mRNA_H-paniculata_contig34495.9198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34495.9198.1
Unique NamemRNA_H-paniculata_contig34495.9198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A8J9X128_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X128_PHATR)

HSP 1 Score: 83.6 bits (205), Expect = 8.770e-18
Identity = 38/47 (80.85%), Postives = 38/47 (80.85%), Query Frame = 3 
Query:   90 IPP*RCPSSTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            IP       TRA NSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:    4 IPILEMSKLTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 50
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: K7ZI39_9DIPT (Alanine--tRNA ligase (Fragment) n=3 Tax=Nematocera TaxID=7148 RepID=K7ZI39_9DIPT)

HSP 1 Score: 84.3 bits (207), Expect = 1.070e-17
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:  102 RCPSSTRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            +C    RAAN+QKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:    3 KCQKWVRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 45
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: V8N2J8_OPHHA (tRNA-synt_2c domain-containing protein (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8N2J8_OPHHA)

HSP 1 Score: 81.3 bits (199), Expect = 1.210e-17
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 3 
Query:  117 TRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW*DG---KIEHEREERGERRNAQV 290
            TRA N+QKCIRAGGKHNDLDDVGKDVYH TFFEMLG+W  G   K++ E   +   R   +
Sbjct:    5 TRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKVQREHSRKLSTRGYDI 65
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BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A6J1WBC3_9SAUR (Alanine--tRNA ligase n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1WBC3_9SAUR)

HSP 1 Score: 82.0 bits (201), Expect = 3.150e-17
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  117 TRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW*DG---KIEHEREERGERRNAQVG 293
            TRA N+QKCIRAGGKHNDLDDVGKDVYH TFFEMLG+W  G   K+  E   +   R   VG
Sbjct:   66 TRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKVWREHSRKLSTRGYDVG 127
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A3P7JBC9_STRVU (Alanine--tRNA ligase (Fragment) n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7JBC9_STRVU)

HSP 1 Score: 80.1 bits (196), Expect = 6.310e-17
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3 
Query:  120 RAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            RA N+QKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:   45 RAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 81
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A6A5ADU7_9STRA (Alanine--tRNA ligase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ADU7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.650e-17
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:  117 TRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            TRA NSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:  105 TRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 142
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A392VQT3_9FABA (Alanine--tRNA ligase (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392VQT3_9FABA)

HSP 1 Score: 79.0 bits (193), Expect = 1.050e-16
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:  117 TRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            +RA N+QKCIRAGGKHNDLDDVGKD YH TFFEMLGNW
Sbjct:   11 SRACNNQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 48
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A068U9N3_COFCA (Alanine--tRNA ligase n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068U9N3_COFCA)

HSP 1 Score: 80.5 bits (197), Expect = 1.320e-16
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:  117 TRAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            TRA N+QKCIRAGGKHNDLDDVGKD YH TFFEMLGNW
Sbjct:   65 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 102
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A7S4QQZ2_9STRA (Alanine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQZ2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3 
Query:  120 RAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            RA NSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:   84 RAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 120
[Close]
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Match: A0A2G8L0V1_STIJA (Alanine--tRNA ligase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L0V1_STIJA)

HSP 1 Score: 82.8 bits (203), Expect = 1.380e-16
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 3 
Query:  120 RAANSQKCIRAGGKHNDLDDVGKDVYHDTFFEMLGNW 230
            RAANSQKCIRAGGKHNDLDDVGKDVYH TFFEMLGNW
Sbjct:    6 RAANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34495.9198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9X128_PHATR8.770e-1880.85Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
K7ZI39_9DIPT1.070e-1783.72Alanine--tRNA ligase (Fragment) n=3 Tax=Nematocera... [more]
V8N2J8_OPHHA1.210e-1762.30tRNA-synt_2c domain-containing protein (Fragment) ... [more]
A0A6J1WBC3_9SAUR3.150e-1764.52Alanine--tRNA ligase n=1 Tax=Notechis scutatus Tax... [more]
A0A3P7JBC9_STRVU6.310e-1791.89Alanine--tRNA ligase (Fragment) n=1 Tax=Strongylus... [more]
A0A6A5ADU7_9STRA8.650e-1794.74Alanine--tRNA ligase n=1 Tax=Aphanomyces astaci Ta... [more]
A0A392VQT3_9FABA1.050e-1686.84Alanine--tRNA ligase (Fragment) n=1 Tax=Trifolium ... [more]
A0A068U9N3_COFCA1.320e-1689.47Alanine--tRNA ligase n=1 Tax=Coffea canephora TaxI... [more]
A0A7S4QQZ2_9STRA1.350e-1694.59Alanine--tRNA ligase n=1 Tax=Ditylum brightwellii ... [more]
A0A2G8L0V1_STIJA1.380e-1697.30Alanine--tRNA ligase n=1 Tax=Stichopus japonicus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34495contigH-paniculata_contig34495:429..1426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size246
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34495.9198.1prot_H-paniculata_contig34495.9198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34495 639..1426 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.65391-UTR-H-paniculata_contig34495:428..6381622930063.65391-UTR-H-paniculata_contig34495:428..638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34495 429..638 -
1691481131.7854013-UTR-H-paniculata_contig34495:428..6381691481131.7854013-UTR-H-paniculata_contig34495:428..638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34495 429..638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.6791775-CDS-H-paniculata_contig34495:638..8231622930063.6791775-CDS-H-paniculata_contig34495:638..823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34495 639..823 -
1691481131.800145-CDS-H-paniculata_contig34495:638..8231691481131.800145-CDS-H-paniculata_contig34495:638..823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34495 639..823 -
1622930063.7006397-CDS-H-paniculata_contig34495:1365..14261622930063.7006397-CDS-H-paniculata_contig34495:1365..1426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34495 1366..1426 -
1691481131.8199425-CDS-H-paniculata_contig34495:1365..14261691481131.8199425-CDS-H-paniculata_contig34495:1365..1426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34495 1366..1426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34495.9198.1

>prot_H-paniculata_contig34495.9198.1 ID=prot_H-paniculata_contig34495.9198.1|Name=mRNA_H-paniculata_contig34495.9198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
QSRRAARRPNPAIRQRWHESVQAAFPGNCGSPPEDVQAPLVRPTLKNVSV
RGGSTMTWTTWERTFTMTLSSKCLATGETGK*
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mRNA from alignment at H-paniculata_contig34495:429..1426-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34495.9198.1 ID=mRNA_H-paniculata_contig34495.9198.1|Name=mRNA_H-paniculata_contig34495.9198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=998bp|location=Sequence derived from alignment at H-paniculata_contig34495:429..1426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCCCGTCGTGCCGCACGACGACCCAACCCTGCTATTCGTCAACGCTG
GCATGAATCAGGTGAAGTGGAAAGTGACCTTGAAATCATTTTCTGGCACT
CTGGTTACCCTTAGGATCTGTCTGTTTTTTATTAGATAGAAAGGTGTAGG
CCATGTATATTTTGGCGAGCAGTTTTTGAATTGTGCGAGCTCTCCGTTGT
CGAGATACGTATTCGTTTTCGTCTTCAAAAACATTGACACCCCCCGGCTT
TAGTGCAATAGATACTAACACAATGTCTGGCAGTAAGTGGTCAACTGAAT
CGATAGCTGCTGCCCACACCGCATCGAACAACAATCGGTGTCCGTAGGCC
TATACAGATCGGAAGTGGCGATCACGTACAAACGATCGGTAGGGTACCGA
TCAGAGAGGTGGATGTATTAACCATGCGTGGATCAAGACGGTCTACTGAT
CGTACGATGTGATGTATTGGCTCACAATGAGTGGTATTTACTGTTAATGC
TTTGATCTGATCTGATCTGATCGGTTCGGTGGACCGTGGATTCCCAGTTA
CAGCTGCCTACTTGAAGTGTCTTGTGCTTTGATGGTTCTTGCTGCTGTTG
CAGTTCAAGCCGCTTTTCCTGGGAACTGCGGATCCCCCCCTGAAGATGTC
CAAGCTCCACTCGTGCGGCCAACTCTCAAAAATGTATCCGTGCGGGGGGG
AAGCACAATGACCTGGACGACGTGGGAAAGGACGTTTACCATGACACTTT
CTTCGAAATGCTTGGCAACTGGTGAGACGGGAAAATAGAGCACGAGAGAG
AGGAGAGAGGAGAGAGGAGGAATGCACAGGTCGGCGCAATCCTGCTTTGG
ACAGAAATGAATATTTTTTGGGTTTGGATATTGTTGACGGTGGGCAAAGT
TGTGAGCACCGTACCCTAACCGTAACTCTTGCACCTTGCACCTTGCACCT
ACGCCTCTCGAGGGCAAAATTGCGTCTCGATTCTATCTTGAATCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig34495:429..1426-

>mRNA_H-paniculata_contig34495.9198.1 ID=mRNA_H-paniculata_contig34495.9198.1|Name=mRNA_H-paniculata_contig34495.9198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig34495:429..1426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCCCGTCGTGCCGCACGACGACCCAACCCTGCTATTCGTCAACGCTG
GCATGAATCAGCAGTCCCGTCGTGCCGCACGACGACCCAACCCTGCTATT
CGTCAACGCTGGCATGAATCAGTTCAAGCCGCTTTTCCTGGGAACTGCGG
ATCCCCCCCTGAAGATGTCCAAGCTCCACTCGTGCGGCCAACTCTCAAAA
ATGTATCCGTGCGGGGGGGAAGCACAATGACCTGGACGACGTGGGAAAGG
ACGTTTACCATGACACTTTCTTCGAAATGCTTGGCAACTGGTGAGACGGG
AAAATAGTTCAAGCCGCTTTTCCTGGGAACTGCGGATCCCCCCCTGAAGA
TGTCCAAGCTCCACTCGTGCGGCCAACTCTCAAAAATGTATCCGTGCGGG
GGGGAAGCACAATGACCTGGACGACGTGGGAAAGGACGTTTACCATGACA
CTTTCTTCGAAATGCTTGGCAACTGGTGAGACGGGAAAATAG
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