), Query Frame = 1
Query: 1 LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDFLVDIGLDRSTTDSCLYFSRDDGGETNLLVTVYVDDLVIAGRRE-KVDKFKHNINQRYRMKDSGSLSRMMGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRRVPTPAEGKVKISAPDSRGRSGNSTE-----YRGMVGSFMHASTGTRPDIAYAVNQAARRMEDLCREEFSTCKRIFRYLSIVPDLGITFG 714
LN P+ E+++++ PP F S + C +L+KS+YGLKQ GRNWN L L+D GL R +D C+Y +R+ G ++V V+VDD++IA ++ + +K + + R++MK G ++GI++ RDR T++I Q YI VL+R+G ++C TP + K S R SGN + YR +GS + A+ TRPDI ++V +R E+ + KRI RYL D +T+G
Sbjct: 62 LNGPLNEDVYMEQPPNFEDKSNRV-C--KLKKSIYGLKQSGRNWNQLLNQTLIDFGLKRCLSDQCIYVARNSGNI--MIVMVWVDDVLIACNQKCEEEKLRAALESRFKMKYLGDAKVILGIQITRDRMKKTVSIDQRRYIETVLERFGMEDCNPANTPMDVNTKYS----RKMSGNDEKNEIFPYREAIGSLLFAAQVTRPDIIFSVILLSRYCEEPKWAHWIATKRIMRYLKGTIDHKLTYG 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig345.9200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig345.9200.1 >prot_H-paniculata_contig345.9200.1 ID=prot_H-paniculata_contig345.9200.1|Name=mRNA_H-paniculata_contig345.9200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp LNAPVQEELFVKLPPEFFPFSRDIPCVRRLRKSLYGLKQRGRNWNNTLEDback to top mRNA from alignment at H-paniculata_contig345:6304..7122+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig345.9200.1 ID=mRNA_H-paniculata_contig345.9200.1|Name=mRNA_H-paniculata_contig345.9200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=819bp|location=Sequence derived from alignment at H-paniculata_contig345:6304..7122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig345:6304..7122+ >mRNA_H-paniculata_contig345.9200.1 ID=mRNA_H-paniculata_contig345.9200.1|Name=mRNA_H-paniculata_contig345.9200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig345:6304..7122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |